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| -rw-r--r-- | var/spack/repos/builtin/packages/r-quantro/package.py | 49 |
1 files changed, 49 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-quantro/package.py b/var/spack/repos/builtin/packages/r-quantro/package.py new file mode 100644 index 0000000000..1edadf8f49 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-quantro/package.py @@ -0,0 +1,49 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RQuantro(RPackage): + """A data-driven test for the assumptions of quantile normalization using + raw data such as objects that inherit eSets (e.g. ExpressionSet, + MethylSet). Group level information about each sample (such as + Tumor / Normal status) must also be provided because the test assesses + if there are global differences in the distributions between the + user-defined groups.""" + + homepage = "https://www.bioconductor.org/packages/quantro/" + url = "https://git.bioconductor.org/packages/quantro" + list_url = homepage + + version('1.10.0', git='https://git.bioconductor.org/packages/quantro', commit='111337c0aba052aa49c3d2e2d3042794b28858c9') + + depends_on('r-biobase', type=('build', 'run')) + depends_on('r-minfi', type=('build', 'run')) + depends_on('r-doparallel', type=('build', 'run')) + depends_on('r-foreach', type=('build', 'run')) + depends_on('r-iterators', type=('build', 'run')) + depends_on('r-ggplot2', type=('build', 'run')) + depends_on('r-rcolorbrewer', type=('build', 'run')) + depends_on('r@3.4.0:3.4.9', when='@1.10.0') |