diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/find-circ/package.py | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/find-circ/package.py b/var/spack/repos/builtin/packages/find-circ/package.py new file mode 100644 index 0000000000..18f6cfb4e4 --- /dev/null +++ b/var/spack/repos/builtin/packages/find-circ/package.py @@ -0,0 +1,34 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class FindCirc(Package): + """Find-circ is a collection of python scripts + detecting head-to-tail spliced (back-spliced) sequencing reads, + indicative of circular RNA (circRNA) in RNA-seq data.""" + + homepage = "https://github.com/marvin-jens/find_circ" + url = "https://github.com/marvin-jens/find_circ/archive/v1.2.tar.gz" + + version('1.2', sha256='f88bf9b5d0cc818313074982d4460c96706f555d924e2821832c3d03bf67743e') + + depends_on('python@2.7:2.8', type=('build', 'run')) + depends_on('py-pysam', type=('build', 'run')) + # Higher version of py-pandas and py-numpy + # depends on python@3: which conflicts with py-rnacocktail + depends_on('py-numpy@:1.16.5', type=('build', 'run')) + + def install(self, spec, prefix): + mkdir(prefix.bin) + install('cmp_bed.py', prefix.bin) + install('find_circ.py', prefix.bin) + install('maxlength.py', prefix.bin) + install('unmapped2anchors.py', prefix.bin) + install('README.md', prefix) + install('README.pdf', prefix) + install('LICENSE', prefix) + install_tree('test_data', prefix.test_data) |