diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/exabayes/package.py | 57 |
1 files changed, 57 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/exabayes/package.py b/var/spack/repos/builtin/packages/exabayes/package.py new file mode 100644 index 0000000000..85148474a2 --- /dev/null +++ b/var/spack/repos/builtin/packages/exabayes/package.py @@ -0,0 +1,57 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Exabayes(AutotoolsPackage): + """ExaBayes is a software package for Bayesian tree inference. It is + particularly suitable for large-scale analyses on computer clusters.""" + + homepage = "https://sco.h-its.org/exelixis/web/software/exabayes/" + url = "https://sco.h-its.org/exelixis/resource/download/software/exabayes-1.5.tar.gz" + + version('1.5', '6a734777b8f8eff0a520306500c8c419') + + variant('mpi', default=True, description='Enable MPI parallel support') + + depends_on('mpi', when='+mpi') + + # ExaBayes manual states the program succesfully compiles with GCC, version + # 4.6 or greater, and Clang, version 3.2 or greater. The build fails when + # GCC 7.1.0 is used. + conflicts('%gcc@:4.5.4, 7.1.0:') + conflicts('%clang@:3.1') + conflicts('^intel-mpi', when='+mpi') + conflicts('^intel-parallel-studio+mpi', when='+mpi') + conflicts('^mvapich2', when='+mpi') + conflicts('^spectrum-mpi', when='+mpi') + + def configure_args(self): + args = [] + if '+mpi' in self.spec: + args.append('--enable-mpi') + else: + args.append('--disable-mpi') + return args |