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| -rw-r--r-- | var/spack/repos/builtin/packages/py-misopy/package.py | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-misopy/package.py b/var/spack/repos/builtin/packages/py-misopy/package.py new file mode 100644 index 0000000000..3bfba1cc30 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-misopy/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyMisopy(PythonPackage): + """MISO (Mixture of Isoforms) is a probabilistic framework that + quantitates the expression level of alternatively spliced genes from + RNA-Seq data, and identifies differentially regulated isoforms or exons + across samples.""" + + homepage = "http://miso.readthedocs.io/en/fastmiso/" + url = "https://pypi.io/packages/source/m/misopy/misopy-0.5.4.tar.gz" + + version('0.5.4', 'fe0c9c2613304defbdead12ea99e4194') + + depends_on('py-setuptools', type='build') + depends_on('python@2.6:', type=('build', 'run')) + depends_on('py-numpy@1.5.0:', type=('build', 'run')) + depends_on('py-scipy@0.9.0:', type=('build', 'run')) + depends_on('py-pysam@0.6.0:', type=('build', 'run')) + depends_on('py-matplotlib', type=('build', 'run')) + depends_on('samtools') + depends_on('bedtools2') |