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-rw-r--r--lib/spack/spack/bootstrap.py10
-rw-r--r--lib/spack/spack/cmd/modules/__init__.py10
-rw-r--r--lib/spack/spack/cmd/style.py2
-rw-r--r--lib/spack/spack/test/cmd/spec.py5
-rw-r--r--lib/spack/spack/test/link_paths.py235
-rw-r--r--lib/spack/spack/test/url_parse.py5
-rw-r--r--var/spack/repos/builtin/packages/albany/package.py7
-rw-r--r--var/spack/repos/builtin/packages/alps/package.py15
-rw-r--r--var/spack/repos/builtin/packages/bazel/package.py7
-rw-r--r--var/spack/repos/builtin/packages/camellia/package.py7
-rw-r--r--var/spack/repos/builtin/packages/damaris/package.py14
-rw-r--r--var/spack/repos/builtin/packages/denovogear/package.py6
-rw-r--r--var/spack/repos/builtin/packages/erne/package.py7
-rw-r--r--var/spack/repos/builtin/packages/express/package.py6
-rw-r--r--var/spack/repos/builtin/packages/faodel/package.py6
-rw-r--r--var/spack/repos/builtin/packages/flexi/package.py20
-rw-r--r--var/spack/repos/builtin/packages/folly/package.py12
-rw-r--r--var/spack/repos/builtin/packages/gpi-space/package.py6
-rw-r--r--var/spack/repos/builtin/packages/gunrock/package.py9
-rw-r--r--var/spack/repos/builtin/packages/hip/package.py24
-rw-r--r--var/spack/repos/builtin/packages/julia/package.py6
-rw-r--r--var/spack/repos/builtin/packages/libmaus2/package.py8
-rw-r--r--var/spack/repos/builtin/packages/llvm-amdgpu/package.py9
-rw-r--r--var/spack/repos/builtin/packages/mivisionx/package.py7
-rw-r--r--var/spack/repos/builtin/packages/music/package.py13
-rw-r--r--var/spack/repos/builtin/packages/nalu-wind/package.py6
-rw-r--r--var/spack/repos/builtin/packages/nalu/package.py7
-rw-r--r--var/spack/repos/builtin/packages/nektar/package.py6
-rw-r--r--var/spack/repos/builtin/packages/omnitrace/package.py18
-rw-r--r--var/spack/repos/builtin/packages/percept/package.py8
-rw-r--r--var/spack/repos/builtin/packages/postgis/package.py9
-rw-r--r--var/spack/repos/builtin/packages/py-abipy/package.py10
-rw-r--r--var/spack/repos/builtin/packages/r3d/package.py9
-rw-r--r--var/spack/repos/builtin/packages/relion/package.py9
-rw-r--r--var/spack/repos/builtin/packages/salmon/package.py14
-rw-r--r--var/spack/repos/builtin/packages/scotch/package.py6
-rw-r--r--var/spack/repos/builtin/packages/shiny-server/package.py6
-rw-r--r--var/spack/repos/builtin/packages/strelka/package.py6
-rw-r--r--var/spack/repos/builtin/packages/superlu-dist/package.py9
-rw-r--r--var/spack/repos/builtin/packages/xyce/package.py8
40 files changed, 432 insertions, 155 deletions
diff --git a/lib/spack/spack/bootstrap.py b/lib/spack/spack/bootstrap.py
index 3313c475a2..8cd820f6c0 100644
--- a/lib/spack/spack/bootstrap.py
+++ b/lib/spack/spack/bootstrap.py
@@ -545,7 +545,10 @@ def ensure_module_importable_or_raise(module, abstract_spec=None):
if b.try_import(module, abstract_spec):
return
- assert h, 'expected at least one exception to have been raised at this point: while bootstrapping {0}'.format(module) # noqa: E501
+ assert h, (
+ "expected at least one exception to have been raised at this point: "
+ "while bootstrapping {0}".format(module)
+ )
msg = 'cannot bootstrap the "{0}" Python module '.format(module)
if abstract_spec:
msg += 'from spec "{0}" '.format(abstract_spec)
@@ -599,7 +602,10 @@ def ensure_executables_in_path_or_raise(executables, abstract_spec):
cmd.add_default_envmod(env_mods)
return cmd
- assert h, 'expected at least one exception to have been raised at this point: while bootstrapping {0}'.format(executables_str) # noqa: E501
+ assert h, (
+ "expected at least one exception to have been raised at this point: "
+ "while bootstrapping {0}".format(executables_str)
+ )
msg = 'cannot bootstrap any of the {0} executables '.format(executables_str)
if abstract_spec:
msg += 'from spec "{0}" '.format(abstract_spec)
diff --git a/lib/spack/spack/cmd/modules/__init__.py b/lib/spack/spack/cmd/modules/__init__.py
index f2fd63aaa0..2ccbf4b2cf 100644
--- a/lib/spack/spack/cmd/modules/__init__.py
+++ b/lib/spack/spack/cmd/modules/__init__.py
@@ -377,9 +377,15 @@ def modules_cmd(parser, args, module_type, callbacks=callbacks):
spec_fmt += '{compiler_flags}{variants}{arch=architecture}'
msg += '\t' + s.cformat(spec_fmt) + '\n'
tty.error(msg.format(query=args.constraint))
- tty.die('In this context exactly **one** match is needed: please specify your constraints better.') # NOQA: ignore=E501
+ tty.die(
+ "In this context exactly **one** match is needed: "
+ "please specify your constraints better."
+ )
except NoSpecMatches:
msg = "the constraint '{query}' matches no package."
tty.error(msg.format(query=args.constraint))
- tty.die('In this context exactly **one** match is needed: please specify your constraints better.') # NOQA: ignore=E501
+ tty.die(
+ "In this context exactly **one** match is needed: "
+ "please specify your constraints better."
+ )
diff --git a/lib/spack/spack/cmd/style.py b/lib/spack/spack/cmd/style.py
index 252e9f7b1c..3d24228a54 100644
--- a/lib/spack/spack/cmd/style.py
+++ b/lib/spack/spack/cmd/style.py
@@ -384,7 +384,7 @@ def run_black(black_cmd, file_list, args):
output = "\n".join(
line
for line in output.split("\n")
- if not "DEPRECATION: Python 2 support will be removed" in line
+ if "DEPRECATION: Python 2 support will be removed" not in line
)
rewrite_and_print_output(output, args, pat, replacement)
diff --git a/lib/spack/spack/test/cmd/spec.py b/lib/spack/spack/test/cmd/spec.py
index e406fabe26..1dfe20c780 100644
--- a/lib/spack/spack/test/cmd/spec.py
+++ b/lib/spack/spack/test/cmd/spec.py
@@ -101,7 +101,10 @@ def test_spec_parse_unquoted_flags_report():
with pytest.raises(spack.error.SpackError) as cm:
spec('gcc cflags=-Os -pipe')
cm = str(cm.value)
- assert cm.startswith('trying to set variant "pipe" in package "gcc", but the package has no such variant [happened during concretization of gcc cflags="-Os" ~pipe]') # noqa: E501
+ assert cm.startswith(
+ 'trying to set variant "pipe" in package "gcc", but the package has no such '
+ 'variant [happened during concretization of gcc cflags="-Os" ~pipe]'
+ )
assert cm.endswith('(1) cflags=-Os -pipe => cflags="-Os -pipe"')
diff --git a/lib/spack/spack/test/link_paths.py b/lib/spack/spack/test/link_paths.py
index cafb646322..4e08a26fdf 100644
--- a/lib/spack/spack/test/link_paths.py
+++ b/lib/spack/spack/test/link_paths.py
@@ -11,10 +11,14 @@ import pytest
import spack.paths
from spack.compiler import _parse_non_system_link_dirs
-is_windows = sys.platform == 'win32'
+is_windows = sys.platform == "win32"
+drive = ""
if is_windows:
- drive_m = re.search(r'[A-Za-z]:', spack.paths.test_path)
- drive = drive_m.group() if drive_m else None
+ match = re.search(r"[A-Za-z]:", spack.paths.test_path)
+ if match:
+ drive = match.group()
+root = drive + os.sep
+
#: directory with sample compiler data
datadir = os.path.join(spack.paths.test_path, 'data',
'compiler_verbose_output')
@@ -45,25 +49,35 @@ def check_link_paths(filename, paths):
def test_icc16_link_paths():
- if is_windows:
- check_link_paths('icc-16.0.3.txt', [
- drive + r'\usr\tce\packages\intel\intel-16.0.3\compilers_and_libraries_2016.3.210\linux\compiler\lib\intel64_lin', # noqa
- drive + r'\usr\tce\packages\gcc\gcc-4.9.3\lib64\gcc\x86_64-unknown-linux-gnu\4.9.3', # noqa
- drive + r'\usr\tce\packages\gcc\gcc-4.9.3\lib64'])
- else:
- check_link_paths('icc-16.0.3.txt', [
- '/usr/tce/packages/intel/intel-16.0.3/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', # noqa
- '/usr/tce/packages/gcc/gcc-4.9.3/lib64/gcc/x86_64-unknown-linux-gnu/4.9.3', # noqa
- '/usr/tce/packages/gcc/gcc-4.9.3/lib64'])
+ prefix = os.path.join(root, "usr", "tce", "packages")
+ check_link_paths(
+ 'icc-16.0.3.txt', [
+ os.path.join(
+ prefix,
+ "intel",
+ "intel-16.0.3",
+ "compilers_and_libraries_2016.3.210",
+ "linux",
+ "compiler",
+ "lib",
+ "intel64_lin",
+ ),
+ os.path.join(
+ prefix, "gcc", "gcc-4.9.3", "lib64", "gcc", "x86_64-unknown-linux-gnu", "4.9.3"
+ ),
+ os.path.join(prefix, "gcc", "gcc-4.9.3", "lib64"),
+ ]
+ )
def test_pgi_link_paths():
- if is_windows:
- check_link_paths('pgcc-16.3.txt', [
- drive + r'\usr\tce\packages\pgi\pgi-16.3\linux86-64\16.3\lib'])
- else:
- check_link_paths('pgcc-16.3.txt', [
- '/usr/tce/packages/pgi/pgi-16.3/linux86-64/16.3/lib'])
+ check_link_paths(
+ 'pgcc-16.3.txt', [
+ os.path.join(
+ root, "usr", "tce", "packages", "pgi", "pgi-16.3", "linux86-64", "16.3", "lib"
+ )
+ ]
+ )
def test_gcc7_link_paths():
@@ -75,65 +89,68 @@ def test_clang4_link_paths():
def test_xl_link_paths():
- if is_windows:
- check_link_paths('xl-13.1.5.txt', [
- drive + r'\opt\ibm\xlsmp\4.1.5\lib',
- drive + r'\opt\ibm\xlmass\8.1.5\lib',
- drive + r'\opt\ibm\xlC\13.1.5\lib'])
- else:
- check_link_paths('xl-13.1.5.txt', [
- '/opt/ibm/xlsmp/4.1.5/lib',
- '/opt/ibm/xlmass/8.1.5/lib',
- '/opt/ibm/xlC/13.1.5/lib'])
+ check_link_paths(
+ 'xl-13.1.5.txt', [
+ os.path.join(root, "opt", "ibm", "xlsmp", "4.1.5", "lib"),
+ os.path.join(root, "opt", "ibm", "xlmass", "8.1.5", "lib"),
+ os.path.join(root, "opt", "ibm", "xlC", "13.1.5", "lib"),
+ ]
+ )
def test_cce_link_paths():
- if is_windows:
- check_link_paths('cce-8.6.5.txt', [
- drive + r'\opt\gcc\6.1.0\snos\lib64',
- drive + r'\opt\cray\dmapp\default\lib64',
- drive + r'\opt\cray\pe\mpt\7.7.0\gni\mpich-cray\8.6\lib',
- drive + r'\opt\cray\pe\libsci\17.12.1\CRAY\8.6\x86_64\lib',
- drive + r'\opt\cray\rca\2.2.16-6.0.5.0_15.34__g5e09e6d.ari\lib64',
- drive + r'\opt\cray\pe\pmi\5.0.13\lib64',
- drive + r'\opt\cray\xpmem\2.2.4-6.0.5.0_4.8__g35d5e73.ari\lib64',
- drive + r'\opt\cray\dmapp\7.1.1-6.0.5.0_49.8__g1125556.ari\lib64',
- drive + r'\opt\cray\ugni\6.0.14-6.0.5.0_16.9__g19583bb.ari\lib64',
- drive + r'\opt\cray\udreg\2.3.2-6.0.5.0_13.12__ga14955a.ari\lib64',
- drive + r'\opt\cray\alps\6.5.28-6.0.5.0_18.6__g13a91b6.ari\lib64',
- drive + r'\opt\cray\pe\atp\2.1.1\libApp',
- drive + r'\opt\cray\pe\cce\8.6.5\cce\x86_64\lib',
- drive + r'\opt\cray\wlm_detect\1.3.2-6.0.5.0_3.1__g388ccd5.ari\lib64',
- drive + r'\opt\gcc\6.1.0\snos\lib\gcc\x86_64-suse-linux\6.1.0',
- drive +
- r'\opt\cray\pe\cce\8.6.5\binutils\x86_64\x86_64-unknown-linux-gnu\lib'])
- else:
- check_link_paths('cce-8.6.5.txt', [
- '/opt/gcc/6.1.0/snos/lib64',
- '/opt/cray/dmapp/default/lib64',
- '/opt/cray/pe/mpt/7.7.0/gni/mpich-cray/8.6/lib',
- '/opt/cray/pe/libsci/17.12.1/CRAY/8.6/x86_64/lib',
- '/opt/cray/rca/2.2.16-6.0.5.0_15.34__g5e09e6d.ari/lib64',
- '/opt/cray/pe/pmi/5.0.13/lib64',
- '/opt/cray/xpmem/2.2.4-6.0.5.0_4.8__g35d5e73.ari/lib64',
- '/opt/cray/dmapp/7.1.1-6.0.5.0_49.8__g1125556.ari/lib64',
- '/opt/cray/ugni/6.0.14-6.0.5.0_16.9__g19583bb.ari/lib64',
- '/opt/cray/udreg/2.3.2-6.0.5.0_13.12__ga14955a.ari/lib64',
- '/opt/cray/alps/6.5.28-6.0.5.0_18.6__g13a91b6.ari/lib64',
- '/opt/cray/pe/atp/2.1.1/libApp',
- '/opt/cray/pe/cce/8.6.5/cce/x86_64/lib',
- '/opt/cray/wlm_detect/1.3.2-6.0.5.0_3.1__g388ccd5.ari/lib64',
- '/opt/gcc/6.1.0/snos/lib/gcc/x86_64-suse-linux/6.1.0',
- '/opt/cray/pe/cce/8.6.5/binutils/x86_64/x86_64-unknown-linux-gnu/lib'])
+ gcc = os.path.join(root, "opt", "gcc")
+ cray = os.path.join(root, "opt", "cray")
+ check_link_paths(
+ 'cce-8.6.5.txt', [
+ os.path.join(gcc, "6.1.0", "snos", "lib64"),
+ os.path.join(cray, "dmapp", "default", "lib64"),
+ os.path.join(cray, "pe", "mpt", "7.7.0", "gni", "mpich-cray", "8.6", "lib"),
+ os.path.join(cray, "pe", "libsci", "17.12.1", "CRAY", "8.6", "x86_64", "lib"),
+ os.path.join(cray, "rca", "2.2.16-6.0.5.0_15.34__g5e09e6d.ari", "lib64"),
+ os.path.join(cray, "pe", "pmi", "5.0.13", "lib64"),
+ os.path.join(cray, "xpmem", "2.2.4-6.0.5.0_4.8__g35d5e73.ari", "lib64"),
+ os.path.join(cray, "dmapp", "7.1.1-6.0.5.0_49.8__g1125556.ari", "lib64"),
+ os.path.join(cray, "ugni", "6.0.14-6.0.5.0_16.9__g19583bb.ari", "lib64"),
+ os.path.join(cray, "udreg", "2.3.2-6.0.5.0_13.12__ga14955a.ari", "lib64"),
+ os.path.join(cray, "alps", "6.5.28-6.0.5.0_18.6__g13a91b6.ari", "lib64"),
+ os.path.join(cray, "pe", "atp", "2.1.1", "libApp"),
+ os.path.join(cray, "pe", "cce", "8.6.5", "cce", "x86_64", "lib"),
+ os.path.join(cray, "wlm_detect", "1.3.2-6.0.5.0_3.1__g388ccd5.ari", "lib64"),
+ os.path.join(gcc, "6.1.0", "snos", "lib", "gcc", "x86_64-suse-linux", "6.1.0"),
+ os.path.join(
+ cray,
+ "pe",
+ "cce",
+ "8.6.5",
+ "binutils",
+ "x86_64",
+ "x86_64-unknown-linux-gnu",
+ "lib"
+ ),
+ ]
+ )
def test_clang_apple_ld_link_paths():
- if is_windows:
- check_link_paths('clang-9.0.0-apple-ld.txt', [
- drive + r'\Applications\Xcode.app\Contents\Developer\Platforms\MacOSX.platform\Developer\SDKs\MacOSX10.13.sdk\usr\lib']) # noqa
- else:
- check_link_paths('clang-9.0.0-apple-ld.txt', [
- '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk/usr/lib']) # noqa
+ check_link_paths(
+ 'clang-9.0.0-apple-ld.txt', [
+ os.path.join(
+ root,
+ "Applications",
+ "Xcode.app",
+ "Contents",
+ "Developer",
+ "Platforms",
+ "MacOSX.platform",
+ "Developer",
+ "SDKs",
+ "MacOSX10.13.sdk",
+ "usr",
+ "lib",
+ )
+ ]
+ )
def test_nag_mixed_gcc_gnu_ld_link_paths():
@@ -141,16 +158,24 @@ def test_nag_mixed_gcc_gnu_ld_link_paths():
# is used for the rpath detection. The reference compiler output is a
# result of
# '/path/to/gcc/bin/g++ -Wl,-v ./main.c'.
- if is_windows:
- check_link_paths('collect2-6.3.0-gnu-ld.txt', [
- drive + r'\scratch\local1\spack\opt\spack\gcc-6.3.0-haswell\gcc-6.5.0-4sdjgrs\lib\gcc\x86_64-pc-linux-gnu\6.5.0', # noqa
- drive + r'\scratch\local1\spack\opt\spack\gcc-6.3.0-haswell\gcc-6.5.0-4sdjgrs\lib64', # noqa
- drive + r'\scratch\local1\spack\opt\spack\gcc-6.3.0-haswell\gcc-6.5.0-4sdjgrs\lib']) # noqa
- else:
- check_link_paths('collect2-6.3.0-gnu-ld.txt', [
- '/scratch/local1/spack/opt/spack/gcc-6.3.0-haswell/gcc-6.5.0-4sdjgrs/lib/gcc/x86_64-pc-linux-gnu/6.5.0', # noqa
- '/scratch/local1/spack/opt/spack/gcc-6.3.0-haswell/gcc-6.5.0-4sdjgrs/lib64', # noqa
- '/scratch/local1/spack/opt/spack/gcc-6.3.0-haswell/gcc-6.5.0-4sdjgrs/lib']) # noqa
+ prefix = os.path.join(
+ root,
+ "scratch",
+ "local1",
+ "spack",
+ "opt",
+ "spack",
+ "gcc-6.3.0-haswell",
+ "gcc-6.5.0-4sdjgrs",
+ )
+
+ check_link_paths(
+ 'collect2-6.3.0-gnu-ld.txt', [
+ os.path.join(prefix, "lib", "gcc", "x86_64-pc-linux-gnu", "6.5.0"),
+ os.path.join(prefix, "lib64"),
+ os.path.join(prefix, "lib"),
+ ]
+ )
def test_nag_link_paths():
@@ -158,25 +183,35 @@ def test_nag_link_paths():
# and therefore 'fc' is used for the rpath detection). The reference
# compiler output is a result of
# 'nagfor -Wc=/path/to/gcc/bin/gcc -Wl,-v ./main.c'.
- if is_windows:
- check_link_paths('nag-6.2-gcc-6.5.0.txt', [
- drive + r'\scratch\local1\spack\opt\spack\gcc-6.3.0-haswell\gcc-6.5.0-4sdjgrs\lib\gcc\x86_64-pc-linux-gnu\6.5.0', # noqa
- drive + r'\scratch\local1\spack\opt\spack\gcc-6.3.0-haswell\gcc-6.5.0-4sdjgrs\lib64', # noqa
- drive + r'\scratch\local1\spack\opt\spack\gcc-6.3.0-haswell\gcc-6.5.0-4sdjgrs\lib']) # noqa
- else:
- check_link_paths('nag-6.2-gcc-6.5.0.txt', [
- '/scratch/local1/spack/opt/spack/gcc-6.3.0-haswell/gcc-6.5.0-4sdjgrs/lib/gcc/x86_64-pc-linux-gnu/6.5.0', # noqa
- '/scratch/local1/spack/opt/spack/gcc-6.3.0-haswell/gcc-6.5.0-4sdjgrs/lib64', # noqa
- '/scratch/local1/spack/opt/spack/gcc-6.3.0-haswell/gcc-6.5.0-4sdjgrs/lib']) # noqa
+ prefix = os.path.join(
+ root,
+ "scratch",
+ "local1",
+ "spack",
+ "opt",
+ "spack",
+ "gcc-6.3.0-haswell",
+ "gcc-6.5.0-4sdjgrs",
+ )
+
+ check_link_paths(
+ 'nag-6.2-gcc-6.5.0.txt', [
+ os.path.join(prefix, "lib", "gcc", "x86_64-pc-linux-gnu", "6.5.0"),
+ os.path.join(prefix, "lib64"),
+ os.path.join(prefix, "lib"),
+ ]
+ )
def test_obscure_parsing_rules():
+ paths = [
+ os.path.join(root, "first", "path"),
+ os.path.join(root, "second", "path"),
+ os.path.join(root, "third", "path"),
+ ]
+
+ # TODO: add a comment explaining why this happens
if is_windows:
- check_link_paths('obscure-parsing-rules.txt', [
- drive + r'\first\path',
- drive + r'\third\path'])
- else:
- check_link_paths('obscure-parsing-rules.txt', [
- '/first/path',
- '/second/path',
- '/third/path'])
+ paths.remove(os.path.join(root, "second", "path"))
+
+ check_link_paths('obscure-parsing-rules.txt', paths)
diff --git a/lib/spack/spack/test/url_parse.py b/lib/spack/spack/test/url_parse.py
index 08d67cfb80..6175c5ad0f 100644
--- a/lib/spack/spack/test/url_parse.py
+++ b/lib/spack/spack/test/url_parse.py
@@ -77,7 +77,10 @@ from spack.version import Version
('haxe-2.08-osx', 'haxe-2.08'),
# PyPI - wheel
('entrypoints-0.2.2-py2.py3-none-any.whl', 'entrypoints-0.2.2'),
- ('numpy-1.12.0-cp27-cp27m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl', 'numpy-1.12.0'), # noqa
+ (
+ 'numpy-1.12.0-cp27-cp27m-macosx_10_6_intel.macosx_10_9_intel.'
+ 'macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl', 'numpy-1.12.0'
+ ),
# PyPI - exe
('PyYAML-3.12.win-amd64-py3.5.exe', 'PyYAML-3.12'),
# Combinations of multiple patterns - bin, release
diff --git a/var/spack/repos/builtin/packages/albany/package.py b/var/spack/repos/builtin/packages/albany/package.py
index d7e99dd83e..7706e404dc 100644
--- a/var/spack/repos/builtin/packages/albany/package.py
+++ b/var/spack/repos/builtin/packages/albany/package.py
@@ -54,7 +54,12 @@ class Albany(CMakePackage):
# Add dependencies
depends_on('mpi')
- depends_on('trilinos~superlu-dist+isorropia+tempus+rythmos+teko+intrepid+intrepid2+minitensor+phalanx+nox+piro+rol+shards+stk+superlu@master')
+ depends_on(
+ 'trilinos'
+ '~superlu-dist+isorropia+tempus+rythmos+teko+intrepid+intrepid2'
+ '+minitensor+phalanx+nox+piro+rol+shards+stk+superlu'
+ '@master'
+ )
def cmake_args(self):
spec = self.spec
diff --git a/var/spack/repos/builtin/packages/alps/package.py b/var/spack/repos/builtin/packages/alps/package.py
index ab1e90cd3d..58cc24cead 100644
--- a/var/spack/repos/builtin/packages/alps/package.py
+++ b/var/spack/repos/builtin/packages/alps/package.py
@@ -5,6 +5,10 @@
from spack.package import *
+# Refs for building from source and recipes
+# https://alps.comp-phys.org/mediawiki/index.php/Building_ALPS_from_source
+# https://github.com/easybuilders/easybuild-easyconfigs/tree/master/easybuild/easyconfigs/a/ALPS
+# https://github.com/conda-forge/alps-feedstock/tree/master/recipe
class Alps(CMakePackage):
"""Algorithms for Physics Simulations
@@ -17,13 +21,12 @@ class Alps(CMakePackage):
version('2.3.0', sha256='e64208d1e5acdd6f569277413c4867e1fa366cf4a224570eacbf1e9939fca2d2')
- # Refs for building from source and recipes
- # https://alps.comp-phys.org/mediawiki/index.php/Building_ALPS_from_source
- # https://github.com/easybuilders/easybuild-easyconfigs/tree/master/easybuild/easyconfigs/a/ALPS
- # https://github.com/conda-forge/alps-feedstock/tree/master/recipe
-
# Package failed to build with boost version >= 1.64
- depends_on('boost@:1.63.0 +chrono +date_time +filesystem +iostreams +mpi +numpy +program_options +python +regex +serialization +system +test +thread +timer')
+ depends_on(
+ 'boost@:1.63.0'
+ '+chrono +date_time +filesystem +iostreams +mpi +numpy +program_options'
+ '+python +regex +serialization +system +test +thread +timer'
+ )
depends_on('fftw')
depends_on('hdf5 ~mpi+hl')
depends_on('lapack')
diff --git a/var/spack/repos/builtin/packages/bazel/package.py b/var/spack/repos/builtin/packages/bazel/package.py
index e03fc257de..cc4279c9b0 100644
--- a/var/spack/repos/builtin/packages/bazel/package.py
+++ b/var/spack/repos/builtin/packages/bazel/package.py
@@ -118,7 +118,12 @@ class Bazel(Package):
version('0.1.4', sha256='f3c395f5cd78cfef96f4008fe842f327bc8b03b77f46999387bc0ad223b5d970')
version('0.1.1', sha256='c6ae19610b936a0aa940b44a3626d6e660fc457a8187d295cdf0b21169453d20')
- variant('nodepfail', default=True, description='Disable failing dependency checks due to injected absolute paths - required for most builds using bazel with spack')
+ variant(
+ 'nodepfail',
+ default=True,
+ description='Disable failing dependency checks due to injected absolute paths - '
+ 'required for most builds using bazel with spack'
+ )
depends_on('java', type=('build', 'run'))
depends_on('java@11', when='@5.3:', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/camellia/package.py b/var/spack/repos/builtin/packages/camellia/package.py
index 24eb3bc404..e96351039b 100644
--- a/var/spack/repos/builtin/packages/camellia/package.py
+++ b/var/spack/repos/builtin/packages/camellia/package.py
@@ -20,7 +20,12 @@ class Camellia(CMakePackage):
variant('moab', default=True, description='Compile with MOAB to include support for reading standard mesh formats')
- depends_on('trilinos+amesos+amesos2+belos+epetra+epetraext+exodus+ifpack+ifpack2+intrepid+intrepid2+kokkos+ml+muelu+sacado+shards+tpetra+zoltan+mumps+superlu-dist+hdf5+mpi@master,12.12.1:')
+ depends_on(
+ 'trilinos'
+ '+amesos+amesos2+belos+epetra+epetraext+exodus+ifpack+ifpack2+intrepid+intrepid2'
+ '+kokkos+ml+muelu+sacado+shards+tpetra+zoltan+mumps+superlu-dist+hdf5+mpi'
+ '@master,12.12.1:'
+ )
depends_on('moab@:4', when='+moab')
# Cameilla needs hdf5 but the description "hdf5@:1.8" is
diff --git a/var/spack/repos/builtin/packages/damaris/package.py b/var/spack/repos/builtin/packages/damaris/package.py
index 813b2d8289..7e8901a887 100644
--- a/var/spack/repos/builtin/packages/damaris/package.py
+++ b/var/spack/repos/builtin/packages/damaris/package.py
@@ -29,11 +29,21 @@ class Damaris(CMakePackage):
variant('visit', default=False, description='Enables the VisIt visualization plugin')
variant('examples', default=False, description='Enables compilation and installation of the examples code')
variant('docs', default=False, description='Enables the building of dOxygen documentation')
- variant('python', default=False, description='Enables building of Python enabled Damaris library - boost::python boost::numpy needed')
+ variant(
+ 'python',
+ default=False,
+ description='Enables building of Python enabled Damaris library - '
+ 'boost::python boost::numpy needed'
+ )
depends_on('mpi')
depends_on('cmake@3.18.0:', type=('build'))
- depends_on('boost +exception+locale+system+serialization+chrono+atomic+container+regex+thread+log+filesystem+date_time @1.67:')
+ depends_on(
+ 'boost'
+ '+exception+locale+system+serialization+chrono+atomic'
+ '+container+regex+thread+log+filesystem+date_time'
+ '@1.67:'
+ )
depends_on('xsd')
depends_on('xerces-c')
depends_on('hdf5@1.8.20:', when='+hdf5')
diff --git a/var/spack/repos/builtin/packages/denovogear/package.py b/var/spack/repos/builtin/packages/denovogear/package.py
index bb77962cbd..b5356d9e0a 100644
--- a/var/spack/repos/builtin/packages/denovogear/package.py
+++ b/var/spack/repos/builtin/packages/denovogear/package.py
@@ -19,7 +19,11 @@ class Denovogear(CMakePackage):
version('1.1.0', sha256='f818f80cd67183294c8aae312cad8311e6a9abede1f687567bb079d29f79c005')
depends_on('cmake@3.1:', type=('build'))
- depends_on('boost@1.47:1.60 +exception+filesystem+system+serialization+graph+iostreams+regex+math+container', type=('build'))
+ depends_on(
+ 'boost@1.47:1.60'
+ '+exception+filesystem+system+serialization+graph+iostreams+regex+math+container',
+ type='build',
+ )
depends_on('htslib@1.2:', type=('build'))
depends_on('eigen', type=('build'))
depends_on('zlib', type=('link'))
diff --git a/var/spack/repos/builtin/packages/erne/package.py b/var/spack/repos/builtin/packages/erne/package.py
index 762df38693..6a5e6be8ea 100644
--- a/var/spack/repos/builtin/packages/erne/package.py
+++ b/var/spack/repos/builtin/packages/erne/package.py
@@ -17,7 +17,12 @@ class Erne(AutotoolsPackage):
variant('mpi', default=False,
description='Build with OpenMPI support')
- depends_on('boost@1.40.0: +exception+filesystem+system+chrono+serialization+random+atomic+iostreams+regex+thread+container', type=('build', 'link', 'run'))
+ depends_on(
+ 'boost@1.40.0:'
+ '+exception+filesystem+system+chrono+serialization+random'
+ '+atomic+iostreams+regex+thread+container',
+ type=('build', 'link', 'run')
+ )
depends_on('openmpi', type=('build', 'run'), when='+mpi')
def configure_args(self):
diff --git a/var/spack/repos/builtin/packages/express/package.py b/var/spack/repos/builtin/packages/express/package.py
index 76d076a439..dcc83672d0 100644
--- a/var/spack/repos/builtin/packages/express/package.py
+++ b/var/spack/repos/builtin/packages/express/package.py
@@ -22,7 +22,11 @@ class Express(CMakePackage):
version('1.5.2', sha256='25a63cca3dac6bd0daf04d2f0b2275e47d2190c90522bd231b1d7a875a59a52e')
version('1.5.1', sha256='fa3522de9cc25f1ede22fa196928912a6da2a2038681911115ec3e4da3d61293')
- depends_on('boost+date_time+exception+filesystem+system+chrono+atomic+container+math+thread+program_options')
+ depends_on(
+ 'boost'
+ '+date_time+exception+filesystem+system+chrono'
+ '+atomic+container+math+thread+program_options'
+ )
depends_on('bamtools')
depends_on('zlib')
diff --git a/var/spack/repos/builtin/packages/faodel/package.py b/var/spack/repos/builtin/packages/faodel/package.py
index 8cf5420da8..1d2d04e717 100644
--- a/var/spack/repos/builtin/packages/faodel/package.py
+++ b/var/spack/repos/builtin/packages/faodel/package.py
@@ -36,7 +36,11 @@ class Faodel(CMakePackage):
variant('serializer', default='xdr', values=('xdr', 'cereal'), description='Use Cereal to serialize NNTI data structures else XDR')
depends_on('mpi', when='+mpi')
- depends_on('boost@1.60.0: +program_options+exception+locale+system+chrono+log+serialization+atomic+container+regex+thread+date_time')
+ depends_on(
+ 'boost@1.60.0:'
+ '+program_options+exception+locale+system+chrono+log+serialization'
+ '+atomic+container+regex+thread+date_time'
+ )
depends_on('cmake@3.8.0:', type='build')
depends_on('hdf5+mpi', when='+hdf5+mpi')
depends_on('hdf5~mpi', when='+hdf5~mpi')
diff --git a/var/spack/repos/builtin/packages/flexi/package.py b/var/spack/repos/builtin/packages/flexi/package.py
index f083ea34d9..7bc940db62 100644
--- a/var/spack/repos/builtin/packages/flexi/package.py
+++ b/var/spack/repos/builtin/packages/flexi/package.py
@@ -22,10 +22,26 @@ class Flexi(CMakePackage):
variant('2d', default=False, description='If set to True the code will run in two-dimensional mode')
variant('eqnsysname', default='navierstokes', values=('navierstokes', 'linearscalaradvection', 'rans_sa'), multi=False, description='Defines the equation system')
variant('fv', default=False, description='Enables the usage of the finite volume subcell shock capturing mechanism')
- variant('lifting', default='br1', values=('br1', 'br2'), multi=False, description='Two different lifting methods for the parabolic part of the equation system available')
+ variant(
+ 'lifting',
+ default='br1',
+ values=('br1', 'br2'),
+ multi=False,
+ description=(
+ 'Two different lifting methods for the parabolic part of '
+ 'the equation system available'
+ )
+ )
variant('nodetype', default='GAUSS', values=('GAUSS', 'GAUSS-LOBATTO'), multi=False, description='Space discretization basis function')
variant('split', default=False, description='Split form of the discontinuous Galerkin operator')
- variant('parabolic', default=True, description=' Defines, whether the parabolic part of the chosen system should be included or not')
+ variant(
+ 'parabolic',
+ default=True,
+ description=(
+ 'Defines whether the parabolic part of the chosen system '
+ 'should be included or not'
+ )
+ )
variant('testcase', default='default', values=('default', 'taylorgreenvortex', 'phill', 'channel', 'riemann2d'), multi=False, description='Defines the used test case')
variant('viscosity', default='constant', values=('constant', 'sutherland', 'powerlaw'), multi=False, description='Defines modeling approach for viscosity')
variant('eddy_viscosity', default=False, description='Enable eddy viscosity')
diff --git a/var/spack/repos/builtin/packages/folly/package.py b/var/spack/repos/builtin/packages/folly/package.py
index 87a77e2bf7..ed274bba9e 100644
--- a/var/spack/repos/builtin/packages/folly/package.py
+++ b/var/spack/repos/builtin/packages/folly/package.py
@@ -26,8 +26,16 @@ class Folly(CMakePackage):
# folly requires gcc 5+ and a version of boost compiled with >= C++14
variant('cxxstd', default='14', values=('14', '17'), multi=False, description='Use the specified C++ standard when building.')
- depends_on('boost+context+container+exception+filesystem+program_options+regex+serialization+system+thread cxxstd=14', when='cxxstd=14')
- depends_on('boost+context+container+exception+filesystem+program_options+regex+serialization+system+thread cxxstd=17', when='cxxstd=17')
+ depends_on(
+ 'boost+context+container+exception+filesystem+program_options'
+ '+regex+serialization+system+thread cxxstd=14',
+ when='cxxstd=14'
+ )
+ depends_on(
+ 'boost+context+container+exception+filesystem+program_options'
+ '+regex+serialization+system+thread cxxstd=17',
+ when='cxxstd=17'
+ )
# required dependencies
depends_on('gflags')
diff --git a/var/spack/repos/builtin/packages/gpi-space/package.py b/var/spack/repos/builtin/packages/gpi-space/package.py
index b023e6ef68..6354496be8 100644
--- a/var/spack/repos/builtin/packages/gpi-space/package.py
+++ b/var/spack/repos/builtin/packages/gpi-space/package.py
@@ -50,7 +50,11 @@ class GpiSpace(CMakePackage):
type=("build", "run"))
depends_on("pkgconfig",
type="build")
- depends_on("boost@1.62.0:1.63.0 +atomic +chrono +coroutine +context +date_time +filesystem +iostreams +program_options +random +regex +serialization +test +timer cxxstd=14")
+ depends_on(
+ "boost@1.62.0:1.63.0"
+ "+atomic +chrono +coroutine +context +date_time +filesystem +iostreams"
+ " +program_options +random +regex +serialization +test +timer cxxstd=14"
+ )
depends_on("hwloc@1.10: +libudev ~shared ~libxml2")
depends_on("libssh2@1.7:")
depends_on("openssl@0.9:")
diff --git a/var/spack/repos/builtin/packages/gunrock/package.py b/var/spack/repos/builtin/packages/gunrock/package.py
index 6c4d1de56a..eac2f0d07f 100644
--- a/var/spack/repos/builtin/packages/gunrock/package.py
+++ b/var/spack/repos/builtin/packages/gunrock/package.py
@@ -32,7 +32,14 @@ class Gunrock(CMakePackage, CudaPackage):
variant('lib', default=True, description='Build main gunrock library')
variant('shared_libs', default=True, description='Turn off to build for static libraries')
variant('tests', default=True, description='Build functional tests / examples')
- variant('mgpu_tests', default=False, description='Builds Gunrock applications and enables the ctest framework for single GPU implementations')
+ variant(
+ 'mgpu_tests',
+ default=False,
+ description=(
+ 'Builds Gunrock applications and enables the ctest framework '
+ 'for single GPU implementations'
+ )
+ )
variant('cuda_verbose_ptxas', default=False, description='Enable verbose output from the PTXAS assembler')
variant('google_tests', default=False, description='Build unit tests using googletest')
variant('code_coverage', default=False, description="run code coverage on Gunrock's source code")
diff --git a/var/spack/repos/builtin/packages/hip/package.py b/var/spack/repos/builtin/packages/hip/package.py
index 99bea4be77..bca2149da8 100644
--- a/var/spack/repos/builtin/packages/hip/package.py
+++ b/var/spack/repos/builtin/packages/hip/package.py
@@ -130,8 +130,16 @@ class Hip(CMakePackage):
# uses the ROCM_PATH variable again; just to be sure we set it to an empty
# string.
patch('0001-Make-it-possible-to-specify-the-package-folder-of-ro.patch', when='@3.5.0:4.5.3')
- patch('0010-Improve-compilation-without-git-repo-and-remove-compiler-rt-linkage-for-host.5.0.0.patch', when='@5.0.0')
- patch('0011-Improve-compilation-without-git-repo-and-remove-compiler-rt-linkage-for-host.5.0.2.patch', when='@5.0.2:')
+ patch(
+ '0010-Improve-compilation-without-git-repo-and-remove-compiler-rt-linkage-for-host'
+ '.5.0.0.patch',
+ when='@5.0.0'
+ )
+ patch(
+ '0011-Improve-compilation-without-git-repo-and-remove-compiler-rt-linkage-for-host'
+ '.5.0.2.patch',
+ when='@5.0.2:'
+ )
# See https://github.com/ROCm-Developer-Tools/HIP/pull/2141
patch('0002-Fix-detection-of-HIP_CLANG_ROOT.patch', when='@:3.9.0')
@@ -140,8 +148,16 @@ class Hip(CMakePackage):
patch('0003-Improve-compilation-without-git-repo.3.7.0.patch', when='@3.7.0:3.9.0')
patch('0003-Improve-compilation-without-git-repo.3.10.0.patch', when='@3.10.0:4.0.0')
patch('0003-Improve-compilation-without-git-repo.4.1.0.patch', when='@4.1.0')
- patch('0003-Improve-compilation-without-git-repo-and-remove-compiler-rt-linkage-for-host.4.2.0.patch', when='@4.2.0:4.3.2')
- patch('0009-Improve-compilation-without-git-repo-and-remove-compiler-rt-linkage-for-host_disabletests.4.5.0.patch', when='@4.5.0:4.5.3')
+ patch(
+ '0003-Improve-compilation-without-git-repo-and-remove-compiler-rt-linkage-for-host'
+ '.4.2.0.patch',
+ when='@4.2.0:4.3.2'
+ )
+ patch(
+ '0009-Improve-compilation-without-git-repo-and-remove-compiler-rt-linkage-for-host'
+ '_disabletests.4.5.0.patch',
+ when='@4.5.0:4.5.3'
+ )
# See https://github.com/ROCm-Developer-Tools/HIP/pull/2219
patch('0004-Drop-clang-rt-builtins-linking-on-hip-host.3.7.0.patch', when='@3.7.0:3.9.0')
patch('0004-Drop-clang-rt-builtins-linking-on-hip-host.3.10.0.patch', when='@3.10.0:4.1.0')
diff --git a/var/spack/repos/builtin/packages/julia/package.py b/var/spack/repos/builtin/packages/julia/package.py
index 9b79e1467e..389df30d91 100644
--- a/var/spack/repos/builtin/packages/julia/package.py
+++ b/var/spack/repos/builtin/packages/julia/package.py
@@ -52,7 +52,11 @@ class Julia(MakefilePackage):
# Note, we just use link_llvm_dylib so that we not only get a libLLVM,
# but also so that llvm-config --libfiles gives only the dylib. Without
# it it also gives static libraries, and breaks Julia's build.
- depends_on('llvm targets=amdgpu,bpf,nvptx,webassembly version_suffix=jl +link_llvm_dylib ~internal_unwind')
+ depends_on(
+ "llvm"
+ " targets=amdgpu,bpf,nvptx,webassembly"
+ " version_suffix=jl +link_llvm_dylib ~internal_unwind"
+ )
depends_on('libuv', when='@:1.7')
depends_on('libuv-julia', when='@1.8:')
diff --git a/var/spack/repos/builtin/packages/libmaus2/package.py b/var/spack/repos/builtin/packages/libmaus2/package.py
index 3a4c818c7b..6df396bdab 100644
--- a/var/spack/repos/builtin/packages/libmaus2/package.py
+++ b/var/spack/repos/builtin/packages/libmaus2/package.py
@@ -20,7 +20,13 @@ class Libmaus2(AutotoolsPackage):
depends_on('libtool', type='build')
depends_on('m4', type='build')
- conflicts('%gcc@:7.9', msg="libmaus2 uses std::filesystem. std::filesystem requires greater than or equal to GCC 8.")
+ conflicts(
+ '%gcc@:7.9',
+ msg=(
+ "libmaus2 uses std::filesystem. "
+ "std::filesystem requires greater than or equal to GCC 8."
+ )
+ )
def setup_build_environment(self, env):
if self.spec.satisfies('%gcc@8.0:8.9') or self.spec.satisfies('%fj'):
diff --git a/var/spack/repos/builtin/packages/llvm-amdgpu/package.py b/var/spack/repos/builtin/packages/llvm-amdgpu/package.py
index ce74666fe5..be2fb26d99 100644
--- a/var/spack/repos/builtin/packages/llvm-amdgpu/package.py
+++ b/var/spack/repos/builtin/packages/llvm-amdgpu/package.py
@@ -39,7 +39,14 @@ class LlvmAmdgpu(CMakePackage):
version('3.5.0', sha256='4878fa85473b24d88edcc89938441edc85d2e8a785e567b7bd7ce274ecc2fd9c', deprecated=True)
variant('build_type', default='Release', values=("Release", "Debug", "RelWithDebInfo"), description='CMake build type')
- variant('rocm-device-libs', default=True, description='Build ROCm device libs as external LLVM project instead of a standalone spack package.')
+ variant(
+ 'rocm-device-libs',
+ default=True,
+ description=(
+ 'Build ROCm device libs as external LLVM project instead of a '
+ 'standalone spack package.'
+ )
+ )
variant('openmp', default=False, description='Enable OpenMP')
variant(
'llvm_dylib',
diff --git a/var/spack/repos/builtin/packages/mivisionx/package.py b/var/spack/repos/builtin/packages/mivisionx/package.py
index c31ea99741..649569d68e 100644
--- a/var/spack/repos/builtin/packages/mivisionx/package.py
+++ b/var/spack/repos/builtin/packages/mivisionx/package.py
@@ -78,7 +78,12 @@ class Mivisionx(CMakePackage):
depends_on('cmake@3.5:', type='build')
depends_on('ffmpeg@:4', type='build')
depends_on('protobuf@:3', type='build')
- depends_on('opencv@:3.4 +calib3d+features2d+highgui+imgcodecs+imgproc+video+videoio+flann+photo+objdetect', type='build')
+ depends_on(
+ 'opencv@:3.4'
+ '+calib3d+features2d+highgui+imgcodecs+imgproc'
+ '+video+videoio+flann+photo+objdetect',
+ type='build'
+ )
depends_on('rocm-opencl@3.5.0', when='@1.7')
depends_on('rocm-cmake@3.5.0', type='build', when='@1.7')
depends_on('miopen-opencl@3.5.0', when='@1.7')
diff --git a/var/spack/repos/builtin/packages/music/package.py b/var/spack/repos/builtin/packages/music/package.py
index 7f03830f87..b999da1e9d 100644
--- a/var/spack/repos/builtin/packages/music/package.py
+++ b/var/spack/repos/builtin/packages/music/package.py
@@ -9,7 +9,9 @@ from spack.package import *
class Music(CMakePackage):
- """MUSIC (Multi-Scale Initial Conditions for Cosmological Simulations) introduced in [Hahn and Abel][1]
+ """MUSIC (Multi-Scale Initial Conditions for Cosmological Simulations).
+
+ Introduced in [Hahn and Abel][1].
[1]: https://arxiv.org/abs/1103.6031
"""
@@ -21,7 +23,14 @@ class Music(CMakePackage):
version("2021-12-01", commit="6747c54f3b73ec36719c265fd96362849a83cb45")
- variant("hdf5", default=False, description="Compile with HDF5. Some MUSIC output plug-ins---such as ENZO, Arepo and the MUSIC generic format---require HDF5.")
+ variant(
+ "hdf5",
+ default=False,
+ description=(
+ "Compile with HDF5. Required by Some MUSIC output plug-ins "
+ "(e.g., ENZO, Arepo and the MUSIC generic format"
+ ),
+ )
variant("single_prec", default=False, description="Enable single-precision")
depends_on("fftw@3:")
diff --git a/var/spack/repos/builtin/packages/nalu-wind/package.py b/var/spack/repos/builtin/packages/nalu-wind/package.py
index cc8584d275..ac426e9fe3 100644
--- a/var/spack/repos/builtin/packages/nalu-wind/package.py
+++ b/var/spack/repos/builtin/packages/nalu-wind/package.py
@@ -52,7 +52,11 @@ class NaluWind(CMakePackage, CudaPackage):
depends_on('mpi')
depends_on('yaml-cpp@0.5.3:')
- depends_on('trilinos@stable: +exodus+tpetra+muelu+belos+ifpack2+amesos2+zoltan+stk+boost~superlu-dist~superlu+hdf5+shards~hypre+gtest')
+ depends_on(
+ 'trilinos@stable:'
+ '+exodus+tpetra+muelu+belos+ifpack2+amesos2+zoltan+stk+boost'
+ '~superlu-dist~superlu+hdf5+shards~hypre+gtest'
+ )
depends_on('trilinos~cuda~wrapper', when='~cuda')
# Cannot build Trilinos as a shared library with STK on Darwin
# https://github.com/trilinos/Trilinos/issues/2994
diff --git a/var/spack/repos/builtin/packages/nalu/package.py b/var/spack/repos/builtin/packages/nalu/package.py
index bd4baa2c9d..12a4adda3a 100644
--- a/var/spack/repos/builtin/packages/nalu/package.py
+++ b/var/spack/repos/builtin/packages/nalu/package.py
@@ -35,7 +35,12 @@ class Nalu(CMakePackage):
# Cannot build Trilinos as a shared library with STK on Darwin
# which is why we have a 'shared' variant for Nalu
# https://github.com/trilinos/Trilinos/issues/2994
- depends_on('trilinos+mpi+exodus+tpetra+muelu+belos+ifpack2+amesos2+zoltan+stk+boost~superlu-dist+superlu+hdf5+shards~hypre@master')
+ depends_on(
+ 'trilinos'
+ '+mpi+exodus+tpetra+muelu+belos+ifpack2+amesos2+zoltan+stk+boost'
+ '~superlu-dist+superlu+hdf5+shards~hypre'
+ '@master'
+ )
depends_on('trilinos~shared', when='~shared')
# Optional dependencies
depends_on('tioga', when='+tioga+shared')
diff --git a/var/spack/repos/builtin/packages/nektar/package.py b/var/spack/repos/builtin/packages/nektar/package.py
index c9941378ad..b7c92a7811 100644
--- a/var/spack/repos/builtin/packages/nektar/package.py
+++ b/var/spack/repos/builtin/packages/nektar/package.py
@@ -27,7 +27,11 @@ class Nektar(CMakePackage):
depends_on('blas')
depends_on('lapack')
- depends_on('boost@1.56.0: +iostreams+exception+filesystem+system+chrono+serialization+atomic+regex+math+thread+container')
+ depends_on(
+ 'boost@1.56.0:'
+ '+iostreams+exception+filesystem+system+chrono+serialization'
+ '+atomic+regex+math+thread+container'
+ )
depends_on('tinyxml', when='platform=darwin')
depends_on('mpi', when='+mpi')
diff --git a/var/spack/repos/builtin/packages/omnitrace/package.py b/var/spack/repos/builtin/packages/omnitrace/package.py
index 7ce19c9a89..6c2ba25639 100644
--- a/var/spack/repos/builtin/packages/omnitrace/package.py
+++ b/var/spack/repos/builtin/packages/omnitrace/package.py
@@ -27,8 +27,22 @@ class Omnitrace(CMakePackage):
variant('tau', default=False, description='Enable support for using TAU markers in omnitrace instrumentation')
variant('caliper', default=False, description='Enable support for using Caliper markers in omnitrace instrumentation')
variant('perfetto_tools', default=False, description='Install perfetto tools (e.g. traced, perfetto)')
- variant('mpi', default=False, description='Enable intercepting MPI functions and aggregating output during finalization (requires target application to use same MPI installation)')
- variant('mpi_headers', default=True, description='Enable intercepting MPI functions but w/o support for aggregating output (target application can use any MPI installation)')
+ variant(
+ 'mpi',
+ default=False,
+ description=(
+ 'Enable intercepting MPI functions and aggregating output during finalization '
+ '(requires target application to use same MPI installation)'
+ )
+ )
+ variant(
+ 'mpi_headers',
+ default=True,
+ description=(
+ 'Enable intercepting MPI functions but w/o support for aggregating output '
+ '(target application can use any MPI installation)'
+ )
+ )
extends('python', when='+python')
diff --git a/var/spack/repos/builtin/packages/percept/package.py b/var/spack/repos/builtin/packages/percept/package.py
index 116ec1841e..bea0bb247b 100644
--- a/var/spack/repos/builtin/packages/percept/package.py
+++ b/var/spack/repos/builtin/packages/percept/package.py
@@ -31,7 +31,13 @@ class Percept(CMakePackage):
# See https://github.com/spack/spack/pull/22303 for reference
depends_on(Boost.with_default_variants)
depends_on('yaml-cpp+pic~shared@0.5.3:')
- depends_on('trilinos~shared+exodus+mpi+tpetra+epetra+epetraext+muelu+belos+ifpack2+amesos2+zoltan+stk+boost~superlu-dist+superlu+hdf5+aztec+sacado~openmp+shards+intrepid@master,12.14.1:')
+ depends_on(
+ 'trilinos'
+ '~shared+exodus+mpi+tpetra+epetra+epetraext+muelu+belos+ifpack2+amesos2'
+ '+zoltan+stk+boost~superlu-dist+superlu+hdf5+aztec+sacado'
+ '~openmp+shards+intrepid'
+ '@master,12.14.1:'
+ )
def cmake_args(self):
spec = self.spec
diff --git a/var/spack/repos/builtin/packages/postgis/package.py b/var/spack/repos/builtin/packages/postgis/package.py
index 9101f5fa50..1c5c62e0e5 100644
--- a/var/spack/repos/builtin/packages/postgis/package.py
+++ b/var/spack/repos/builtin/packages/postgis/package.py
@@ -20,7 +20,14 @@ class Postgis(AutotoolsPackage):
version('3.0.0', sha256='c06fd2cd5cea0119106ffe17a7235d893c2bbe6f4b63c8617c767630973ba594')
version('2.5.3', sha256='72e8269d40f981e22fb2b78d3ff292338e69a4f5166e481a77b015e1d34e559a')
- variant('gui', default=False, description='Build with GUI support, creating shp2pgsql-gui graphical interface to shp2pgsql')
+ variant(
+ 'gui',
+ default=False,
+ description=(
+ 'Build with GUI support, creating shp2pgsql-gui graphical interface '
+ 'to shp2pgsql'
+ )
+ )
# Refs:
# https://postgis.net/docs/postgis_installation.html
diff --git a/var/spack/repos/builtin/packages/py-abipy/package.py b/var/spack/repos/builtin/packages/py-abipy/package.py
index 5af2e8c754..325b726652 100644
--- a/var/spack/repos/builtin/packages/py-abipy/package.py
+++ b/var/spack/repos/builtin/packages/py-abipy/package.py
@@ -18,7 +18,15 @@ class PyAbipy(PythonPackage):
variant('gui', default=False, description='Build the GUI')
variant('ipython', default=False, description='Build IPython support')
- extends('python', ignore='bin/(feff_.*|gaussian_analyzer|get_environment|html2text|nc3tonc4|nc4tonc3|ncinfo|pmg|pydii|tabulate|tqdm)')
+ extends(
+ 'python',
+ ignore=(
+ 'bin/('
+ 'feff_.*|gaussian_analyzer|get_environment|html2text|'
+ 'nc3tonc4|nc4tonc3|ncinfo|pmg|pydii|tabulate|tqdm'
+ ')'
+ )
+ )
depends_on('python@2.7:')
diff --git a/var/spack/repos/builtin/packages/r3d/package.py b/var/spack/repos/builtin/packages/r3d/package.py
index fddf52e69a..e5fb9eb704 100644
--- a/var/spack/repos/builtin/packages/r3d/package.py
+++ b/var/spack/repos/builtin/packages/r3d/package.py
@@ -21,7 +21,14 @@ class R3d(CMakePackage):
version('2018-12-19', commit='47308f68c782ed3227d3dab1eff24d41f6421f21', deprecated=True)
version('2018-01-07', commit='d6799a582256a120ef3bd7e18959e96cba0e5495', deprecated=True)
- variant("r3d_max_verts", default='0', description="Maximum number of vertices allowed in a polyhedron (versions 2021-03-10 or later)")
+ variant(
+ "r3d_max_verts",
+ default='0',
+ description=(
+ "Maximum number of vertices allowed in a polyhedron "
+ "(versions 2021-03-10 or later)"
+ )
+ )
# Bypass CMake for older builds
variant("test", default=False, description="Build R3D regression tests (versions 2019-04-24 or earlier)")
diff --git a/var/spack/repos/builtin/packages/relion/package.py b/var/spack/repos/builtin/packages/relion/package.py
index 68b67b695a..a8bd0626e8 100644
--- a/var/spack/repos/builtin/packages/relion/package.py
+++ b/var/spack/repos/builtin/packages/relion/package.py
@@ -50,7 +50,14 @@ class Relion(CMakePackage, CudaPackage):
# these new values were added in relion 3
# do not seem to cause problems with < 3
variant('mklfft', default=True, description='Use MKL rather than FFTW for FFT')
- variant('allow_ctf_in_sagd', default=True, description='Allow CTF-modulation in SAGD, as specified in Claim 1 of patent US10,282,513B2')
+ variant(
+ 'allow_ctf_in_sagd',
+ default=True,
+ description=(
+ 'Allow CTF-modulation in SAGD, '
+ 'as specified in Claim 1 of patent US10,282,513B2'
+ )
+ )
variant('altcpu', default=False, description='Use CPU acceleration', when='~cuda')
variant('external_motioncor2',
diff --git a/var/spack/repos/builtin/packages/salmon/package.py b/var/spack/repos/builtin/packages/salmon/package.py
index 3a5507bbfb..367c770d20 100644
--- a/var/spack/repos/builtin/packages/salmon/package.py
+++ b/var/spack/repos/builtin/packages/salmon/package.py
@@ -23,8 +23,18 @@ class Salmon(CMakePackage):
values=('DEBUG', 'RELEASE'))
depends_on('tbb')
- depends_on('boost@1.66.0:+program_options+exception+filesystem+system+chrono+serialization+random+graph+timer+iostreams+math+thread+container', when='@:0.14.1')
- depends_on('boost@1.72.0:+program_options+exception+filesystem+system+chrono+serialization+random+graph+timer+iostreams+math+thread+container', when='@1.4.0:')
+ depends_on(
+ 'boost@1.66.0:'
+ '+program_options+exception+filesystem+system+chrono+serialization'
+ '+random+graph+timer+iostreams+math+thread+container',
+ when='@:0.14.1',
+ )
+ depends_on(
+ 'boost@1.72.0:'
+ '+program_options+exception+filesystem+system+chrono+serialization'
+ '+random+graph+timer+iostreams+math+thread+container',
+ when='@1.4.0:',
+ )
depends_on('cereal')
depends_on('jemalloc')
depends_on('xz')
diff --git a/var/spack/repos/builtin/packages/scotch/package.py b/var/spack/repos/builtin/packages/scotch/package.py
index 644eff32eb..95bd599326 100644
--- a/var/spack/repos/builtin/packages/scotch/package.py
+++ b/var/spack/repos/builtin/packages/scotch/package.py
@@ -148,7 +148,11 @@ class Scotch(CMakePackage):
),
'RANLIB = echo',
'AR = $(CC)',
- 'ARFLAGS = -dynamiclib $(LDFLAGS) -Wl,-install_name -Wl,%s/$(notdir $@) -undefined dynamic_lookup -o ' % prefix.lib # noqa
+ (
+ 'ARFLAGS = -dynamiclib $(LDFLAGS) '
+ '-Wl,-install_name -Wl,%s/$(notdir $@) '
+ '-undefined dynamic_lookup -o '
+ ) % prefix.lib,
])
else:
makefile_inc.extend([
diff --git a/var/spack/repos/builtin/packages/shiny-server/package.py b/var/spack/repos/builtin/packages/shiny-server/package.py
index d627469da1..036cd124ce 100644
--- a/var/spack/repos/builtin/packages/shiny-server/package.py
+++ b/var/spack/repos/builtin/packages/shiny-server/package.py
@@ -45,7 +45,11 @@ class ShinyServer(CMakePackage):
bash = which('bash')
mkdirp('build')
bash('-c', 'bin/npm --python="$PYTHON" install')
- bash('-c', 'bin/node ./ext/node/lib/node_modules/npm/node_modules/node-gyp/bin/node-gyp.js --python="$PYTHON" rebuild') # noqa: E501
+ bash(
+ '-c',
+ 'bin/node ./ext/node/lib/node_modules/npm/node_modules/node-gyp/bin/node-gyp.js '
+ '--python="$PYTHON" rebuild'
+ )
def setup_run_environment(self, env):
env.prepend_path('PATH', join_path(self.prefix, 'shiny-server', 'bin'))
diff --git a/var/spack/repos/builtin/packages/strelka/package.py b/var/spack/repos/builtin/packages/strelka/package.py
index 19ae0e81cb..cb473c705a 100644
--- a/var/spack/repos/builtin/packages/strelka/package.py
+++ b/var/spack/repos/builtin/packages/strelka/package.py
@@ -32,4 +32,8 @@ class Strelka(CMakePackage):
depends_on('zlib')
depends_on('bzip2')
depends_on('cmake@2.8.5:', type='build')
- depends_on('boost@1.56.0: +program_options+exception+filesystem+system+chrono+serialization+timer+container+test+math')
+ depends_on(
+ 'boost@1.56.0:'
+ '+program_options+exception+filesystem+system+chrono+serialization+timer'
+ '+container+test+math'
+ )
diff --git a/var/spack/repos/builtin/packages/superlu-dist/package.py b/var/spack/repos/builtin/packages/superlu-dist/package.py
index 28aff2ffdf..139bb3e79d 100644
--- a/var/spack/repos/builtin/packages/superlu-dist/package.py
+++ b/var/spack/repos/builtin/packages/superlu-dist/package.py
@@ -40,7 +40,14 @@ class SuperluDist(CMakePackage, CudaPackage, ROCmPackage):
version('5.0.0', sha256='78d1d6460ff16b3f71e4bcd7306397574d54d421249553ccc26567f00a10bfc6')
variant('int64', default=False, description='Build with 64 bit integers')
- variant('openmp', default=False, description='Build with OpenMP support (needs a good multithreaded BLAS implementation for good performance)')
+ variant(
+ 'openmp',
+ default=False,
+ description=(
+ 'Build with OpenMP support '
+ '(needs a good multithreaded BLAS implementation for good performance)'
+ )
+ )
variant('shared', default=True, description='Build shared libraries')
depends_on('mpi')
diff --git a/var/spack/repos/builtin/packages/xyce/package.py b/var/spack/repos/builtin/packages/xyce/package.py
index 06a8a95256..b02e918944 100644
--- a/var/spack/repos/builtin/packages/xyce/package.py
+++ b/var/spack/repos/builtin/packages/xyce/package.py
@@ -56,7 +56,13 @@ class Xyce(CMakePackage):
depends_on('py-pip', type='run', when='+pymi')
depends_on('py-pybind11@2.6.1:', type=('build', 'link'), when='+pymi')
- depends_on('trilinos +amesos+amesos2+anasazi+aztec+basker+belos+complex+epetra+epetraext+explicit_template_instantiation+fortran+ifpack+isorropia+kokkos+nox+sacado+suite-sparse+trilinoscouplings+zoltan+stokhos+epetraextbtf+epetraextexperimental+epetraextgraphreorderings')
+ depends_on(
+ 'trilinos'
+ '+amesos+amesos2+anasazi+aztec+basker+belos+complex+epetra+epetraext'
+ '+explicit_template_instantiation+fortran+ifpack+isorropia+kokkos+nox'
+ '+sacado+suite-sparse+trilinoscouplings+zoltan+stokhos+epetraextbtf'
+ '+epetraextexperimental+epetraextgraphreorderings'
+ )
# tested versions of Trilinos for everything up to 7.4.0
depends_on('trilinos@12.12.1:13.2.0', when='@:7.4.0')
depends_on('trilinos gotype=all cxxstd=11', when='^trilinos@:12.15')