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| -rw-r--r-- | var/spack/repos/builtin/packages/biobambam2/package.py | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/biobambam2/package.py b/var/spack/repos/builtin/packages/biobambam2/package.py new file mode 100644 index 0000000000..615e88a713 --- /dev/null +++ b/var/spack/repos/builtin/packages/biobambam2/package.py @@ -0,0 +1,26 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Biobambam2(AutotoolsPackage): + """Tools for early stage alignment file processing""" + + homepage = "https://gitlab.com/german.tischler/biobambam2" + url = "https://gitlab.com/german.tischler/biobambam2/-/archive/2.0.177-release-20201112105453/biobambam2-2.0.177-release-20201112105453.tar.gz" + + version('2.0.177', sha256='ad0a418fb49a31996a105a1a275c0d1dfc8b84aa91d48fa1efb6ff4fe1e74181', + url='https://gitlab.com/german.tischler/biobambam2/-/archive/2.0.177-release-20201112105453/biobambam2-2.0.177-release-20201112105453.tar.gz') + + depends_on('autoconf', type='build') + depends_on('automake', type='build') + depends_on('libtool', type='build') + depends_on('m4', type='build') + depends_on('libmaus2') + + def configure_args(self): + args = ['--with-libmaus2={0}'.format(self.spec['libmaus2'].prefix)] + return args |