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| -rw-r--r-- | var/spack/repos/builtin/packages/py-pathml/package.py | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-pathml/package.py b/var/spack/repos/builtin/packages/py-pathml/package.py new file mode 100644 index 0000000000..9e1fa11a5f --- /dev/null +++ b/var/spack/repos/builtin/packages/py-pathml/package.py @@ -0,0 +1,34 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class PyPathml(PythonPackage): + """An open-source toolkit for computational pathology and machine learning.""" + + homepage = "https://github.com/Dana-Farber-AIOS/pathml" + pypi = "pathml/pathml-2.1.0.tar.gz" + + version("2.1.0", sha256="462bb2f16452dddad310c30f62678a1336ce492263355fd6722c07ee4840ea6a") + + depends_on("py-setuptools@42:", type="build") + depends_on("py-numpy@1.16.4:", type=("build", "run")) + depends_on("py-pandas", type=("build", "run")) + depends_on("py-scipy", type=("build", "run")) + depends_on("py-pydicom", type=("build", "run")) + depends_on("py-statsmodels", type=("build", "run")) + depends_on("py-openslide-python", type=("build", "run")) + depends_on("py-matplotlib", type=("build", "run")) + depends_on("py-scikit-image", type=("build", "run")) + depends_on("py-scikit-learn", type=("build", "run")) + depends_on("py-dask +distributed", type=("build", "run")) + depends_on("py-anndata@0.7.6:", type=("build", "run")) + depends_on("py-scanpy", type=("build", "run")) + depends_on("py-torch", type=("build", "run")) + depends_on("opencv+python3", type=("build", "run")) + depends_on("py-python-bioformats@4.0.0:", type=("build", "run")) + depends_on("py-loguru", type=("build", "run")) + depends_on("py-h5py", type=("build", "run")) |