summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
-rw-r--r--var/spack/repos/builtin/packages/r-bumphunter/package.py50
1 files changed, 50 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-bumphunter/package.py b/var/spack/repos/builtin/packages/r-bumphunter/package.py
new file mode 100644
index 0000000000..6bf6c217d6
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-bumphunter/package.py
@@ -0,0 +1,50 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RBumphunter(RPackage):
+ """Tools for finding bumps in genomic data"""
+
+ homepage = "http://bioconductor.org/packages/bumphunter/"
+ url = "https://git.bioconductor.org/packages/bumphunter"
+ list_url = homepage
+
+ version('1.16.0', git='https://git.bioconductor.org/packages/bumphunter', commit='1c3ab4d1fd2d75b1586ccef12665960b3602080a')
+
+ depends_on('r-s4vectors', type=('build', 'run'))
+ depends_on('r-iranges', type=('build', 'run'))
+ depends_on('r-genomeinfodb', type=('build', 'run'))
+ depends_on('r-genomicranges', type=('build', 'run'))
+ depends_on('r-foreach', type=('build', 'run'))
+ depends_on('r-iterators', type=('build', 'run'))
+ depends_on('r-locfit', type=('build', 'run'))
+ depends_on('r-matrixstats', type=('build', 'run'))
+ depends_on('r-limma', type=('build', 'run'))
+ depends_on('r-dorng', type=('build', 'run'))
+ depends_on('r-biocgenerics', type=('build', 'run'))
+ depends_on('r-genomicfeatures', type=('build', 'run'))
+ depends_on('r-annotationdbi', type=('build', 'run'))
+ depends_on('r@3.4.0:3.4.9', when='@1.16.0')