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| -rw-r--r-- | var/spack/repos/builtin/packages/fastqvalidator/package.py | 56 |
1 files changed, 56 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/fastqvalidator/package.py b/var/spack/repos/builtin/packages/fastqvalidator/package.py new file mode 100644 index 0000000000..425800e4ef --- /dev/null +++ b/var/spack/repos/builtin/packages/fastqvalidator/package.py @@ -0,0 +1,56 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Fastqvalidator(MakefilePackage): + """The fastQValidator validates the format of fastq files.""" + + homepage = "http://genome.sph.umich.edu/wiki/FastQValidator" + url = "https://github.com/statgen/fastQValidator/archive/v0.1.1a.tar.gz" + + version('0.1.1a', '5c5de69527020b72b64f32987409bd12') + + conflicts('%gcc@7:', when='@0.1.1a') # statgen/fastQValidator#14 + + resource( + name='libStatGen', + url='https://github.com/statgen/libStatGen/archive/v1.0.14.tar.gz', + sha256='70a504c5cc4838c6ac96cdd010644454615cc907df4e3794c999baf958fa734b', + ) + + @property + def build_targets(self): + return ['LIB_PATH_GENERAL={0}'.format( + join_path(self.stage.source_path, 'libStatGen-1.0.14'))] + + @property + def install_targets(self): + return [ + 'INSTALLDIR={0}'.format(self.prefix.bin), + 'LIB_PATH_GENERAL={0}'.format( + join_path(self.stage.source_path, 'libStatGen-1.0.14')), + 'install' + ] |