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| -rw-r--r-- | var/spack/repos/builtin/packages/r-biovizbase/package.py | 58 |
1 files changed, 58 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-biovizbase/package.py b/var/spack/repos/builtin/packages/r-biovizbase/package.py new file mode 100644 index 0000000000..4031e5bfa5 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-biovizbase/package.py @@ -0,0 +1,58 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RBiovizbase(RPackage): + """The biovizBase package is designed to provide a set of + utilities, color schemes and conventions for genomic data. + It serves as the base for various high-level packages for + biological data visualization. This saves development effort + and encourages consistency.""" + + homepage = "http://bioconductor.org/packages/biovizBase/" + url = "https://git.bioconductor.org/packages/biovizBase" + + version('1.24.0', git='https://git.bioconductor.org/packages/biovizBase', commit='ae9cd2ff665b74a8f45ed9c1d17fc0a778b4af6c') + + depends_on('r@3.4.0:3.4.9', when='@1.24.0') + depends_on('r-scales', type=('build', 'run')) + depends_on('r-hmisc', type=('build', 'run')) + depends_on('r-rcolorbrewer', type=('build', 'run')) + depends_on('r-dichromat', type=('build', 'run')) + depends_on('r-biocgenerics', type=('build', 'run')) + depends_on('r-s4vectors', type=('build', 'run')) + depends_on('r-iranges', type=('build', 'run')) + depends_on('r-genomeinfodb', type=('build', 'run')) + depends_on('r-genomicranges', type=('build', 'run')) + depends_on('r-summarizedexperiment', type=('build', 'run')) + depends_on('r-biostrings', type=('build', 'run')) + depends_on('r-rsamtools', type=('build', 'run')) + depends_on('r-genomicalignments', type=('build', 'run')) + depends_on('r-genomicfeatures', type=('build', 'run')) + depends_on('r-annotationdbi', type=('build', 'run')) + depends_on('r-variantannotation', type=('build', 'run')) + depends_on('r-ensembldb', type=('build', 'run')) + depends_on('r-annotationfilter', type=('build', 'run')) |