diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/fastx-toolkit/fix_pragma_pack.patch | 19 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/fastx-toolkit/package.py | 2 |
2 files changed, 21 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/fastx-toolkit/fix_pragma_pack.patch b/var/spack/repos/builtin/packages/fastx-toolkit/fix_pragma_pack.patch new file mode 100644 index 0000000000..5f4d178d03 --- /dev/null +++ b/var/spack/repos/builtin/packages/fastx-toolkit/fix_pragma_pack.patch @@ -0,0 +1,19 @@ +--- spack-src/src/libfastx/fastx.h.org 2019-12-19 12:05:37.497936486 +0900 ++++ spack-src/src/libfastx/fastx.h 2019-12-19 13:44:55.481837853 +0900 +@@ -58,7 +58,7 @@ + OUTPUT_SAME_AS_INPUT=3 + } OUTPUT_FILE_TYPE; + +-#pragma pack(1) ++#pragma pack(push, 1) + typedef struct + { + /* Record data - common for FASTA/FASTQ */ +@@ -115,6 +115,7 @@ + FILE* input; + FILE* output; + } FASTX ; ++#pragma pack(pop) + + + void fastx_init_reader(FASTX *pFASTX, const char* filename, diff --git a/var/spack/repos/builtin/packages/fastx-toolkit/package.py b/var/spack/repos/builtin/packages/fastx-toolkit/package.py index 48633acbc6..8ad93ddad5 100644 --- a/var/spack/repos/builtin/packages/fastx-toolkit/package.py +++ b/var/spack/repos/builtin/packages/fastx-toolkit/package.py @@ -19,3 +19,5 @@ class FastxToolkit(AutotoolsPackage): # patch implicit fallthrough patch("pr-22.patch") + # fix error [-Werror,-Wpragma-pack] + patch('fix_pragma_pack.patch', when='%fj') |