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| -rw-r--r-- | var/spack/repos/builtin/packages/sra-toolkit/package.py | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/sra-toolkit/package.py b/var/spack/repos/builtin/packages/sra-toolkit/package.py new file mode 100644 index 0000000000..b678d3e94e --- /dev/null +++ b/var/spack/repos/builtin/packages/sra-toolkit/package.py @@ -0,0 +1,45 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class SraToolkit(Package): + """The NCBI SRA Toolkit enables reading ("dumping") of sequencing files + from the SRA database and writing ("loading") files into the .sra + format.""" + + homepage = "https://trace.ncbi.nlm.nih.gov/Traces/sra" + url = "https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.8.2-1/sratoolkit.2.8.2-1-centos_linux64.tar.gz" + + version('2.8.2-1', '3a2910754aea71aba5662804efff2a68') + + def url_for_version(self, version): + url = 'https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/{0}/sratoolkit.{0}-centos_linux64.tar.gz' + return url.format(version) + + def install(self, spec, prefix): + install_tree('bin', prefix.bin) + install_tree('example', prefix.example) + install_tree('schema', prefix.schema) |