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| -rw-r--r-- | var/spack/repos/builtin/packages/py-dp-gp-cluster/package.py | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-dp-gp-cluster/package.py b/var/spack/repos/builtin/packages/py-dp-gp-cluster/package.py new file mode 100644 index 0000000000..42e56516d1 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-dp-gp-cluster/package.py @@ -0,0 +1,33 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * +from os import unlink +from glob import glob + + +class PyDpGpCluster(PythonPackage): + """DP_GP_cluster clusters genes by expression over a time course using a + Dirichlet process Gaussian process model.""" + + homepage = "https://github.com/PrincetonUniversity/DP_GP_cluster" + git = "https://github.com/PrincetonUniversity/DP_GP_cluster.git" + + version('2019-09-22', commit='eec12e74219f916aa86e253783905f7b5e30f6f4') + + depends_on('python@2.7:2.8', type=('build', 'run')) + + depends_on('py-cython', type='build') + depends_on('py-gpy@0.8.8:0.9.9', type=('build', 'run')) + depends_on('py-pandas', type=('build', 'run')) + depends_on('py-numpy', type=('build', 'run')) + depends_on('py-scipy@0.14:', type=('build', 'run')) + depends_on('py-matplotlib', type=('build', 'run')) + depends_on('py-scikit-learn', type=('build', 'run')) + + @run_before('build') + def remove_cython_output(self): + for f in glob('DP_GP/*.c'): + unlink(f) |