diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/r-mzr/package.py | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-mzr/package.py b/var/spack/repos/builtin/packages/r-mzr/package.py new file mode 100644 index 0000000000..282962153b --- /dev/null +++ b/var/spack/repos/builtin/packages/r-mzr/package.py @@ -0,0 +1,47 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RMzr(RPackage): + """mzR provides a unified API to the common file formats and parsers + available for mass spectrometry data. It comes with a wrapper for the + ISB random access parser for mass spectrometry mzXML, mzData and mzML + files. The package contains the original code written by the ISB, and a + subset of the proteowizard library for mzML and mzIdentML. The netCDF + reading code has previously been used in XCMS.""" + + homepage = "https://www.bioconductor.org/packages/mzR/" + url = "https://git.bioconductor.org/packages/mzR" + + version('2.10.0', git='https://git.bioconductor.org/packages/mzR', commit='a6168b68e48c281e88de9647254a8db1e21df388') + + depends_on('r-biobase', type=('build', 'run')) + depends_on('r-biocgenerics', type=('build', 'run')) + depends_on('r-protgenerics', type=('build', 'run')) + depends_on('r-rcpp', type=('build', 'run')) + depends_on('r-zlibbioc', type=('build', 'run')) + depends_on('netcdf') + depends_on('r@3.4.0:3.4.9', when='@2.10.0') |