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-rw-r--r--var/spack/repos/builtin/packages/signalp/package.py61
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diff --git a/var/spack/repos/builtin/packages/signalp/package.py b/var/spack/repos/builtin/packages/signalp/package.py
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+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+import os
+
+
+class Signalp(Package):
+ """SignalP predicts the presence and location of signal peptide cleavage
+ sites in amino acid sequences from different organisms: Gram-positive
+ bacteria, Gram-negative bacteria, and eukaryotes.
+ Note: A manual download is required for SignalP.
+ Spack will search your current directory for the download file.
+ Alternatively, add this file to a mirror so that Spack can find it.
+ For instructions on how to set up a mirror, see
+ http://spack.readthedocs.io/en/latest/mirrors.html"""
+
+ homepage = "http://www.cbs.dtu.dk/services/SignalP/"
+ url = "file://{0}/signalp-4.1f.Linux.tar.gz".format(os.getcwd())
+
+ version('4.1f', 'a9aeb66259202649c959846f3f4d9744')
+
+ depends_on('perl', type=('build', 'run'))
+ depends_on('gnuplot')
+
+ def patch(self):
+ edit = FileFilter('signalp')
+ edit.filter("ENV{SIGNALP} = .*",
+ "ENV{SIGNALP} = '%s'" % self.prefix)
+
+ def install(self, spec, prefix):
+ mkdirp(prefix.share.man)
+ install('signalp', prefix)
+ install('signalp.1', prefix.share.man)
+ install_tree('bin', prefix.bin)
+ install_tree('lib', prefix.lib)
+ install_tree('syn', prefix.syn)
+
+ def setup_environment(self, spack_env, run_env):
+ run_env.prepend_path('PATH', prefix)