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| -rw-r--r-- | var/spack/repos/builtin/packages/gcta/package.py | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/gcta/package.py b/var/spack/repos/builtin/packages/gcta/package.py new file mode 100644 index 0000000000..4dd47759a3 --- /dev/null +++ b/var/spack/repos/builtin/packages/gcta/package.py @@ -0,0 +1,48 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Gcta(Package): + + """GCTA (Genome-wide Complex Trait Analysis) was originally designed to + estimate the proportion of phenotypic variance explained by all genome-wide + SNPs for complex traits (the GREML method), and has subsequently extended + for many other analyses to better understand the genetic architecture of + complex traits. GCTA currently supports the following analyses.""" + + homepage = "http://cnsgenomics.com/software/gcta/#Overview" + url = "http://cnsgenomics.com/software/gcta/gcta_1.91.2beta.zip" + + version('1.91.2beta_mac', 'ce0882ad35dd9474ffe40911da369274700af1ecb9916c0a355b7bad14850234') + version('1.91.2beta', '192efb767be1c7ca9c2dac5d2c2317a97c7a9db1f801168d19ad2a51b98d9b10', preferred=True) + + conflicts('@1.91.2beta', when='platform=darwin') + conflicts('@1.91.2beta_mac', when='platform=linux') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('gcta64', join_path(prefix.bin, 'gcta64')) + set_executable(join_path(prefix.bin, 'gcta64')) |