diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/biobambam2/package.py | 20 |
1 files changed, 20 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/biobambam2/package.py b/var/spack/repos/builtin/packages/biobambam2/package.py index 79b7269384..bafad81657 100644 --- a/var/spack/repos/builtin/packages/biobambam2/package.py +++ b/var/spack/repos/builtin/packages/biobambam2/package.py @@ -21,6 +21,26 @@ class Biobambam2(AutotoolsPackage): depends_on('m4', type='build') depends_on('libmaus2') + test_src_dir = 'test' + def configure_args(self): args = ['--with-libmaus2={0}'.format(self.spec['libmaus2'].prefix)] return args + + def _fix_shortsort(self): + """Fix the testshortsort.sh file copied during installation.""" + test_dir = join_path(self.install_test_root, self.test_src_dir) + filter_file('../src/', '', join_path(test_dir, 'testshortsort.sh')) + + @run_after('install') + def cache_test_sources(self): + """Copy the test source files after the package is installed to an + install test subdirectory for use during `spack test run`.""" + self.cache_extra_test_sources(self.test_src_dir) + self._fix_shortsort() + + def test(self): + test_dir = join_path(self.install_test_root, self.test_src_dir) + self.run_test('sh', ['testshortsort.sh'], + expected='Alignments sorted by coordinate.', + work_dir=test_dir) |