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| -rw-r--r-- | var/spack/repos/builtin/packages/r-ptw/package.py | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-ptw/package.py b/var/spack/repos/builtin/packages/r-ptw/package.py new file mode 100644 index 0000000000..eb1f575ecf --- /dev/null +++ b/var/spack/repos/builtin/packages/r-ptw/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RPtw(RPackage): + """Parametric Time Warping aligns patterns, i.e. it aims to put + corresponding features at the same locations. The algorithm + searches for an optimal polynomial describing the warping. It is + possible to align one sample to a reference, several samples to + the same reference, or several samples to several references. + One can choose between calculating individual warpings, or one + global warping for a set of samples and one reference. Two + optimization criteria are implemented: RMS (Root Mean Square + error) and WCC (Weighted Cross Correlation). Both warping of + peak profiles and of peak lists are supported.""" + + homepage = "https://cran.r-project.org/package=ptw" + url = "https://cran.rstudio.com/src/contrib/ptw_1.9-12.tar.gz" + list_url = "https://cran.rstudio.com/src/contrib/Archive/ptw" + + version('1.9-12', 'ddff887752d789ea72db3ee235ae7c67') + + depends_on('r-nloptr', type=('build', 'run')) |