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| -rw-r--r-- | var/spack/repos/builtin/packages/py-crispresso/package.py | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-crispresso/package.py b/var/spack/repos/builtin/packages/py-crispresso/package.py new file mode 100644 index 0000000000..78ff71f921 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-crispresso/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyCrispresso(PythonPackage): + """Software pipeline for the analysis of CRISPR-Cas9 genome editing + outcomes from deep sequencing data.""" + + homepage = "https://github.com/lucapinello/CRISPResso" + url = "https://pypi.io/packages/source/C/CRISPResso/CRISPResso-1.0.8.tar.gz" + + version('1.0.8', '2f9b52fe62cf49012a9525845f4aea45') + + depends_on('py-setuptools', type='build') + depends_on('python@2.7.0:2.7.999', type=('build', 'run')) + depends_on('py-biopython@1.6.5:', type=('build', 'run')) + depends_on('py-matplotlib@1.3.1:', type=('build', 'run')) + depends_on('py-numpy@1.9:', type=('build', 'run')) + depends_on('py-pandas@0.15:', type=('build', 'run')) + depends_on('py-seaborn@0.7.1:', type=('build', 'run')) + depends_on('emboss@6:', type=('build', 'run')) + depends_on('flash', type=('build', 'run')) + depends_on('java', type=('build', 'run')) |