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| -rw-r--r-- | var/spack/repos/builtin/packages/phrap-crossmatch-swat/package.py | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/phrap-crossmatch-swat/package.py b/var/spack/repos/builtin/packages/phrap-crossmatch-swat/package.py new file mode 100644 index 0000000000..ec58b57cb6 --- /dev/null +++ b/var/spack/repos/builtin/packages/phrap-crossmatch-swat/package.py @@ -0,0 +1,25 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * +import os + + +class PhrapCrossmatchSwat(MakefilePackage): + """phrap is a program for assembling shotgun DNA sequence data. + cross_match is a general purpose utility for comparing any two DNA + sequence sets using a 'banded' version of swat. + swat is a program for searching one or more DNA or protein query + sequences, or a query profile, against a sequence database""" + + homepage = "http://www.phrap.org/phredphrapconsed.html" + url = "file://{0}/phrap-crossmatch-swat-1.090518.tar.gz".format(os.getcwd()) + + version('1.090518', sha256='81f50c4410e8604cdefcc34ef6dc7b037be3bb45b94c439611a5590c1cf83665') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + for b in ['phrap', 'cross_match', 'swat']: + install(b, prefix.bin) |