diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/r-kegggraph/package.py | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-kegggraph/package.py b/var/spack/repos/builtin/packages/r-kegggraph/package.py new file mode 100644 index 0000000000..98aee6069f --- /dev/null +++ b/var/spack/repos/builtin/packages/r-kegggraph/package.py @@ -0,0 +1,43 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RKegggraph(RPackage): + """KEGGGraph is an interface between KEGG pathway and graph object as + well as a collection of tools to analyze, dissect and visualize these + graphs. It parses the regularly updated KGML (KEGG XML) files into graph + models maintaining all essential pathway attributes. The package offers + functionalities including parsing, graph operation, visualization and + etc.""" + + homepage = "https://www.bioconductor.org/packages/KEGGgraph/" + url = "https://git.bioconductor.org/packages/KEGGgraph" + + version('1.38.1', git='https://git.bioconductor.org/packages/KEGGgraph', commit='dd31665beb36d5aad8ed09ed56c603633b6b2292') + + depends_on('r-graph', type=('build', 'run')) + depends_on('r-xml', type=('build', 'run')) + depends_on('r@3.4.0:3.4.9', when='@1.38.1') |