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| -rw-r--r-- | var/spack/repos/builtin/packages/r-glmgampoi/package.py | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-glmgampoi/package.py b/var/spack/repos/builtin/packages/r-glmgampoi/package.py new file mode 100644 index 0000000000..13e5a507a2 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-glmgampoi/package.py @@ -0,0 +1,29 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class RGlmgampoi(RPackage): + """Fit a Gamma-Poisson Generalized Linear Model. + + Fit linear models to overdispersed count data. The package can estimate + the overdispersion and fit repeated models for matrix input. It is designed + to handle large input datasets as they typically occur in single cell + RNA-seq experiments.""" + + bioc = "glmGamPoi" + + version("1.8.0", commit="b723d61e05c1ad50a3cf6a6393ec3d97adc7edb4") + + depends_on("r-rcpp", type=("build", "run")) + depends_on("r-delayedmatrixstats", type=("build", "run")) + depends_on("r-matrixstats", type=("build", "run")) + depends_on("r-delayedarray", type=("build", "run")) + depends_on("r-hdf5array", type=("build", "run")) + depends_on("r-summarizedexperiment", type=("build", "run")) + depends_on("r-biocgenerics", type=("build", "run")) + depends_on("r-rcpparmadillo", type=("build", "run")) + depends_on("r-beachmat", type=("build", "run")) |