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| -rw-r--r-- | var/spack/repos/builtin/packages/vbz-compression/package.py | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/vbz-compression/package.py b/var/spack/repos/builtin/packages/vbz-compression/package.py new file mode 100644 index 0000000000..787370e6c1 --- /dev/null +++ b/var/spack/repos/builtin/packages/vbz-compression/package.py @@ -0,0 +1,50 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + + +from spack.package import * + + +class VbzCompression(CMakePackage): + """ + VBZ Compression uses variable byte integer encoding to compress nanopore signal data and is built using the following libraries: + + https://github.com/lemire/streamvbyte + https://github.com/facebook/zstd + + The performance of VBZ is achieved by taking advantage of the properties of the raw signal and therefore is most effective when applied to the signal dataset. + Other datasets you may have in your Fast5 files will not be able to take advantage of the default VBZ settings for compression. + VBZ will be used as the default compression scheme in a future release of MinKNOW. + """ + + homepage = "https://nanoporetech.com" + git = "https://github.com/nanoporetech/vbz_compression.git" + + license("MPL-2.0") + + version("1.0.3", commit="02fb8f50b93921ffa3c040106e809aaf8adbe5c5", submodules=True) + version("1.0.2", commit="3f77a01c6a0a41707b7a5bcea959e734178b6ce2", submodules=True) + version("1.0.1", commit="975cbcf33640d131b5cf2d2a124eed1a702b54f7", submodules=True) + version("1.0.0", commit="2db0e3f62fa7a612dc42dc802401c26781eed068", submodules=True) + version("0.9.3", commit="9a748efcdd0754be835e1080cf7086f3451e17d1", submodules=True) + + depends_on("cmake@3.11:", type="build") + depends_on("zstd@1.3.1:") + depends_on("hdf5@1.8.16:") + + variant( + "build_type", + default="Release", + description="CMake build type", + values=("Release", "Default"), + ) + + def cmake_args(self): + args = [ + self.define("ENABLE_CONAN", False), + self.define("ENABLE_PERF_TESTING", False), + self.define("ENABLE_PYTHON", False), + ] + return args |