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| -rw-r--r-- | var/spack/repos/builtin/packages/figtree/package.py | 58 |
1 files changed, 58 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/figtree/package.py b/var/spack/repos/builtin/packages/figtree/package.py new file mode 100644 index 0000000000..2bb63f3368 --- /dev/null +++ b/var/spack/repos/builtin/packages/figtree/package.py @@ -0,0 +1,58 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## + +from spack import * +import os + + +class Figtree(Package): + """FigTree is designed as a graphical viewer of phylogenetic trees and + as a program for producing publication-ready figures. As with most of + my programs, it was written for my own needs so may not be as polished + and feature-complete as a commercial program. In particular it is + designed to display summarized and annotated trees produced by BEAST.""" + + homepage = "https://github.com/rambaut/figtree" + url = "https://github.com/rambaut/figtree/releases/download/v1.4.3/FigTree_v1.4.3.tgz" + + version('1.4.3', sha256='f497d4dd3a6d220f6b62495b6f47a12ade50d87dbd8d6089f168e94d202f937b') + + depends_on('java', type='run') + + def patch(self): + # we have to change up the executable to point to the right program + filter_file('lib/figtree.jar', + join_path(self.spec.prefix.lib, 'figtree.jar'), + 'bin/figtree', string=True) + + # also set proper executable flags + os.chmod('bin/figtree', 0o775) + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install_tree('bin', prefix.bin) + + mkdirp(prefix.lib) + install_tree('lib', prefix.lib) |