diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/hybpiper/package.py | 33 |
1 files changed, 30 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/hybpiper/package.py b/var/spack/repos/builtin/packages/hybpiper/package.py index db890c6f73..d1b6e1a96b 100644 --- a/var/spack/repos/builtin/packages/hybpiper/package.py +++ b/var/spack/repos/builtin/packages/hybpiper/package.py @@ -7,7 +7,7 @@ from spack.package import * -class Hybpiper(Package): +class Hybpiper(PythonPackage, Package): """HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of Python scripts @@ -17,24 +17,51 @@ class Hybpiper(Package): homepage = "https://github.com/mossmatters/HybPiper" url = "https://github.com/mossmatters/HybPiper/archive/v1.2.0.tar.gz" git = "https://github.com/mossmatters/HybPiper/HybPiper.git" + maintainers("snehring") license("GPL-3.0-or-later") + version("2.1.8", sha256="ff358a560d6dbbec4fdac67457451cb4e6ca21b8661044c43902aa013d805e47") version("1.3.1", sha256="7ca07a9390d1ca52c72721774fa220546f18d3fa3b58500f68f3b2d89dbc0ecf") version("1.2.0", sha256="34c7b324e9bcacb6ccfe87dc50615d6f93866433b61a59291707efa858b6df57") + build_system( + conditional("python_pip", when="@2.1:"), + conditional("generic", when="@:1.3.1"), + default="python_pip", + ) + depends_on("python@2.7:", type=("build", "run")) + depends_on("python@3.9:", type=("build", "run"), when="@2.1:") + depends_on("py-biopython", type=("build", "run")) + depends_on("py-biopython@1.80:", type=("build", "run"), when="@2.1:") + depends_on("py-matplotlib", type=("build", "run"), when="@2.1:") + depends_on("py-pandas", type=("build", "run"), when="@2.1:") + depends_on("py-pebble", type=("build", "run"), when="@2.1:") + depends_on("py-progressbar2", type=("build", "run"), when="@2.1:") + depends_on("py-psutil", type=("build", "run"), when="@2.1:") + depends_on("py-scipy", type=("build", "run"), when="@2.1:") + depends_on("py-seaborn", type=("build", "run"), when="@2.1:") + depends_on("exonerate") + depends_on("exonerate@2.4:", when="@2.1:") + depends_on("bbmap", when="@2.1:") depends_on("blast-plus") - depends_on("spades") - depends_on("parallel") + depends_on("blast-plus@2.9.0:", when="@2.1:") depends_on("bwa") + depends_on("diamond", when="@2.1:") + depends_on("mafft", when="@2.1:") + depends_on("parallel") depends_on("samtools") + depends_on("samtools@1.14", when="@2.1:") + depends_on("spades") + depends_on("spades@3.15.4:", when="@2.1:") def setup_run_environment(self, env): env.set("HYBPIPER_HOME", self.prefix) + @when("@:1.3.1") def install(self, spec, prefix): mkdirp(prefix.bin) install("*.py", prefix.bin) |