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-rw-r--r--var/spack/repos/builtin/packages/r-goseq/package.py43
1 files changed, 43 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-goseq/package.py b/var/spack/repos/builtin/packages/r-goseq/package.py
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+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RGoseq(RPackage):
+ """Detects Gene Ontology and/or other user defined categories which are
+ over/under represented in RNA-seq data"""
+
+ homepage = "https://bioconductor.org/packages/release/bioc/html/goseq.html"
+ git = "https://git.bioconductor.org/packages/goseq.git"
+
+ version('1.32.0', commit='32fcbe647eea17d7d0d7a262610811502c421d36')
+
+ depends_on('r@3.5.0:3.5.9', when='@1.32.0:', type=('build', 'run'))
+ depends_on('r-biasedurn', type=('build', 'run'))
+ depends_on('r-genelendatabase@1.9.2:', type=('build', 'run'))
+ depends_on('r-mgcv', type=('build', 'run'))
+ depends_on('r-annotationdbi', type=('build', 'run'))
+ depends_on('r-go-db', type=('build', 'run'))
+ depends_on('r-biocgenerics', type=('build', 'run'))