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| -rw-r--r-- | var/spack/repos/builtin/packages/msmc2/package.py | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/msmc2/package.py b/var/spack/repos/builtin/packages/msmc2/package.py new file mode 100644 index 0000000000..efd0bec341 --- /dev/null +++ b/var/spack/repos/builtin/packages/msmc2/package.py @@ -0,0 +1,43 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Msmc2(MakefilePackage): + """ + This program implements MSMC2, a method to infer population size history + and population separation history from whole genome sequencing data. + """ + + homepage = "https://github.com/stschiff/msmc2" + url = "https://github.com/stschiff/msmc2/archive/v2.1.1.tar.gz" + + maintainers = ['robqiao'] + + version('2.1.2', sha256='c8c2b6ed6ef1b5d6e6e15ec0d968288e5bdae2bea1f3b4ec790f599e96bb26cd') + version('2.1.1', sha256='151dd75a8b0371ff94eed9504a7a73a2924e10466de30c230c1bb3c35a1a0913') + version('2.0.2', sha256='91152b2494342148ff84a1e5c6d2f5f0d53acba12722cd68ff5807ba4e82af55') + version('2.0.1', sha256='97e859e6f08689baf29d3c61b6904cfa5a292f8ce7b3532e055ce3047d8472f4') + version('2.0.0', sha256='9de38239f6e729a0f6f492ca671e2e70541eb5db558d816e64184c06611a1c7e') + + depends_on('gsl', type=('build', 'run')) + depends_on('dmd@:2.081.0', type='build') + + def edit(self, spec, prefix): + # Set DMD compiler + filter_file('dmd', + join_path(self.spec['dmd'].prefix.linux.bin64, 'dmd'), + 'Makefile', string=True) + + gsllibdir = spec['gsl'].libs.directories[0] + + # Set GSLDIR + filter_file('GSLDIR=/usr/local/lib', + 'GSLDIR={0}'.format(gsllibdir), + 'Makefile', string=True) + + def install(self, spec, prefix): + install_tree('build/release', prefix.bin) |