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| -rw-r--r-- | var/spack/repos/builtin/packages/py-mixedhtseq/package.py | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-mixedhtseq/package.py b/var/spack/repos/builtin/packages/py-mixedhtseq/package.py new file mode 100644 index 0000000000..c01348a099 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-mixedhtseq/package.py @@ -0,0 +1,39 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * +import glob + + +class PyMixedhtseq(PythonPackage): + """HTSeq for mixed single and paired end reads""" + + homepage = "https://github.com/schae234/MixedHTSeq" + url = "https://github.com/schae234/MixedHTSeq/archive/v0.1.0.tar.gz" + + version('0.1.0', sha256='234689c8743ae2ba7ad13bc1809a5248184a4b8d16112d5413e09164ab67e157') + + depends_on('python@2.5:2.8', type=('build', 'run')) + depends_on('py-numpy', type=('build', 'run')) + depends_on('py-htseq', type=('build', 'run')) + depends_on('py-ipython', type=('build', 'run')) + depends_on('py-pandas', type=('build', 'run')) + + depends_on('py-setuptools', type='build') + + @run_after('install') + def install_scripts(self): + shebang = '#!{0}\n'.format(self.spec['python'].command) + + for fname in glob.glob('scripts/*.py'): + filter_file('^#!.*', '', fname) + with open(fname, 'r') as orig: + fdata = orig.read() + with open(fname, 'w') as new: + new.write(shebang + fdata) + set_executable(fname) + + mkdirp(self.prefix.bin) + install_tree('scripts', self.prefix.bin) |