diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/py-scikit-learn/package.py | 2 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/tppred/package.py | 54 |
2 files changed, 55 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/py-scikit-learn/package.py b/var/spack/repos/builtin/packages/py-scikit-learn/package.py index 9817ff815b..0d2a9a155c 100644 --- a/var/spack/repos/builtin/packages/py-scikit-learn/package.py +++ b/var/spack/repos/builtin/packages/py-scikit-learn/package.py @@ -35,8 +35,8 @@ class PyScikitLearn(PythonPackage): version('0.15.2', 'd9822ad0238e17b382a3c756ea94fe0d') version('0.16.1', '363ddda501e3b6b61726aa40b8dbdb7e') version('0.17.1', 'a2f8b877e6d99b1ed737144f5a478dfc') + version('0.13.1', 'acba398e1d46274b8470f40d0926e6a4') depends_on('python@2.6:2.8,3.3:') - depends_on('py-setuptools', type='build') depends_on('py-numpy@1.6.1:', type=('build', 'run')) depends_on('py-scipy@0.9:', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/tppred/package.py b/var/spack/repos/builtin/packages/tppred/package.py new file mode 100644 index 0000000000..919e15c3b0 --- /dev/null +++ b/var/spack/repos/builtin/packages/tppred/package.py @@ -0,0 +1,54 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Tppred(Package): + """TPPRED is a software package for the prediction of mitochondrial + targeting peptides from protein primary sequence.""" + + homepage = "https://tppred2.biocomp.unibo.it/tppred2/default/software" + url = "http://biocomp.unibo.it/savojard/tppred2.tar.gz" + + version('2.0', 'cd848569f6a8aa51d18fbe55fe45d624') + + depends_on('python@2.7:2.999', type='run') + depends_on('py-scikit-learn@0.13.1', type='run') + depends_on('emboss') + + def url_for_version(self, version): + url = 'http://biocomp.unibo.it/savojard/tppred{0}.tar.gz' + return url.format(version.up_to(1)) + + def install(self, spec, prefix): + mkdirp(prefix.bin) + with working_dir('bin'): + install('tppred2.py', prefix.bin) + install_tree('data', prefix.data) + install_tree('example', prefix.example) + install_tree('tppred2modules', prefix.modules) + + def setup_environment(self, spack_env, run_env): + run_env.set('TPPRED_ROOT', prefix) |