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-rw-r--r--var/spack/repos/builtin/packages/sortmerna/package.py44
1 files changed, 44 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/sortmerna/package.py b/var/spack/repos/builtin/packages/sortmerna/package.py
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+++ b/var/spack/repos/builtin/packages/sortmerna/package.py
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+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Sortmerna(CMakePackage):
+ """SortMeRNA is a program tool for filtering, mapping and OTU-picking NGS
+ reads in metatranscriptomic and metagenomic data"""
+
+ homepage = "https://github.com/biocore/sortmerna"
+ url = "https://github.com/biocore/sortmerna"
+
+ version('2017-07-13', git='https://github.com/biocore/sortmerna.git', commit='8bde6fa113a5d99a23ae81b48eeea6760e966094')
+
+ depends_on('zlib')
+
+ def install(self, spec, prefix):
+ mkdirp(prefix.bin)
+ with working_dir(join_path('spack-build', 'src', 'indexdb')):
+ install('indexdb', prefix.bin)
+ with working_dir(join_path('spack-build', 'src', 'sortmerna')):
+ install('sortmerna', prefix.bin)