diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/repeatmasker/package.py | 14 |
1 files changed, 13 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/repeatmasker/package.py b/var/spack/repos/builtin/packages/repeatmasker/package.py index 746162e8e4..f91f71aaba 100644 --- a/var/spack/repos/builtin/packages/repeatmasker/package.py +++ b/var/spack/repos/builtin/packages/repeatmasker/package.py @@ -16,12 +16,18 @@ class Repeatmasker(Package): version('4.0.7', '4dcbd7c88c5343e02d819f4b3e6527c6') + variant('crossmatch', description='Enable CrossMatch search engine', + default=False) + depends_on('perl', type=('build', 'run')) depends_on('perl-text-soundex', type=('build', 'run')) depends_on('hmmer') depends_on('ncbi-rmblastn') depends_on('trf') + depends_on('phrap-crossmatch-swat', type=('build', 'run'), + when='+crossmatch') + def url_for_version(self, version): url = 'http://www.repeatmasker.org/RepeatMasker-open-{0}.tar.gz' return url.format(version.dashed) @@ -48,7 +54,13 @@ class Repeatmasker(Package): '%s\n' % self.stage.source_path, '%s\n' % self.spec['trf'].prefix.bin.trf, '2\n', '%s\n' % self.spec['ncbi-rmblastn'].prefix.bin, - 'Y\n', '5\n'] + 'Y\n'] + + if '+crossmatch' in spec: + crossmatch = self.spec['phrap-crossmatch-swat'].prefix.bin + config_answers.extend(['1\n', '%s\n' % crossmatch, 'N\n']) + + config_answers.append('5\n') config_answers_filename = 'spack-config.in' |