diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/bowtie/fix_narrowing_err_1.3.0.patch | 6 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/bowtie/package.py | 4 |
2 files changed, 5 insertions, 5 deletions
diff --git a/var/spack/repos/builtin/packages/bowtie/fix_narrowing_err_1.3.0.patch b/var/spack/repos/builtin/packages/bowtie/fix_narrowing_err_1.3.0.patch index 0da7fe0de3..898a87bdc5 100644 --- a/var/spack/repos/builtin/packages/bowtie/fix_narrowing_err_1.3.0.patch +++ b/var/spack/repos/builtin/packages/bowtie/fix_narrowing_err_1.3.0.patch @@ -1,11 +1,11 @@ ---- a/alphabet.cpp 2020-07-28 15:02:56.137635525 -0400 -+++ b/alphabet.cpp 2020-07-28 15:05:32.385589360 -0400 +--- spack-src/alphabet.cpp.bak 2020-07-23 11:52:57.000000000 +0900 ++++ spack-src/alphabet.cpp 2020-09-16 17:05:52.093190703 +0900 @@ -274,7 +274,7 @@ const char *iupacs = "!ACMGRSVTWYHKDBN!acmgrsvtwyhkdbn"; signed char mask2iupac[16] = { - -1, -+ static_cast<char>(-1), ++ static_cast<signed char>(-1), 'A', // 0001 'C', // 0010 'M', // 0011 diff --git a/var/spack/repos/builtin/packages/bowtie/package.py b/var/spack/repos/builtin/packages/bowtie/package.py index 737ae8c893..e473925796 100644 --- a/var/spack/repos/builtin/packages/bowtie/package.py +++ b/var/spack/repos/builtin/packages/bowtie/package.py @@ -48,10 +48,10 @@ class Bowtie(MakefilePackage): # correspond to 'aarch64' architecture # reference: https://github.com/BenLangmead/bowtie/pull/13 - patch('for_aarch64.patch', when='target=aarch64:') + patch('for_aarch64.patch', when='@1.2:1.2.999 target=aarch64:') # measures for narrowing error - patch('fix_narrowing_err.patch', when='@:1.2.3') + patch('fix_narrowing_err.patch', when='@1.2.1:1.2.3') patch('fix_narrowing_err_1.3.0.patch', when='@1.3.0:') def edit(self, spec, prefix): |