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| -rw-r--r-- | var/spack/repos/builtin/packages/py-quast/package.py | 49 |
1 files changed, 49 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-quast/package.py b/var/spack/repos/builtin/packages/py-quast/package.py new file mode 100644 index 0000000000..e17c2f9061 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-quast/package.py @@ -0,0 +1,49 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyQuast(PythonPackage): + """Quality Assessment Tool for Genome Assemblies""" + + homepage = "http://cab.spbu.ru/software/quast" + url = "https://github.com/ablab/quast/archive/quast_4.6.1.tar.gz" + + version('4.6.3', '16d77acb2e0f6436b58d9df7b732fb76') + version('4.6.1', '37ccd34e0040c17aa6f990353a92475c') + version('4.6.0', 'c04d62c50ec4d9caa9d7388950b8d144') + + depends_on('boost@1.56.0') + depends_on('perl@5.6.0:') + depends_on('python@2.5:,3.3:') + depends_on('py-setuptools', type='build') + depends_on('py-matplotlib', type=('build', 'run')) + depends_on('java', type=('build', 'run')) + depends_on('perl-time-hires', type=('build', 'run')) + depends_on('gnuplot', type=('build', 'run')) + depends_on('mummer', type=('build', 'run')) + depends_on('bedtools2', type=('build', 'run')) + depends_on('bwa', type=('build', 'run')) + depends_on('glimmer', type=('build', 'run')) |