diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/dssp/package.py | 32 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/hssp/package.py (renamed from var/spack/repos/builtin/packages/xssp/package.py) | 15 |
2 files changed, 42 insertions, 5 deletions
diff --git a/var/spack/repos/builtin/packages/dssp/package.py b/var/spack/repos/builtin/packages/dssp/package.py new file mode 100644 index 0000000000..626464b67c --- /dev/null +++ b/var/spack/repos/builtin/packages/dssp/package.py @@ -0,0 +1,32 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Dssp(AutotoolsPackage): + """'mkdssp' utility. (dictionary of protein secondary structure)""" + + homepage = "https://github.com/cmbi/dssp" + url = "https://github.com/cmbi/dssp/archive/3.1.4.tar.gz" + + version('3.1.4', sha256='496282b4b5defc55d111190ab9f1b615a9574a2f090e7cf5444521c747b272d4') + version('2.3.0', sha256='4c95976d86dc64949cb0807fbd58c7bee5393df0001999405863dc90f05846c6') + + depends_on('autoconf', type='build') + depends_on('automake', type='build') + depends_on('libtool', type='build') + depends_on('m4', type='build') + depends_on('boost@1.48:') + + def configure_args(self): + args = [ + "--with-boost=%s" % self.spec['boost'].prefix] + return args + + @run_after('configure') + def edit(self): + makefile = FileFilter(join_path(self.stage.source_path, 'Makefile')) + makefile.filter('.*-Werror .*', ' -Wno-error \\') diff --git a/var/spack/repos/builtin/packages/xssp/package.py b/var/spack/repos/builtin/packages/hssp/package.py index 4a8149cb1b..073cbedea6 100644 --- a/var/spack/repos/builtin/packages/xssp/package.py +++ b/var/spack/repos/builtin/packages/hssp/package.py @@ -6,12 +6,17 @@ from spack import * -class Xssp(AutotoolsPackage): - """The source code for building the mkdssp, mkhssp, hsspconv, and hsspsoap - programs is bundled in the xssp project""" +class Hssp(AutotoolsPackage): + """The source code for building the mkhssp and hsspconv programs is bundled + in the hssp project. - homepage = "https://github.com/cmbi/xssp" - url = "https://github.com/cmbi/xssp/archive/3.0.10.tar.gz" + The mkhssp executable creates stockholm files with hssp annotations in + them. The hsspconv executable converts stockholm to the original hssp + format. + """ + + homepage = "https://github.com/cmbi/hssp" + url = "https://github.com/cmbi/hssp/archive/3.0.10.tar.gz" version('3.0.10', sha256='b475d6fa62098df0e54c8dbdaa0b32de93bf5a393335f73f9b5a7e95f3090d2a') version('3.0.9', sha256='42a9a93c48d22478212dcaf6ceb3feb64443e4cb2e8cccdd402b47a595d16658') |