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-rw-r--r-- | var/spack/repos/builtin/packages/phast/package.py | 58 |
1 files changed, 58 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/phast/package.py b/var/spack/repos/builtin/packages/phast/package.py new file mode 100644 index 0000000000..2973c8720c --- /dev/null +++ b/var/spack/repos/builtin/packages/phast/package.py @@ -0,0 +1,58 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Phast(MakefilePackage): + """PHAST is a freely available software package for comparative and + evolutionary genomics.""" + + homepage = "http://compgen.cshl.edu/phast/index.php" + url = "https://github.com/CshlSiepelLab/phast/archive/v1.4.tar.gz" + + version('1.4', '2bc0412ba58ea1f08ba5e12fad43b4c7') + + # phast cannot build with clapack using external blas + depends_on('clapack~external-blas') + + build_directory = 'src' + + @property + def build_targets(self): + targets = ['CLAPACKPATH={0}'.format(self.spec['clapack'].prefix)] + return targets + + def edit(self, spec, prefix): + with working_dir(self.build_directory): + filter_file(r'\$\{PWD\}', + '$(dir $(realpath $(firstword $(MAKEFILE_LIST))))', + 'make-include.mk') + filter_file(r'\$\{PWD\}', + '$(dir $(realpath $(firstword $(MAKEFILE_LIST))))', + 'Makefile') + + def install(self, spec, prefix): + install_tree('bin', prefix.bin) + install_tree('lib', prefix.lib) |