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| -rw-r--r-- | var/spack/repos/builtin/packages/r-dada2/package.py | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-dada2/package.py b/var/spack/repos/builtin/packages/r-dada2/package.py new file mode 100644 index 0000000000..41354055fe --- /dev/null +++ b/var/spack/repos/builtin/packages/r-dada2/package.py @@ -0,0 +1,29 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RDada2(RPackage): + """Accurate sample inference from amplicon data with single nucleotide + resolution""" + + homepage = "http://benjjneb.github.io/dada2/" + url = "https://github.com/benjjneb/dada2/archive/v1.14.tar.gz" + + version('1.14', sha256='19980b9d7b0a0e80e86010357cae11d1fc07c2d02067c4445169143cf1f99906') + + depends_on('r@3.4:', type=('build', 'run')) + depends_on('r-rcpp@0.12.0:', type=('build', 'run')) + depends_on('r-biostrings@2.42.1:', type=('build', 'run')) + depends_on('r-ggplot2@2.1.0:', type=('build', 'run')) + depends_on('r-reshape2@1.4.1:', type=('build', 'run')) + depends_on('r-shortread@1.32.0:', type=('build', 'run')) + depends_on('r-rcppparallel@4.3.0:', type=('build', 'run')) + depends_on('r-iranges@2.6.0:', type=('build', 'run')) + depends_on('r-xvector@0.16.0:', type=('build', 'run')) + depends_on('r-biocgenerics@0.22.0:', type=('build', 'run')) + + depends_on('gmake', type='build') |