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| -rw-r--r-- | var/spack/repos/builtin/packages/r-keggrest/package.py | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-keggrest/package.py b/var/spack/repos/builtin/packages/r-keggrest/package.py new file mode 100644 index 0000000000..bd60856abc --- /dev/null +++ b/var/spack/repos/builtin/packages/r-keggrest/package.py @@ -0,0 +1,44 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RKeggrest(RPackage): + """This package provides functions and routines useful in the analysis + of somatic signatures (cf. L. Alexandrov et al., Nature 2013). In + particular, functions to perform a signature analysis with known + signatures (LCD = linear combination decomposition) and a signature + analysis on stratified mutational catalogue (SMC = stratify mutational + catalogue) are provided.""" + + homepage = "http://bioconductor.org/packages/KEGGREST" + url = "https://git.bioconductor.org/packages/KEGGREST" + list_url = homepage + + version('1.2.0', git='https://git.bioconductor.org/packages/KEGGREST', commit='ed48de0def57a909894e237fa4731c4a052d8849') + + depends_on('r-httr', type=('build', 'run')) + depends_on('r-png', type=('build', 'run')) + depends_on('r-biostrings', type=('build', 'run')) |