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-rw-r--r--var/spack/repos/builtin/packages/alps/package.py2
-rw-r--r--var/spack/repos/builtin/packages/ambari/package.py8
-rw-r--r--var/spack/repos/builtin/packages/aomp/package.py6
-rw-r--r--var/spack/repos/builtin/packages/asciidoc/package.py2
-rw-r--r--var/spack/repos/builtin/packages/blasr-libcpp/package.py2
-rw-r--r--var/spack/repos/builtin/packages/blitz/package.py4
-rw-r--r--var/spack/repos/builtin/packages/cbtf-krell/package.py6
-rw-r--r--var/spack/repos/builtin/packages/chill/package.py4
-rw-r--r--var/spack/repos/builtin/packages/citcoms/package.py1
-rw-r--r--var/spack/repos/builtin/packages/easybuild/package.py2
-rw-r--r--var/spack/repos/builtin/packages/elpa/package.py26
-rw-r--r--var/spack/repos/builtin/packages/find-circ/package.py2
-rw-r--r--var/spack/repos/builtin/packages/ganglia/package.py2
-rw-r--r--var/spack/repos/builtin/packages/gaudi/package.py4
-rw-r--r--var/spack/repos/builtin/packages/genesis/package.py2
-rw-r--r--var/spack/repos/builtin/packages/gpdb/package.py12
-rw-r--r--var/spack/repos/builtin/packages/gplates/package.py4
-rw-r--r--var/spack/repos/builtin/packages/grass/package.py12
-rw-r--r--var/spack/repos/builtin/packages/julia/package.py20
-rw-r--r--var/spack/repos/builtin/packages/libproxy/package.py6
-rw-r--r--var/spack/repos/builtin/packages/libxcb/package.py6
-rw-r--r--var/spack/repos/builtin/packages/llvm/package.py20
-rw-r--r--var/spack/repos/builtin/packages/madgraph5amc/package.py2
-rw-r--r--var/spack/repos/builtin/packages/magics/package.py16
-rw-r--r--var/spack/repos/builtin/packages/manta/package.py12
-rw-r--r--var/spack/repos/builtin/packages/miniconda2/package.py14
-rw-r--r--var/spack/repos/builtin/packages/mozjs/package.py6
-rw-r--r--var/spack/repos/builtin/packages/mpip/package.py2
-rw-r--r--var/spack/repos/builtin/packages/node-js/package.py14
-rw-r--r--var/spack/repos/builtin/packages/nwchem/package.py2
-rw-r--r--var/spack/repos/builtin/packages/ont-albacore/package.py2
-rw-r--r--var/spack/repos/builtin/packages/openpbs/package.py2
-rw-r--r--var/spack/repos/builtin/packages/openspeedshop-utils/package.py8
-rw-r--r--var/spack/repos/builtin/packages/openspeedshop/package.py8
-rw-r--r--var/spack/repos/builtin/packages/partitionfinder/package.py2
-rw-r--r--var/spack/repos/builtin/packages/petsc/package.py54
-rw-r--r--var/spack/repos/builtin/packages/py-anuga/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-azureml-dataprep-native/package.py8
-rw-r--r--var/spack/repos/builtin/packages/py-azureml-dataprep-rslex/package.py16
-rw-r--r--var/spack/repos/builtin/packages/py-backports-functools-lru-cache/package.py6
-rw-r--r--var/spack/repos/builtin/packages/py-backports-shutil-get-terminal-size/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-bx-python/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-cdat-lite/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-checkm-genome/package.py4
-rw-r--r--var/spack/repos/builtin/packages/py-cheetah/package.py4
-rw-r--r--var/spack/repos/builtin/packages/py-cogent/package.py4
-rw-r--r--var/spack/repos/builtin/packages/py-crispresso/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-crossmap/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-cython/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-dataclasses/package.py4
-rw-r--r--var/spack/repos/builtin/packages/py-docutils/package.py5
-rw-r--r--var/spack/repos/builtin/packages/py-doxypy/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-dp-gp-cluster/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-easybuild-easyblocks/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-easybuild-easyconfigs/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-easybuild-framework/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-enum34/package.py4
-rw-r--r--var/spack/repos/builtin/packages/py-flye/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-futures/package.py4
-rw-r--r--var/spack/repos/builtin/packages/py-gemini/package.py20
-rw-r--r--var/spack/repos/builtin/packages/py-gosam/package.py4
-rw-r--r--var/spack/repos/builtin/packages/py-gsi/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-importlib/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-iniparse/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-irpf90/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-itk/package.py12
-rw-r--r--var/spack/repos/builtin/packages/py-macs2/package.py6
-rw-r--r--var/spack/repos/builtin/packages/py-markdown/package.py24
-rw-r--r--var/spack/repos/builtin/packages/py-methylcode/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-mixedhtseq/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-numba/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-opentuner/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-opt-einsum/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-picrust/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-pil/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-pillow/package.py6
-rw-r--r--var/spack/repos/builtin/packages/py-pipits/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-pygdbmi/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-pygobject/package.py4
-rw-r--r--var/spack/repos/builtin/packages/py-pygtk/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-pylint/package.py8
-rw-r--r--var/spack/repos/builtin/packages/py-pyrad/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-pysqlite/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-python-meep/package.py3
-rw-r--r--var/spack/repos/builtin/packages/py-restview/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-resultsfile/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-rnacocktail/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-rseqc/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-statsmodels/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-storm/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-tap-py/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-typing/package.py10
-rw-r--r--var/spack/repos/builtin/packages/py-vcf-kit/package.py2
-rw-r--r--var/spack/repos/builtin/packages/py-weave/package.py2
-rw-r--r--var/spack/repos/builtin/packages/python/package.py86
-rw-r--r--var/spack/repos/builtin/packages/qbox/package.py46
-rw-r--r--var/spack/repos/builtin/packages/qgis/package.py1
-rw-r--r--var/spack/repos/builtin/packages/roctracer-dev/package.py14
-rw-r--r--var/spack/repos/builtin/packages/rust/package.py66
-rw-r--r--var/spack/repos/builtin/packages/scons/package.py4
-rw-r--r--var/spack/repos/builtin/packages/shiny-server/package.py2
-rw-r--r--var/spack/repos/builtin/packages/slepc/package.py26
-rw-r--r--var/spack/repos/builtin/packages/slider/package.py6
-rw-r--r--var/spack/repos/builtin/packages/stat/package.py2
-rw-r--r--var/spack/repos/builtin/packages/strelka/package.py28
-rw-r--r--var/spack/repos/builtin/packages/tppred/package.py2
-rw-r--r--var/spack/repos/builtin/packages/tut/package.py2
-rw-r--r--var/spack/repos/builtin/packages/vapor/package.py4
-rw-r--r--var/spack/repos/builtin/packages/verrou/package.py4
109 files changed, 409 insertions, 413 deletions
diff --git a/var/spack/repos/builtin/packages/alps/package.py b/var/spack/repos/builtin/packages/alps/package.py
index f696d27d9a..d534db50de 100644
--- a/var/spack/repos/builtin/packages/alps/package.py
+++ b/var/spack/repos/builtin/packages/alps/package.py
@@ -15,7 +15,7 @@ class Alps(CMakePackage):
homepage = "https://alps.comp-phys.org"
url = "https://alps.comp-phys.org/static/software/releases/alps-2.3.0-src.tar.gz"
- version('2.3.0', sha256='e64208d1e5acdd6f569277413c4867e1fa366cf4a224570eacbf1e9939fca2d2')
+ version('2.3.0', sha256='e64208d1e5acdd6f569277413c4867e1fa366cf4a224570eacbf1e9939fca2d2', deprecated=True)
# Refs for building from source and recipes
# https://alps.comp-phys.org/mediawiki/index.php/Building_ALPS_from_source
diff --git a/var/spack/repos/builtin/packages/ambari/package.py b/var/spack/repos/builtin/packages/ambari/package.py
index 6ef3f2449d..e1d7b609e8 100644
--- a/var/spack/repos/builtin/packages/ambari/package.py
+++ b/var/spack/repos/builtin/packages/ambari/package.py
@@ -14,10 +14,10 @@ class Ambari(PythonPackage):
homepage = "https://cwiki.apache.org/confluence/display/AMBARI/Ambari"
url = "https://github.com/apache/ambari/archive/release-2.7.5.tar.gz"
- version('2.7.5', sha256='f8c8687b7a61b633b92f83b1c104fd75b1e13836cd8a0e0df6db7b483b23a354')
- version('2.7.4', sha256='d6796c7ea913d39c93dad52b4cb74ef411a7dce4ebf68f11b12718117f2c01a4')
- version('2.7.3', sha256='30fe72e60fa6b62fe032bd193ebd0cef20b65c54b57cad92f6f44daabd3771cf')
- version('2.7.1', sha256='ea4eb28f377ce9d0b9b7648f2020dda4be974c6d9a22ebaafbf1bc97890e4e42')
+ version('2.7.5', sha256='f8c8687b7a61b633b92f83b1c104fd75b1e13836cd8a0e0df6db7b483b23a354', deprecated=True)
+ version('2.7.4', sha256='d6796c7ea913d39c93dad52b4cb74ef411a7dce4ebf68f11b12718117f2c01a4', deprecated=True)
+ version('2.7.3', sha256='30fe72e60fa6b62fe032bd193ebd0cef20b65c54b57cad92f6f44daabd3771cf', deprecated=True)
+ version('2.7.1', sha256='ea4eb28f377ce9d0b9b7648f2020dda4be974c6d9a22ebaafbf1bc97890e4e42', deprecated=True)
depends_on('python@:2.7', type=('build', 'run'))
depends_on('py-setuptools@:44', type='build')
diff --git a/var/spack/repos/builtin/packages/aomp/package.py b/var/spack/repos/builtin/packages/aomp/package.py
index d13ec091f2..85c9a4d8a3 100644
--- a/var/spack/repos/builtin/packages/aomp/package.py
+++ b/var/spack/repos/builtin/packages/aomp/package.py
@@ -97,9 +97,9 @@ class Aomp(Package):
version('3.10.0', sha256=versions_dict['3.10.0']['aomp'])
version('3.9.0', sha256=versions_dict['3.9.0']['aomp'])
- version('3.8.0', sha256=versions_dict['3.8.0']['aomp'])
- version('3.7.0', sha256=versions_dict['3.7.0']['aomp'])
- version('3.5.0', sha256=versions_dict['3.5.0']['aomp'])
+ version('3.8.0', sha256=versions_dict['3.8.0']['aomp'], deprecated=True)
+ version('3.7.0', sha256=versions_dict['3.7.0']['aomp'], deprecated=True)
+ version('3.5.0', sha256=versions_dict['3.5.0']['aomp'], deprecated=True)
# Cmake above 3.18 would fail the build on 3.5.0
depends_on('cmake@3:', type='build')
diff --git a/var/spack/repos/builtin/packages/asciidoc/package.py b/var/spack/repos/builtin/packages/asciidoc/package.py
index 89aff06282..81a3a59da6 100644
--- a/var/spack/repos/builtin/packages/asciidoc/package.py
+++ b/var/spack/repos/builtin/packages/asciidoc/package.py
@@ -22,7 +22,7 @@ class Asciidoc(AutotoolsPackage):
version('9.0.3', sha256='b6ef4accd7959f51b532ab4d3aaa211e15f18fd544c4c3cc3ed712f5590a50de')
version('9.0.2', sha256='93fbe32d56380afee2f26389d8ebfdf33de72536449d53308120d3c20d2c1e17')
version('8.6.10', sha256='22d6793d4f48cefb4a6963853212a214591a591ece1bcbc56af3c67c642003ea')
- version('8.6.9', sha256='45e95bed1e341980f7de0a66fdc467090956fe55d4625bdad8057cd926e0c6c6')
+ version('8.6.9', sha256='45e95bed1e341980f7de0a66fdc467090956fe55d4625bdad8057cd926e0c6c6', deprecated=True)
depends_on('libxml2', type=('build', 'run'))
depends_on('libxslt', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/blasr-libcpp/package.py b/var/spack/repos/builtin/packages/blasr-libcpp/package.py
index 76a8e0b55b..19b6dbcf6d 100644
--- a/var/spack/repos/builtin/packages/blasr-libcpp/package.py
+++ b/var/spack/repos/builtin/packages/blasr-libcpp/package.py
@@ -18,7 +18,7 @@ class BlasrLibcpp(Package):
maintainers = ['robqiao']
- version('5.3.1', sha256='45a673255bfe7e29ed1f5bdb6410aa45cb6b907400d038c3da9daf1058b09156')
+ version('5.3.1', sha256='45a673255bfe7e29ed1f5bdb6410aa45cb6b907400d038c3da9daf1058b09156', deprecated=True)
depends_on('pbbam')
depends_on('hdf5+cxx@1.8.12:1.8')
diff --git a/var/spack/repos/builtin/packages/blitz/package.py b/var/spack/repos/builtin/packages/blitz/package.py
index 41ad86e61c..f8684c0025 100644
--- a/var/spack/repos/builtin/packages/blitz/package.py
+++ b/var/spack/repos/builtin/packages/blitz/package.py
@@ -12,8 +12,8 @@ class Blitz(AutotoolsPackage):
url = "https://github.com/blitzpp/blitz/archive/1.0.2.tar.gz"
version('1.0.2', sha256='500db9c3b2617e1f03d0e548977aec10d36811ba1c43bb5ef250c0e3853ae1c2')
- version('1.0.1', sha256='b62fc3f07b64b264307b01fec5e4f2793e09a68dcb5378984aedbc2e4b3adcef')
- version('1.0.0', sha256='79c06ea9a0585ba0e290c8140300e3ad19491c45c1d90feb52819abc3b58a0c1')
+ version('1.0.1', sha256='b62fc3f07b64b264307b01fec5e4f2793e09a68dcb5378984aedbc2e4b3adcef', deprecated=True)
+ version('1.0.0', sha256='79c06ea9a0585ba0e290c8140300e3ad19491c45c1d90feb52819abc3b58a0c1', deprecated=True)
depends_on('python@:2.7', type='build', when='@:1.0.1')
depends_on('python@3:', type='build', when='@1.0.2:')
diff --git a/var/spack/repos/builtin/packages/cbtf-krell/package.py b/var/spack/repos/builtin/packages/cbtf-krell/package.py
index 73251b3734..b260b214d2 100644
--- a/var/spack/repos/builtin/packages/cbtf-krell/package.py
+++ b/var/spack/repos/builtin/packages/cbtf-krell/package.py
@@ -18,9 +18,9 @@ class CbtfKrell(CMakePackage):
git = "https://github.com/OpenSpeedShop/cbtf-krell.git"
version('develop', branch='master')
- version('1.9.4.1', branch='1.9.4.1')
- version('1.9.4', branch='1.9.4')
- version('1.9.3', branch='1.9.3')
+ version('1.9.4.1', branch='1.9.4.1', deprecated=True)
+ version('1.9.4', branch='1.9.4', deprecated=True)
+ version('1.9.3', branch='1.9.3', deprecated=True)
# MPI variants
variant('openmpi', default=False,
diff --git a/var/spack/repos/builtin/packages/chill/package.py b/var/spack/repos/builtin/packages/chill/package.py
index 576ea36fc2..9b85b3c51a 100644
--- a/var/spack/repos/builtin/packages/chill/package.py
+++ b/var/spack/repos/builtin/packages/chill/package.py
@@ -15,8 +15,8 @@ class Chill(AutotoolsPackage):
maintainers = ['dhuth']
- version('master', branch='master')
- version('0.3', sha256='574b622368a6bfaadbe9c1fa02fabefdc6c006069246f67d299f943b7e1d8aa3')
+ version('master', branch='master', deprecated=True)
+ version('0.3', sha256='574b622368a6bfaadbe9c1fa02fabefdc6c006069246f67d299f943b7e1d8aa3', deprecated=True)
depends_on('boost@1.66.0 cxxstd=11', type='build')
depends_on('rose@0.9.13.0: +cxx11', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/citcoms/package.py b/var/spack/repos/builtin/packages/citcoms/package.py
index d0625a5235..ec2b0fda53 100644
--- a/var/spack/repos/builtin/packages/citcoms/package.py
+++ b/var/spack/repos/builtin/packages/citcoms/package.py
@@ -27,7 +27,6 @@ class Citcoms(AutotoolsPackage):
# Required dependencies
depends_on('mpi')
depends_on('zlib')
- depends_on('python@:2', type='run') # needed for post-processing scripts
depends_on('automake', when='@master', type='build')
depends_on('autoconf', when='@master', type='build')
depends_on('libtool', when='@master', type='build')
diff --git a/var/spack/repos/builtin/packages/easybuild/package.py b/var/spack/repos/builtin/packages/easybuild/package.py
index 11c9ce880e..87eca0acfa 100644
--- a/var/spack/repos/builtin/packages/easybuild/package.py
+++ b/var/spack/repos/builtin/packages/easybuild/package.py
@@ -16,7 +16,7 @@ class Easybuild(PythonPackage):
maintainers = ['boegel']
version('4.0.0', sha256='21bcc1048525ad6219667cc97a7421b5388068c670cabba356712e474896de40')
- version('3.1.2', sha256='a966a08e41d3557d7fd3dc5322180c006d27281d9ecc1b1fce1b4518c32664d4')
+ version('3.1.2', sha256='a966a08e41d3557d7fd3dc5322180c006d27281d9ecc1b1fce1b4518c32664d4', deprecated=True)
depends_on('python@2.6:2.8', when='@:3', type=('build', 'run'))
depends_on('python@2.6:2.8,3.5:', when='@4:', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/elpa/package.py b/var/spack/repos/builtin/packages/elpa/package.py
index b6f44589df..e3988a40f4 100644
--- a/var/spack/repos/builtin/packages/elpa/package.py
+++ b/var/spack/repos/builtin/packages/elpa/package.py
@@ -17,19 +17,19 @@ class Elpa(AutotoolsPackage, CudaPackage, ROCmPackage):
version('2021.11.001', sha256='fb361da6c59946661b73e51538d419028f763d7cb9dacf9d8cd5c9cd3fb7802f')
version('2021.05.002_bugfix', sha256='deabc48de5b9e4b2f073d749d335c8f354a7ce4245b643a23b7951cd6c90224b')
version('2021.05.001', sha256='a4f1a4e3964f2473a5f8177f2091a9da5c6b5ef9280b8272dfefcbc3aad44d41')
- version('2020.05.001', sha256='66ff1cf332ce1c82075dc7b5587ae72511d2bcb3a45322c94af6b01996439ce5')
- version('2019.11.001', sha256='10374a8f042e23c7e1094230f7e2993b6f3580908a213dbdf089792d05aff357')
- version('2019.05.002', sha256='d2eab5e5d74f53601220b00d18185670da8c00c13e1c1559ecfb0cd7cb2c4e8d')
- version('2018.11.001', sha256='cc27fe8ba46ce6e6faa8aea02c8c9983052f8e73a00cfea38abf7613cb1e1b16')
- version('2018.05.001.rc1', sha256='598c01da20600a4514ea4d503b93e977ac0367e797cab7a7c1b0e0e3e86490db')
- version('2017.11.001', sha256='59f99c3abe2190fac0db8a301d0b9581ee134f438669dbc92551a54f6f861820')
- version('2017.05.003', sha256='bccd49ce35a323bd734b17642aed8f2588fea4cc78ee8133d88554753bc3bf1b')
- version('2017.05.002', sha256='568b71024c094d667b5cbb23045ad197ed5434071152ac608dae490ace5eb0aa')
- version('2017.05.001', sha256='28f7edad60984d93da299016ad33571dc6db1cdc9fab0ceaef05dc07de2c7dfd')
- version('2016.11.001.pre', sha256='69b67f0f6faaa2b3b5fd848127b632be32771636d2ad04583c5269d550956f92')
- version('2016.05.004', sha256='08c59dc9da458bab856f489d779152e5506e04f0d4b8d6dcf114ca5fbbe46c58')
- version('2016.05.003', sha256='c8da50c987351514e61491e14390cdea4bdbf5b09045261991876ed5b433fca4')
- version('2015.11.001', sha256='c0761a92a31c08a4009c9688c85fc3fc8fde9b6ce05e514c3e1587cf045e9eba')
+ version('2020.05.001', sha256='66ff1cf332ce1c82075dc7b5587ae72511d2bcb3a45322c94af6b01996439ce5', deprecated=True)
+ version('2019.11.001', sha256='10374a8f042e23c7e1094230f7e2993b6f3580908a213dbdf089792d05aff357', deprecated=True)
+ version('2019.05.002', sha256='d2eab5e5d74f53601220b00d18185670da8c00c13e1c1559ecfb0cd7cb2c4e8d', deprecated=True)
+ version('2018.11.001', sha256='cc27fe8ba46ce6e6faa8aea02c8c9983052f8e73a00cfea38abf7613cb1e1b16', deprecated=True)
+ version('2018.05.001.rc1', sha256='598c01da20600a4514ea4d503b93e977ac0367e797cab7a7c1b0e0e3e86490db', deprecated=True)
+ version('2017.11.001', sha256='59f99c3abe2190fac0db8a301d0b9581ee134f438669dbc92551a54f6f861820', deprecated=True)
+ version('2017.05.003', sha256='bccd49ce35a323bd734b17642aed8f2588fea4cc78ee8133d88554753bc3bf1b', deprecated=True)
+ version('2017.05.002', sha256='568b71024c094d667b5cbb23045ad197ed5434071152ac608dae490ace5eb0aa', deprecated=True)
+ version('2017.05.001', sha256='28f7edad60984d93da299016ad33571dc6db1cdc9fab0ceaef05dc07de2c7dfd', deprecated=True)
+ version('2016.11.001.pre', sha256='69b67f0f6faaa2b3b5fd848127b632be32771636d2ad04583c5269d550956f92', deprecated=True)
+ version('2016.05.004', sha256='08c59dc9da458bab856f489d779152e5506e04f0d4b8d6dcf114ca5fbbe46c58', deprecated=True)
+ version('2016.05.003', sha256='c8da50c987351514e61491e14390cdea4bdbf5b09045261991876ed5b433fca4', deprecated=True)
+ version('2015.11.001', sha256='c0761a92a31c08a4009c9688c85fc3fc8fde9b6ce05e514c3e1587cf045e9eba', deprecated=True)
variant('openmp', default=True, description='Activates OpenMP support')
variant('mpi', default=True, description='Activates MPI support')
diff --git a/var/spack/repos/builtin/packages/find-circ/package.py b/var/spack/repos/builtin/packages/find-circ/package.py
index f78caddcd9..8d18878787 100644
--- a/var/spack/repos/builtin/packages/find-circ/package.py
+++ b/var/spack/repos/builtin/packages/find-circ/package.py
@@ -14,7 +14,7 @@ class FindCirc(Package):
homepage = "https://github.com/marvin-jens/find_circ"
url = "https://github.com/marvin-jens/find_circ/archive/v1.2.tar.gz"
- version('1.2', sha256='f88bf9b5d0cc818313074982d4460c96706f555d924e2821832c3d03bf67743e')
+ version('1.2', sha256='f88bf9b5d0cc818313074982d4460c96706f555d924e2821832c3d03bf67743e', deprecated=True)
depends_on('python@2.7:2.8', type=('build', 'run'))
depends_on('py-pysam', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/ganglia/package.py b/var/spack/repos/builtin/packages/ganglia/package.py
index 0c98d7e0ea..de54a26de5 100644
--- a/var/spack/repos/builtin/packages/ganglia/package.py
+++ b/var/spack/repos/builtin/packages/ganglia/package.py
@@ -17,7 +17,7 @@ class Ganglia(AutotoolsPackage):
list_url = "http://jaist.dl.sourceforge.net/project/ganglia/ganglia%20monitoring%20core"
list_depth = 1
- version('3.7.2', sha256='042dbcaf580a661b55ae4d9f9b3566230b2232169a0898e91a797a4c61888409')
+ version('3.7.2', sha256='042dbcaf580a661b55ae4d9f9b3566230b2232169a0898e91a797a4c61888409', deprecated=True)
depends_on('m4', type='build')
depends_on('autoconf', type='build')
diff --git a/var/spack/repos/builtin/packages/gaudi/package.py b/var/spack/repos/builtin/packages/gaudi/package.py
index b23e7bc493..09757880c1 100644
--- a/var/spack/repos/builtin/packages/gaudi/package.py
+++ b/var/spack/repos/builtin/packages/gaudi/package.py
@@ -23,8 +23,8 @@ class Gaudi(CMakePackage):
version('33.1', sha256='7eb6b2af64aeb965228d4b6ea66c7f9f57f832f93d5b8ad55c9105235af5b042')
version('33.0', sha256='76a967c41f579acc432593d498875dd4dc1f8afd5061e692741a355a9cf233c8')
version('32.2', sha256='e9ef3eb57fd9ac7b9d5647e278a84b2e6263f29f0b14dbe1321667d44d969d2e')
- version('31.0', commit='aeb156f0c40571b5753a9e1dab31e331491b2f3e')
- version('30.5', commit='2c70e73ee5b543b26197b90dd59ea4e4d359d230')
+ version('31.0', commit='aeb156f0c40571b5753a9e1dab31e331491b2f3e', deprecated=True)
+ version('30.5', commit='2c70e73ee5b543b26197b90dd59ea4e4d359d230', deprecated=True)
maintainers = ['drbenmorgan', "vvolkl"]
diff --git a/var/spack/repos/builtin/packages/genesis/package.py b/var/spack/repos/builtin/packages/genesis/package.py
index 942c334a3b..8535f0b6f7 100644
--- a/var/spack/repos/builtin/packages/genesis/package.py
+++ b/var/spack/repos/builtin/packages/genesis/package.py
@@ -17,7 +17,7 @@ class Genesis(AutotoolsPackage, CudaPackage):
url = "https://www.r-ccs.riken.jp/labs/cbrt/wp-content/uploads/2020/09/genesis-1.5.1.tar.bz2"
git = "https://github.com/genesis-release-r-ccs/genesis-2.0.git"
- version("master", branch="master")
+ version("master", branch="master", deprecated=True)
version(
"1.6.0",
sha256="d0185a5464ed4231f6ee81f6dcaa15935a99fa30b96658d2b7c25d7fbc5b38e9",
diff --git a/var/spack/repos/builtin/packages/gpdb/package.py b/var/spack/repos/builtin/packages/gpdb/package.py
index dfb1cff18a..7240f1f533 100644
--- a/var/spack/repos/builtin/packages/gpdb/package.py
+++ b/var/spack/repos/builtin/packages/gpdb/package.py
@@ -19,12 +19,12 @@ class Gpdb(AutotoolsPackage):
homepage = "https://github.com/greenplum-db/gpdb"
url = "https://github.com/greenplum-db/gpdb/archive/6.2.1.tar.gz"
- version('6.2.1', sha256='60c81d71665d623ea98a0e9bd8e6df7fecf6b30eb60a5881ccef781ff5214438')
- version('6.1.0', sha256='81fa854b0ac5fe4e0de5fdee9a7b7c2514e1ea1feefa4e4d10518538a5c5b2a8')
- version('6.0.1', sha256='8902f5d64386447f61c25686f283a785858760e0dcf9a049266db058d3597156')
- version('6.0.0', sha256='8514140bee9db514d18a769034562e7f3464f74828595903a64dbf3d175ab71a')
- version('5.24.0', sha256='4ea5cfcc20f149669bb3713378158e15b5c5949b367351a0f497ba1602d61fc1')
- version('5.23.0', sha256='b06a797eb941362d5473b84d5def349b5ce12ce87ab116bea7c74ad193738ae9')
+ version('6.2.1', sha256='60c81d71665d623ea98a0e9bd8e6df7fecf6b30eb60a5881ccef781ff5214438', deprecated=True)
+ version('6.1.0', sha256='81fa854b0ac5fe4e0de5fdee9a7b7c2514e1ea1feefa4e4d10518538a5c5b2a8', deprecated=True)
+ version('6.0.1', sha256='8902f5d64386447f61c25686f283a785858760e0dcf9a049266db058d3597156', deprecated=True)
+ version('6.0.0', sha256='8514140bee9db514d18a769034562e7f3464f74828595903a64dbf3d175ab71a', deprecated=True)
+ version('5.24.0', sha256='4ea5cfcc20f149669bb3713378158e15b5c5949b367351a0f497ba1602d61fc1', deprecated=True)
+ version('5.23.0', sha256='b06a797eb941362d5473b84d5def349b5ce12ce87ab116bea7c74ad193738ae9', deprecated=True)
depends_on('zstd')
depends_on('py-setuptools@:44')
diff --git a/var/spack/repos/builtin/packages/gplates/package.py b/var/spack/repos/builtin/packages/gplates/package.py
index f4834a7922..fbf026f5a5 100644
--- a/var/spack/repos/builtin/packages/gplates/package.py
+++ b/var/spack/repos/builtin/packages/gplates/package.py
@@ -17,8 +17,8 @@ class Gplates(CMakePackage):
homepage = 'https://www.gplates.org'
url = 'https://sourceforge.net/projects/gplates/files/gplates/2.0/gplates-2.0.0-unixsrc.tar.bz2/download'
- version('2.1.0', sha256='5a52242520d7e243c541e164c8417b23f4e17fcd79ed81f865b2c13628bb0e07')
- version('2.0.0', sha256='1c27d3932a851153baee7cec48e57c2bbc87e4eea02f8a986882515ba4b44c0b')
+ version('2.1.0', sha256='5a52242520d7e243c541e164c8417b23f4e17fcd79ed81f865b2c13628bb0e07', deprecated=True)
+ version('2.0.0', sha256='1c27d3932a851153baee7cec48e57c2bbc87e4eea02f8a986882515ba4b44c0b', deprecated=True)
depends_on('cmake@2.8.8:', type='build')
depends_on('ninja', type='build')
diff --git a/var/spack/repos/builtin/packages/grass/package.py b/var/spack/repos/builtin/packages/grass/package.py
index 86f9667ab9..7d8d9e92d5 100644
--- a/var/spack/repos/builtin/packages/grass/package.py
+++ b/var/spack/repos/builtin/packages/grass/package.py
@@ -24,12 +24,12 @@ class Grass(AutotoolsPackage):
version('7.8.2', sha256='33576f7078f805b39ca20c2fa416ac79c64260c0581072a6dc7d813f53aa9abb')
version('7.8.1', sha256='6ae578fd67afcce7abec4ba4505dcc55b3d2dfe0ca46b99d966cb148c654abb3')
version('7.8.0', sha256='4b1192294e959ffd962282344e4ff325c4472f73abe605e246a1da3beda7ccfa')
- version('7.6.1', sha256='9e25c99cafd16ed8f5e2dca75b5a10dc2af0568dbedf3fc39f1c5a0a9c840b0b')
- version('7.4.4', sha256='96a39e273103f7375a670eba94fa3e5dad2819c5c5664c9aee8f145882a94e8c')
- version('7.4.3', sha256='004e65693ee97fd4d5dc7ad244e3286a115dccd88964d04be61c07db6574b399')
- version('7.4.2', sha256='18eb19bc0aa4cd7be3f30f79ac83f9d0a29c63657f4c1b05bf4c5d5d57a8f46d')
- version('7.4.1', sha256='560b8669caaafa9e8dbd4bbf2b4b4bbab7dca1cc46ee828eaf26c744fe0635fc')
- version('7.4.0', sha256='cb6fa188e030a3a447fc5451fbe0ecbeb4069ee2fd1bf52ed8e40e9b89e293cc')
+ version('7.6.1', sha256='9e25c99cafd16ed8f5e2dca75b5a10dc2af0568dbedf3fc39f1c5a0a9c840b0b', deprecated=True)
+ version('7.4.4', sha256='96a39e273103f7375a670eba94fa3e5dad2819c5c5664c9aee8f145882a94e8c', deprecated=True)
+ version('7.4.3', sha256='004e65693ee97fd4d5dc7ad244e3286a115dccd88964d04be61c07db6574b399', deprecated=True)
+ version('7.4.2', sha256='18eb19bc0aa4cd7be3f30f79ac83f9d0a29c63657f4c1b05bf4c5d5d57a8f46d', deprecated=True)
+ version('7.4.1', sha256='560b8669caaafa9e8dbd4bbf2b4b4bbab7dca1cc46ee828eaf26c744fe0635fc', deprecated=True)
+ version('7.4.0', sha256='cb6fa188e030a3a447fc5451fbe0ecbeb4069ee2fd1bf52ed8e40e9b89e293cc', deprecated=True)
variant('cxx', default=True, description='Support C++ functionality')
variant('tiff', default=False, description='Support TIFF functionality')
diff --git a/var/spack/repos/builtin/packages/julia/package.py b/var/spack/repos/builtin/packages/julia/package.py
index c0e7853892..430c532e5a 100644
--- a/var/spack/repos/builtin/packages/julia/package.py
+++ b/var/spack/repos/builtin/packages/julia/package.py
@@ -35,16 +35,16 @@ class Julia(Package):
version('1.4.0', sha256='880c73a08296ce8d94ad9605149f2a2b2b028e7202a700ef725da899300b8be9')
version('1.3.1', sha256='053908ec2706eb76cfdc998c077de123ecb1c60c945b4b5057aa3be19147b723')
version('1.2.0', sha256='2419b268fc5c3666dd9aeb554815fe7cf9e0e7265bc9b94a43957c31a68d9184')
- version('1.1.1', sha256='3c5395dd3419ebb82d57bcc49dc729df3b225b9094e74376f8c649ee35ed79c2')
- version('1.0.0', sha256='1a2497977b1d43bb821a5b7475b4054b29938baae8170881c6b8dd4099d133f1')
- version('0.6.2', sha256='1e34c13091c9ddb47cf87a51566d94a06613f3db3c483b8f63b276e416dd621b')
- version('0.5.2', sha256='f5ef56d79ed55eacba9fe968bb175317be3f61668ef93e747d76607678cc01dd')
- version('0.5.1', sha256='533b6427a1b01bd38ea0601f58a32d15bf403f491b8415e9ce4305b8bc83bb21')
- version('0.5.0', sha256='732478536b6dccecbf56e541eef0aed04de0e6d63ae631b136e033dda2e418a9')
- version('0.4.7', sha256='d658d5bd5fb79b19f3c01cadb9aba8622ca8a12a4b687acc7d99c21413623570')
- version('0.4.6', sha256='4c23c9fc72398014bd39327c2f7efd3a301884567d4cb2a89105c984d4d633ba')
- version('0.4.5', sha256='cbf361c23a77e7647040e8070371691083e92aa93c8a318afcc495ad1c3a71d9')
- version('0.4.3', sha256='2b9df25a8f58df8e43038ec30bae195dfb160abdf925f3fa193b59d40e4113c5')
+ version('1.1.1', sha256='3c5395dd3419ebb82d57bcc49dc729df3b225b9094e74376f8c649ee35ed79c2', deprecated=True)
+ version('1.0.0', sha256='1a2497977b1d43bb821a5b7475b4054b29938baae8170881c6b8dd4099d133f1', deprecated=True)
+ version('0.6.2', sha256='1e34c13091c9ddb47cf87a51566d94a06613f3db3c483b8f63b276e416dd621b', deprecated=True)
+ version('0.5.2', sha256='f5ef56d79ed55eacba9fe968bb175317be3f61668ef93e747d76607678cc01dd', deprecated=True)
+ version('0.5.1', sha256='533b6427a1b01bd38ea0601f58a32d15bf403f491b8415e9ce4305b8bc83bb21', deprecated=True)
+ version('0.5.0', sha256='732478536b6dccecbf56e541eef0aed04de0e6d63ae631b136e033dda2e418a9', deprecated=True)
+ version('0.4.7', sha256='d658d5bd5fb79b19f3c01cadb9aba8622ca8a12a4b687acc7d99c21413623570', deprecated=True)
+ version('0.4.6', sha256='4c23c9fc72398014bd39327c2f7efd3a301884567d4cb2a89105c984d4d633ba', deprecated=True)
+ version('0.4.5', sha256='cbf361c23a77e7647040e8070371691083e92aa93c8a318afcc495ad1c3a71d9', deprecated=True)
+ version('0.4.3', sha256='2b9df25a8f58df8e43038ec30bae195dfb160abdf925f3fa193b59d40e4113c5', deprecated=True)
variant('cxx', default=False, description='Prepare for Julia Cxx package')
variant('mkl', default=False, description='Use Intel MKL')
diff --git a/var/spack/repos/builtin/packages/libproxy/package.py b/var/spack/repos/builtin/packages/libproxy/package.py
index eacbc37804..a7c63b0d67 100644
--- a/var/spack/repos/builtin/packages/libproxy/package.py
+++ b/var/spack/repos/builtin/packages/libproxy/package.py
@@ -15,9 +15,9 @@ class Libproxy(CMakePackage):
version('0.4.17', sha256='88c624711412665515e2800a7e564aabb5b3ee781b9820eca9168035b0de60a9')
version('0.4.16', sha256='9e7959d6ae1d6c817f0ac1e253105ce8d99f55d7821c1b6eaef32bf6879c6f0a')
- version('0.4.15', sha256='18f58b0a0043b6881774187427ead158d310127fc46a1c668ad6d207fb28b4e0')
- version('0.4.14', sha256='6220a6cab837a8996116a0568324cadfd09a07ec16b930d2a330e16d5c2e1eb6')
- version('0.4.13', sha256='d610bc0ef81a18ba418d759c5f4f87bf7102229a9153fb397d7d490987330ffd')
+ version('0.4.15', sha256='18f58b0a0043b6881774187427ead158d310127fc46a1c668ad6d207fb28b4e0', deprecated=True)
+ version('0.4.14', sha256='6220a6cab837a8996116a0568324cadfd09a07ec16b930d2a330e16d5c2e1eb6', deprecated=True)
+ version('0.4.13', sha256='d610bc0ef81a18ba418d759c5f4f87bf7102229a9153fb397d7d490987330ffd', deprecated=True)
depends_on('zlib')
depends_on('python', type=('build', 'run'), when='@0.4.16:')
diff --git a/var/spack/repos/builtin/packages/libxcb/package.py b/var/spack/repos/builtin/packages/libxcb/package.py
index e6fbaf5b99..f2c1169e78 100644
--- a/var/spack/repos/builtin/packages/libxcb/package.py
+++ b/var/spack/repos/builtin/packages/libxcb/package.py
@@ -17,9 +17,9 @@ class Libxcb(AutotoolsPackage):
version('1.14', sha256='a55ed6db98d43469801262d81dc2572ed124edc3db31059d4e9916eb9f844c34')
version('1.13', sha256='0bb3cfd46dbd90066bf4d7de3cad73ec1024c7325a4a0cbf5f4a0d4fa91155fb')
- version('1.12', sha256='092f147149d8a6410647a848378aaae749304d5b73e028ccb8306aa8a9e26f06')
- version('1.11.1', sha256='660312d5e64d0a5800262488042c1707a0261fa01a759bad265b1b75dd4844dd')
- version('1.11', sha256='4b351e1dc95eb0a1c25fa63611a6f4cf033cb63e20997c4874c80bbd1876d0b4')
+ version('1.12', sha256='092f147149d8a6410647a848378aaae749304d5b73e028ccb8306aa8a9e26f06', deprecated=True)
+ version('1.11.1', sha256='660312d5e64d0a5800262488042c1707a0261fa01a759bad265b1b75dd4844dd', deprecated=True)
+ version('1.11', sha256='4b351e1dc95eb0a1c25fa63611a6f4cf033cb63e20997c4874c80bbd1876d0b4', deprecated=True)
depends_on('libpthread-stubs')
depends_on('libxau@0.99.2:')
diff --git a/var/spack/repos/builtin/packages/llvm/package.py b/var/spack/repos/builtin/packages/llvm/package.py
index cfdefbabc2..c23aff0724 100644
--- a/var/spack/repos/builtin/packages/llvm/package.py
+++ b/var/spack/repos/builtin/packages/llvm/package.py
@@ -54,16 +54,16 @@ class Llvm(CMakePackage, CudaPackage):
version('5.0.2', sha256='fe87aa11558c08856739bfd9bd971263a28657663cb0c3a0af01b94f03b0b795')
version('5.0.1', sha256='84ca454abf262579814a2a2b846569f6e0cb3e16dc33ca3642b4f1dff6fbafd3')
version('5.0.0', sha256='1f1843315657a4371d8ca37f01265fa9aae17dbcf46d2d0a95c1fdb3c6a4bab6')
- version('4.0.1', sha256='cd664fb3eec3208c08fb61189c00c9118c290b3be5adb3215a97b24255618be5')
- version('4.0.0', sha256='28ca4b2fc434cb1f558e8865386c233c2a6134437249b8b3765ae745ffa56a34')
- version('3.9.1', sha256='f5b6922a5c65f9232f83d89831191f2c3ccf4f41fdd8c63e6645bbf578c4ab92')
- version('3.9.0', sha256='9c6563a72c8b5b79941c773937d997dd2b1b5b3f640136d02719ec19f35e0333')
- version('3.8.1', sha256='69360f0648fde0dc3d3c4b339624613f3bc2a89c4858933bc3871a250ad02826')
- version('3.8.0', sha256='b5cc5974cc2fd4e9e49e1bbd0700f872501a8678bd9694fa2b36c65c026df1d1')
- version('3.7.1', sha256='d2cb0eb9b8eb21e07605bfe5e7a5c6c5f5f8c2efdac01ec1da6ffacaabe4195a')
- version('3.7.0', sha256='dc00bc230be2006fb87b84f6fe4800ca28bc98e6692811a98195da53c9cb28c6')
- version('3.6.2', sha256='f75d703a388ba01d607f9cf96180863a5e4a106827ade17b221d43e6db20778a')
- version('3.5.1', sha256='5d739684170d5b2b304e4fb521532d5c8281492f71e1a8568187bfa38eb5909d')
+ version('4.0.1', sha256='cd664fb3eec3208c08fb61189c00c9118c290b3be5adb3215a97b24255618be5', deprecated=True)
+ version('4.0.0', sha256='28ca4b2fc434cb1f558e8865386c233c2a6134437249b8b3765ae745ffa56a34', deprecated=True)
+ version('3.9.1', sha256='f5b6922a5c65f9232f83d89831191f2c3ccf4f41fdd8c63e6645bbf578c4ab92', deprecated=True)
+ version('3.9.0', sha256='9c6563a72c8b5b79941c773937d997dd2b1b5b3f640136d02719ec19f35e0333', deprecated=True)
+ version('3.8.1', sha256='69360f0648fde0dc3d3c4b339624613f3bc2a89c4858933bc3871a250ad02826', deprecated=True)
+ version('3.8.0', sha256='b5cc5974cc2fd4e9e49e1bbd0700f872501a8678bd9694fa2b36c65c026df1d1', deprecated=True)
+ version('3.7.1', sha256='d2cb0eb9b8eb21e07605bfe5e7a5c6c5f5f8c2efdac01ec1da6ffacaabe4195a', deprecated=True)
+ version('3.7.0', sha256='dc00bc230be2006fb87b84f6fe4800ca28bc98e6692811a98195da53c9cb28c6', deprecated=True)
+ version('3.6.2', sha256='f75d703a388ba01d607f9cf96180863a5e4a106827ade17b221d43e6db20778a', deprecated=True)
+ version('3.5.1', sha256='5d739684170d5b2b304e4fb521532d5c8281492f71e1a8568187bfa38eb5909d', deprecated=True)
# fmt: on
# NOTE: The debug version of LLVM is an order of magnitude larger than
diff --git a/var/spack/repos/builtin/packages/madgraph5amc/package.py b/var/spack/repos/builtin/packages/madgraph5amc/package.py
index 8d5ef29444..50981e4881 100644
--- a/var/spack/repos/builtin/packages/madgraph5amc/package.py
+++ b/var/spack/repos/builtin/packages/madgraph5amc/package.py
@@ -27,7 +27,7 @@ class Madgraph5amc(Package):
url="https://launchpad.net/mg5amcnlo/2.0/2.8.x/+download/MG5_aMC_v2.8.0.tar.gz")
version('2.7.3.py3', sha256='400c26f9b15b07baaad9bd62091ceea785c2d3a59618fdc27cad213816bc7225')
version('2.7.3.py2', sha256='0b665356f4d9359e6e382e0f408dc11db594734567c6b2f0ec0e0697f2dbe099',
- url="https://launchpad.net/mg5amcnlo/2.0/2.7.x/+download/MG5_aMC_v2.7.3.tar.gz")
+ url="https://launchpad.net/mg5amcnlo/2.0/2.7.x/+download/MG5_aMC_v2.7.3.tar.gz", deprecated=True)
variant('atlas', default=False, description='Apply changes requested by ' +
"the ATLAS experimenent on LHC")
diff --git a/var/spack/repos/builtin/packages/magics/package.py b/var/spack/repos/builtin/packages/magics/package.py
index a760886943..edd47eb980 100644
--- a/var/spack/repos/builtin/packages/magics/package.py
+++ b/var/spack/repos/builtin/packages/magics/package.py
@@ -28,14 +28,14 @@ class Magics(CMakePackage):
version('4.2.6', sha256='9b34a375d9125ab6e8a715b970da2e479f96370bac6a5bb8a015a079ed9e027c')
version('4.2.4', sha256='920c7dbb1aaabe65a31c6c18010829210f8b2f8d614b6c405dc5a4530e346f07')
version('4.1.0', sha256='da626c31f53716990754dd72ab7b2f3902a8ad924b23ef3309bd14900d170541')
- version('2.34.3', sha256='38487562e83c0470f94d9c7fb9418cbadf92f1e643033237baba2abdc77e6238')
- version('2.34.1', sha256='8df27f8f262ebc32a61f8696df15a7b4a6e4203b2a8e53fe7aa13caa1c4e3fa4')
- version('2.33.0', sha256='32d3079749f89988715a8c3df01b712d9b989b7fd242828ec09563e47c5a3e82')
- version('2.32.0', sha256='233b046c93b84be60ac8011212668de35c2693d89fffcaad333b42b8c4ffad06')
- version('2.31.0', sha256='13c314661bb154499a87db9063238d6ecebad0d4fec37b0f3d90fe34aa37eec6')
- version('2.29.6', sha256='88cfa5e2bd823c4669a3d2fe0349f14545e810333c1b4d031ce74a7a5218a2db')
- version('2.29.4', sha256='82bdb4f7e38776776d2155a82d0acaa017402365a043731708345ac4ac00198f')
- version('2.29.0', sha256='4c5067c4630e831bf81d15454476ff0d050c488b768f6a10272aad62ce8d0f92')
+ version('2.34.3', sha256='38487562e83c0470f94d9c7fb9418cbadf92f1e643033237baba2abdc77e6238', deprecated=True)
+ version('2.34.1', sha256='8df27f8f262ebc32a61f8696df15a7b4a6e4203b2a8e53fe7aa13caa1c4e3fa4', deprecated=True)
+ version('2.33.0', sha256='32d3079749f89988715a8c3df01b712d9b989b7fd242828ec09563e47c5a3e82', deprecated=True)
+ version('2.32.0', sha256='233b046c93b84be60ac8011212668de35c2693d89fffcaad333b42b8c4ffad06', deprecated=True)
+ version('2.31.0', sha256='13c314661bb154499a87db9063238d6ecebad0d4fec37b0f3d90fe34aa37eec6', deprecated=True)
+ version('2.29.6', sha256='88cfa5e2bd823c4669a3d2fe0349f14545e810333c1b4d031ce74a7a5218a2db', deprecated=True)
+ version('2.29.4', sha256='82bdb4f7e38776776d2155a82d0acaa017402365a043731708345ac4ac00198f', deprecated=True)
+ version('2.29.0', sha256='4c5067c4630e831bf81d15454476ff0d050c488b768f6a10272aad62ce8d0f92', deprecated=True)
conflicts('%gcc@11:', when='@:4.4', msg='missing #include <limits>')
diff --git a/var/spack/repos/builtin/packages/manta/package.py b/var/spack/repos/builtin/packages/manta/package.py
index 3e1e58b708..baf560e071 100644
--- a/var/spack/repos/builtin/packages/manta/package.py
+++ b/var/spack/repos/builtin/packages/manta/package.py
@@ -12,12 +12,12 @@ class Manta(CMakePackage):
homepage = "https://github.com/Illumina/manta"
url = "https://github.com/Illumina/manta/releases/download/v1.3.2/manta-1.3.2.release_src.tar.bz2"
- version('1.6.0', sha256='c846d61b02483265c09d58bd85dacf5326a94f38179b5ae4f70694be96e1368f')
- version('1.5.0', sha256='9aa1a59c9cb8d2dd33724a42959c9398aff7840c5bf3c895d2483a8093b3d2dc')
- version('1.4.0', sha256='4f8f827485e3ad9a12318bfcbf62fa622263378767514eb938bc02ad5ad74f10')
- version('1.3.2', sha256='eb346d1a44aff1180732dcd03864b89efc1245652e1993107fb60da4ad739f79')
- version('1.3.1', sha256='9ba943623088e552a4b45bccea48125a0553905f4cc7ea86a9de567e155a5888')
- version('1.3.0', sha256='3db4b5475c33e3aeeb5435969c74364af9d2d77dd3bcf8dc70bf44a851e450dd')
+ version('1.6.0', sha256='c846d61b02483265c09d58bd85dacf5326a94f38179b5ae4f70694be96e1368f', deprecated=True)
+ version('1.5.0', sha256='9aa1a59c9cb8d2dd33724a42959c9398aff7840c5bf3c895d2483a8093b3d2dc', deprecated=True)
+ version('1.4.0', sha256='4f8f827485e3ad9a12318bfcbf62fa622263378767514eb938bc02ad5ad74f10', deprecated=True)
+ version('1.3.2', sha256='eb346d1a44aff1180732dcd03864b89efc1245652e1993107fb60da4ad739f79', deprecated=True)
+ version('1.3.1', sha256='9ba943623088e552a4b45bccea48125a0553905f4cc7ea86a9de567e155a5888', deprecated=True)
+ version('1.3.0', sha256='3db4b5475c33e3aeeb5435969c74364af9d2d77dd3bcf8dc70bf44a851e450dd', deprecated=True)
depends_on('cmake@2.8.12:', type='build')
depends_on('python@2.7.0:2.7', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/miniconda2/package.py b/var/spack/repos/builtin/packages/miniconda2/package.py
index 992d40253a..a8e2ab3370 100644
--- a/var/spack/repos/builtin/packages/miniconda2/package.py
+++ b/var/spack/repos/builtin/packages/miniconda2/package.py
@@ -14,13 +14,13 @@ class Miniconda2(Package):
homepage = "https://conda.io/miniconda.html"
url = "https://repo.continuum.io/miniconda/Miniconda2-4.6.14-Linux-x86_64.sh"
- version('4.7.12.1', sha256='383fe7b6c2574e425eee3c65533a5101e68a2d525e66356844a80aa02a556695', expand=False)
- version('4.6.14', sha256='3e20425afa1a2a4c45ee30bd168b90ca30a3fdf8598b61cb68432886aadc6f4d', expand=False)
- version('4.5.11', sha256='0e23e8d0a1a14445f78960a66b363b464b889ee3b0e3f275b7ffb836df1cb0c6', expand=False)
- version('4.5.4', sha256='77d95c99996495b9e44db3c3b7d7981143d32d5e9a58709c51d35bf695fda67d', expand=False)
- version('4.3.30', sha256='0891000ca28359e63aa77e613c01f7a88855dedfc0ddc8be31829f3139318cf3', expand=False)
- version('4.3.14', sha256='2dc629843be954fc747f08ffbcb973b5473f6818464b82a00260c38f687e02f1', expand=False)
- version('4.3.11', sha256='fbc77646cc62e39f4aa5dd1dda1c94cc4e0bc3be580b10aa2ca2ae0013456a87', expand=False)
+ version('4.7.12.1', sha256='383fe7b6c2574e425eee3c65533a5101e68a2d525e66356844a80aa02a556695', expand=False, deprecated=True)
+ version('4.6.14', sha256='3e20425afa1a2a4c45ee30bd168b90ca30a3fdf8598b61cb68432886aadc6f4d', expand=False, deprecated=True)
+ version('4.5.11', sha256='0e23e8d0a1a14445f78960a66b363b464b889ee3b0e3f275b7ffb836df1cb0c6', expand=False, deprecated=True)
+ version('4.5.4', sha256='77d95c99996495b9e44db3c3b7d7981143d32d5e9a58709c51d35bf695fda67d', expand=False, deprecated=True)
+ version('4.3.30', sha256='0891000ca28359e63aa77e613c01f7a88855dedfc0ddc8be31829f3139318cf3', expand=False, deprecated=True)
+ version('4.3.14', sha256='2dc629843be954fc747f08ffbcb973b5473f6818464b82a00260c38f687e02f1', expand=False, deprecated=True)
+ version('4.3.11', sha256='fbc77646cc62e39f4aa5dd1dda1c94cc4e0bc3be580b10aa2ca2ae0013456a87', expand=False, deprecated=True)
def install(self, spec, prefix):
# peel the name of the script out of the pathname of the
diff --git a/var/spack/repos/builtin/packages/mozjs/package.py b/var/spack/repos/builtin/packages/mozjs/package.py
index 9d41f73688..de367be59f 100644
--- a/var/spack/repos/builtin/packages/mozjs/package.py
+++ b/var/spack/repos/builtin/packages/mozjs/package.py
@@ -14,11 +14,11 @@ class Mozjs(AutotoolsPackage):
homepage = "https://firefox-source-docs.mozilla.org/js/index.html"
version('24.2.0', sha256='e62f3f331ddd90df1e238c09d61a505c516fe9fd8c5c95336611d191d18437d8',
- url="https://ftp.mozilla.org/pub/js/mozjs-24.2.0.tar.bz2")
+ url="https://ftp.mozilla.org/pub/js/mozjs-24.2.0.tar.bz2", deprecated=True)
version('17.0.0', sha256='321e964fe9386785d3bf80870640f2fa1c683e32fe988eeb201b04471c172fba',
- url="https://ftp.mozilla.org/pub/js/mozjs17.0.0.tar.gz")
+ url="https://ftp.mozilla.org/pub/js/mozjs17.0.0.tar.gz", deprecated=True)
version('1.8.5', sha256='5d12f7e1f5b4a99436685d97b9b7b75f094d33580227aa998c406bbae6f2a687',
- url="https://ftp.mozilla.org/pub/js/js185-1.0.0.tar.gz")
+ url="https://ftp.mozilla.org/pub/js/js185-1.0.0.tar.gz", deprecated=True)
depends_on('perl@5.6:', type='build')
depends_on('pkgconfig', type='build')
diff --git a/var/spack/repos/builtin/packages/mpip/package.py b/var/spack/repos/builtin/packages/mpip/package.py
index bfeb7af6ff..f638fd6a6f 100644
--- a/var/spack/repos/builtin/packages/mpip/package.py
+++ b/var/spack/repos/builtin/packages/mpip/package.py
@@ -18,7 +18,7 @@ class Mpip(AutotoolsPackage):
version('3.5',
sha256="e366843d53fa016fb03903e51c8aac901aa5155edabe64698a8d6fa618a03bbd")
version("3.4.1",
- sha256="66a86dafde61546be80a130c46e4295f47fb764cf312ae62c70a6dc456a59dac")
+ sha256="66a86dafde61546be80a130c46e4295f47fb764cf312ae62c70a6dc456a59dac", deprecated=True)
variant('demangling', default=True,
description="Build with demangling support")
diff --git a/var/spack/repos/builtin/packages/node-js/package.py b/var/spack/repos/builtin/packages/node-js/package.py
index 0ae95267b3..76aae85cf2 100644
--- a/var/spack/repos/builtin/packages/node-js/package.py
+++ b/var/spack/repos/builtin/packages/node-js/package.py
@@ -32,13 +32,13 @@ class NodeJs(Package):
version('12.18.3', sha256='6ea85f80e01b007cc9b566b8836513bc5102667d833bad4c1092be60fa60c2d4')
version('12.16.0', sha256='ae2dfe74485d821d4fef7cf1802acd2322cd994c853a2327c4306952f4453441')
version('12.14.0', sha256='5c1939867228f3845c808ef84a89c8ee93cc35f857bf7587ecee1b5a6d9da67b')
- version('11.1.0', sha256='3f53b5ac25b2d36ad538267083c0e603d9236867a936c22a9116d95fa10c60d5')
- version('10.13.0', sha256='aa06825fff375ece7c0d881ae0de5d402a857e8cabff9b4a50f2f0b7b44906be')
- version('8.11.4', sha256='459144e361d64ca7362c37cc9717c044ef909d348cb5aa3f2b62538560a6085a')
- version('8.9.1', sha256='32491b7fcc4696b2cdead45c47e52ad16bbed8f78885d32e873952fee0f971e1')
- version('7.1.0', sha256='595e7e2a37d1e0573044a90077bb12c0f750e5d8851899ffa74038238da9a983')
- version('6.3.0', sha256='4ed7a99985f8afee337cc22d5fef61b495ab4238dfff3750ac9019e87fc6aae6')
- version('6.2.2', sha256='b6baee57a0ede496c7c7765001f7495ad74c8dfe8c34f1a6fb2cd5d8d526ffce')
+ version('11.1.0', sha256='3f53b5ac25b2d36ad538267083c0e603d9236867a936c22a9116d95fa10c60d5', deprecated=True)
+ version('10.13.0', sha256='aa06825fff375ece7c0d881ae0de5d402a857e8cabff9b4a50f2f0b7b44906be', deprecated=True)
+ version('8.11.4', sha256='459144e361d64ca7362c37cc9717c044ef909d348cb5aa3f2b62538560a6085a', deprecated=True)
+ version('8.9.1', sha256='32491b7fcc4696b2cdead45c47e52ad16bbed8f78885d32e873952fee0f971e1', deprecated=True)
+ version('7.1.0', sha256='595e7e2a37d1e0573044a90077bb12c0f750e5d8851899ffa74038238da9a983', deprecated=True)
+ version('6.3.0', sha256='4ed7a99985f8afee337cc22d5fef61b495ab4238dfff3750ac9019e87fc6aae6', deprecated=True)
+ version('6.2.2', sha256='b6baee57a0ede496c7c7765001f7495ad74c8dfe8c34f1a6fb2cd5d8d526ffce', deprecated=True)
variant('debug', default=False, description='Include debugger support')
variant('doc', default=False, description='Compile with documentation')
diff --git a/var/spack/repos/builtin/packages/nwchem/package.py b/var/spack/repos/builtin/packages/nwchem/package.py
index 02a18c4270..4ed2c147e9 100644
--- a/var/spack/repos/builtin/packages/nwchem/package.py
+++ b/var/spack/repos/builtin/packages/nwchem/package.py
@@ -22,7 +22,7 @@ class Nwchem(Package):
version('7.0.0', sha256='e3c6510627345be596f4079047e5e7b59e6c20599798ecfe122e3527f8ad6eb0',
url='https://github.com/nwchemgit/nwchem/releases/download/v7.0.0-release/nwchem-7.0.0-release.revision-2c9a1c7c-srconly.2020-02-26.tar.bz2')
version('6.8.1', sha256='fd20f9ca1b410270a815e77e052ec23552f828526cd252709f798f589b2a6431',
- url='https://github.com/nwchemgit/nwchem/releases/download/6.8.1-release/nwchem-6.8.1-release.revision-v6.8-133-ge032219-srconly.2018-06-14.tar.bz2')
+ url='https://github.com/nwchemgit/nwchem/releases/download/6.8.1-release/nwchem-6.8.1-release.revision-v6.8-133-ge032219-srconly.2018-06-14.tar.bz2', deprecated=True)
variant('openmp', default=False, description='Enables OpenMP support')
variant('mpipr', default=False, description='Enables ARMCI with progress rank')
diff --git a/var/spack/repos/builtin/packages/ont-albacore/package.py b/var/spack/repos/builtin/packages/ont-albacore/package.py
index 34e9dd09e6..494a103b18 100644
--- a/var/spack/repos/builtin/packages/ont-albacore/package.py
+++ b/var/spack/repos/builtin/packages/ont-albacore/package.py
@@ -16,7 +16,7 @@ class OntAlbacore(Package):
homepage = "https://nanoporetech.com"
url = "https://mirror.oxfordnanoportal.com/software/analysis/ont_albacore-2.3.1-cp35-cp35m-manylinux1_x86_64.whl"
- version('2.3.1', sha256='dc1af11b0f38b26d071e5389c2b4595c496319c987401754e1853de42467a7d1', expand=False)
+ version('2.3.1', sha256='dc1af11b0f38b26d071e5389c2b4595c496319c987401754e1853de42467a7d1', expand=False, deprecated=True)
extends('python')
diff --git a/var/spack/repos/builtin/packages/openpbs/package.py b/var/spack/repos/builtin/packages/openpbs/package.py
index 7a45467d13..196a0e75fb 100644
--- a/var/spack/repos/builtin/packages/openpbs/package.py
+++ b/var/spack/repos/builtin/packages/openpbs/package.py
@@ -18,7 +18,7 @@ class Openpbs(AutotoolsPackage):
url = "https://github.com/openpbs/openpbs/archive/v19.1.3.tar.gz"
version('20.0.1', sha256='685a4abcea92bf518df02b544d25e237ae8cef76f86525f7bf3554812e9f50fa')
- version('19.1.3', sha256='6e9d2614f839ff3d91d0ace3de04752b7c075da60c72fe6def76437aa05c9857')
+ version('19.1.3', sha256='6e9d2614f839ff3d91d0ace3de04752b7c075da60c72fe6def76437aa05c9857', deprecated=True)
depends_on('autoconf', type='build')
depends_on('automake', type='build')
diff --git a/var/spack/repos/builtin/packages/openspeedshop-utils/package.py b/var/spack/repos/builtin/packages/openspeedshop-utils/package.py
index bc6df87cc4..c7dcf65625 100644
--- a/var/spack/repos/builtin/packages/openspeedshop-utils/package.py
+++ b/var/spack/repos/builtin/packages/openspeedshop-utils/package.py
@@ -32,10 +32,10 @@ class OpenspeedshopUtils(CMakePackage):
homepage = "http://www.openspeedshop.org"
git = "https://github.com/OpenSpeedShop/openspeedshop.git"
- version('develop', branch='master')
- version('2.4.2.1', branch='2.4.2.1')
- version('2.4.2', branch='2.4.2')
- version('2.4.1', branch='2.4.1')
+ version('develop', branch='master', deprecated=True)
+ version('2.4.2.1', branch='2.4.2.1', deprecated=True)
+ version('2.4.2', branch='2.4.2', deprecated=True)
+ version('2.4.1', branch='2.4.1', deprecated=True)
variant('runtime', default=False,
description="build only the runtime libraries and collectors.")
diff --git a/var/spack/repos/builtin/packages/openspeedshop/package.py b/var/spack/repos/builtin/packages/openspeedshop/package.py
index 387840c60f..8d5fe5bf1e 100644
--- a/var/spack/repos/builtin/packages/openspeedshop/package.py
+++ b/var/spack/repos/builtin/packages/openspeedshop/package.py
@@ -25,10 +25,10 @@ class Openspeedshop(CMakePackage):
homepage = "http://www.openspeedshop.org"
git = "https://github.com/OpenSpeedShop/openspeedshop.git"
- version('develop', branch='master')
- version('2.4.2.1', branch='2.4.2.1')
- version('2.4.2', branch='2.4.2')
- version('2.4.1', branch='2.4.1')
+ version('develop', branch='master', deprecated=True)
+ version('2.4.2.1', branch='2.4.2.1', deprecated=True)
+ version('2.4.2', branch='2.4.2', deprecated=True)
+ version('2.4.1', branch='2.4.1', deprecated=True)
variant('runtime', default=False,
description="build only the runtime libraries and collectors.")
diff --git a/var/spack/repos/builtin/packages/partitionfinder/package.py b/var/spack/repos/builtin/packages/partitionfinder/package.py
index 6583022a94..467e84a040 100644
--- a/var/spack/repos/builtin/packages/partitionfinder/package.py
+++ b/var/spack/repos/builtin/packages/partitionfinder/package.py
@@ -14,7 +14,7 @@ class Partitionfinder(Package):
homepage = "https://github.com/brettc/partitionfinder"
url = "https://github.com/brettc/partitionfinder/archive/v2.1.1.tar.gz"
- version('2.1.1', sha256='ccf3718996ee6ca496909b4b97d2b075028e0543eba3bc47a8c14b689c84e061')
+ version('2.1.1', sha256='ccf3718996ee6ca496909b4b97d2b075028e0543eba3bc47a8c14b689c84e061', deprecated=True)
depends_on('python@2.7.10:2', type=('build', 'run'))
depends_on('py-numpy', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/petsc/package.py b/var/spack/repos/builtin/packages/petsc/package.py
index 609a5614cf..684a74a265 100644
--- a/var/spack/repos/builtin/packages/petsc/package.py
+++ b/var/spack/repos/builtin/packages/petsc/package.py
@@ -55,33 +55,33 @@ class Petsc(Package, CudaPackage, ROCmPackage):
version('3.11.2', sha256='4d244dd7d1565d6534e776445fcf6977a6ee2a8bb2be4a36ac1e0fc1f9ad9cfa')
version('3.11.1', sha256='cb627f99f7ce1540ebbbf338189f89a5f1ecf3ab3b5b0e357f9e46c209f1fb23')
version('3.11.0', sha256='b3bed2a9263193c84138052a1b92d47299c3490dd24d1d0bf79fb884e71e678a')
- version('3.10.5', sha256='3a81c8406410e0ffa8a3e9f8efcdf2e683cc40613c9bb5cb378a6498f595803e')
- version('3.10.4', sha256='6c836df84caa9ae683ae401d3f94eb9471353156fec6db602bf2e857e4ec339f')
- version('3.10.3', sha256='cd106babbae091604fee40c258737c84dec048949be779eaef5a745df3dc8de4')
- version('3.10.2', sha256='9d3381bcf9c63abe6521b21a88efc70f8e893293503cff497971d0d9c1ec68cc')
- version('3.10.1', sha256='b6e64ce062113ee0e2e2a6cfffb4d33c085ec91d5bc3afeb33781074aa5a22a5')
- version('3.10.0', sha256='6ebacc010397ea47649495e8363cd7d7d86b876e6df07c6f6ccfa48b22fa555c')
- version('3.9.4', sha256='ecc647c9b1ef565a2c113936454c65632eedc1626e0fc99b5a36accb91195a63')
- version('3.9.3', sha256='6c7f2c7a28433385d74d647b4934aaeea3c1b3053b207973c9497639b6ebf7c8')
- version('3.9.2', sha256='ab396ae5dbfff808df1b5648f5ce30f3021ec70faec3d5cd63df324d416ac6ac')
- version('3.9.1', sha256='742e838a35d278693e956ed1ca4592c1d663451f6beea0694bf334aeb67681e8')
- version('3.9.0', sha256='dcbcab1f321667be1c6e5f8e7b4ee8670bb09e372e51f1ea6471464519d54b2d')
- version('3.8.4', sha256='9f78dc4dd4c58433fa18d3dd3a9029e39a83e4e4b64f845a029dd9fed44bc4c7')
- version('3.8.3', sha256='01f9c3ed937eafac6c9e006510b61c7cd07197115ec40c429fc835f346ca3eac')
- version('3.8.2', sha256='42690508d408e31fb98be738ac097bc869be14c5bfe08dda2184243283ceb16a')
- version('3.8.1', sha256='9b48a9e72d304046923667d2ab1f201778cc56242928a374ff9e074843a334ff')
- version('3.8.0', sha256='1e1b4d90ccbf98dc5759a956ac9a771310a6690f1cbb37b31502b29568262d7e')
- version('3.7.7', sha256='40fd3bc76998e056c4097704c08f28eb89bf3b93164dc9e69abab393f43bf6f0')
- version('3.7.6', sha256='3c8ee051349587d45baa7910c54ce8e0a571592e3b40f3054a7b7f986919d449')
- version('3.7.5', sha256='493ab0b6c1b3fe68e71d990eff87c84f499f680e6d2c0c394e78646a82ed4be3')
- version('3.7.4', sha256='54b804f924ea5be3b6718b4d4e98f8ccb9d1bd6bbbd1e9c0f18c4a90ddf5db18')
- version('3.7.2', sha256='36681dd0df97e0d5cd182d902e89f527eb8f441f05271159dac5340acb4cf0ec')
- version('3.6.4', sha256='eb09925a139b52b4dd5a071b3da4fe2165f1d6e8f71d410479603c9976c940f0')
- version('3.6.3', sha256='776e2644e4003653c56a44a6f7c02c41427af26f7c5cd9bec3aa84ed90223245')
- version('3.5.3', sha256='68e6a42f5ec75bad87f74d4df8f55ad63f0c4d996f162da6713cb3d6f566830d')
- version('3.5.2', sha256='1a8f09af654afab787c732e7b2f5d0c1d856777398148351565389d38d30935e')
- version('3.5.1', sha256='199af205f62dcc572728600670c7d4c8cb0d4efc4172c26f02b895d9dd1df245')
- version('3.4.4', sha256='fa73b99caf70c416a967234f5476cdb1d2c014610ee0619e48f54d8d309631b7')
+ version('3.10.5', sha256='3a81c8406410e0ffa8a3e9f8efcdf2e683cc40613c9bb5cb378a6498f595803e', deprecated=True)
+ version('3.10.4', sha256='6c836df84caa9ae683ae401d3f94eb9471353156fec6db602bf2e857e4ec339f', deprecated=True)
+ version('3.10.3', sha256='cd106babbae091604fee40c258737c84dec048949be779eaef5a745df3dc8de4', deprecated=True)
+ version('3.10.2', sha256='9d3381bcf9c63abe6521b21a88efc70f8e893293503cff497971d0d9c1ec68cc', deprecated=True)
+ version('3.10.1', sha256='b6e64ce062113ee0e2e2a6cfffb4d33c085ec91d5bc3afeb33781074aa5a22a5', deprecated=True)
+ version('3.10.0', sha256='6ebacc010397ea47649495e8363cd7d7d86b876e6df07c6f6ccfa48b22fa555c', deprecated=True)
+ version('3.9.4', sha256='ecc647c9b1ef565a2c113936454c65632eedc1626e0fc99b5a36accb91195a63', deprecated=True)
+ version('3.9.3', sha256='6c7f2c7a28433385d74d647b4934aaeea3c1b3053b207973c9497639b6ebf7c8', deprecated=True)
+ version('3.9.2', sha256='ab396ae5dbfff808df1b5648f5ce30f3021ec70faec3d5cd63df324d416ac6ac', deprecated=True)
+ version('3.9.1', sha256='742e838a35d278693e956ed1ca4592c1d663451f6beea0694bf334aeb67681e8', deprecated=True)
+ version('3.9.0', sha256='dcbcab1f321667be1c6e5f8e7b4ee8670bb09e372e51f1ea6471464519d54b2d', deprecated=True)
+ version('3.8.4', sha256='9f78dc4dd4c58433fa18d3dd3a9029e39a83e4e4b64f845a029dd9fed44bc4c7', deprecated=True)
+ version('3.8.3', sha256='01f9c3ed937eafac6c9e006510b61c7cd07197115ec40c429fc835f346ca3eac', deprecated=True)
+ version('3.8.2', sha256='42690508d408e31fb98be738ac097bc869be14c5bfe08dda2184243283ceb16a', deprecated=True)
+ version('3.8.1', sha256='9b48a9e72d304046923667d2ab1f201778cc56242928a374ff9e074843a334ff', deprecated=True)
+ version('3.8.0', sha256='1e1b4d90ccbf98dc5759a956ac9a771310a6690f1cbb37b31502b29568262d7e', deprecated=True)
+ version('3.7.7', sha256='40fd3bc76998e056c4097704c08f28eb89bf3b93164dc9e69abab393f43bf6f0', deprecated=True)
+ version('3.7.6', sha256='3c8ee051349587d45baa7910c54ce8e0a571592e3b40f3054a7b7f986919d449', deprecated=True)
+ version('3.7.5', sha256='493ab0b6c1b3fe68e71d990eff87c84f499f680e6d2c0c394e78646a82ed4be3', deprecated=True)
+ version('3.7.4', sha256='54b804f924ea5be3b6718b4d4e98f8ccb9d1bd6bbbd1e9c0f18c4a90ddf5db18', deprecated=True)
+ version('3.7.2', sha256='36681dd0df97e0d5cd182d902e89f527eb8f441f05271159dac5340acb4cf0ec', deprecated=True)
+ version('3.6.4', sha256='eb09925a139b52b4dd5a071b3da4fe2165f1d6e8f71d410479603c9976c940f0', deprecated=True)
+ version('3.6.3', sha256='776e2644e4003653c56a44a6f7c02c41427af26f7c5cd9bec3aa84ed90223245', deprecated=True)
+ version('3.5.3', sha256='68e6a42f5ec75bad87f74d4df8f55ad63f0c4d996f162da6713cb3d6f566830d', deprecated=True)
+ version('3.5.2', sha256='1a8f09af654afab787c732e7b2f5d0c1d856777398148351565389d38d30935e', deprecated=True)
+ version('3.5.1', sha256='199af205f62dcc572728600670c7d4c8cb0d4efc4172c26f02b895d9dd1df245', deprecated=True)
+ version('3.4.4', sha256='fa73b99caf70c416a967234f5476cdb1d2c014610ee0619e48f54d8d309631b7', deprecated=True)
variant('shared', default=True,
description='Enables the build of shared libraries')
diff --git a/var/spack/repos/builtin/packages/py-anuga/package.py b/var/spack/repos/builtin/packages/py-anuga/package.py
index 4f88a46f65..68a27c6872 100644
--- a/var/spack/repos/builtin/packages/py-anuga/package.py
+++ b/var/spack/repos/builtin/packages/py-anuga/package.py
@@ -17,7 +17,7 @@ class PyAnuga(PythonPackage):
# The git main branch of the repo is now python3-only
version('main', branch='main')
- version('2.1', sha256='0e56c4a7d55570d7b2c36fa9b53ee4e7b85f62be0b4c03ad8ab5f51464321d2f')
+ version('2.1', sha256='0e56c4a7d55570d7b2c36fa9b53ee4e7b85f62be0b4c03ad8ab5f51464321d2f', deprecated=True)
# Non-versioned dependencies for Anuga main and future versions based on python@3.5:
depends_on('python@3.5:', type=('build', 'run'), when='@2.2:')
diff --git a/var/spack/repos/builtin/packages/py-azureml-dataprep-native/package.py b/var/spack/repos/builtin/packages/py-azureml-dataprep-native/package.py
index 79ab6be499..081b3183ab 100644
--- a/var/spack/repos/builtin/packages/py-azureml-dataprep-native/package.py
+++ b/var/spack/repos/builtin/packages/py-azureml-dataprep-native/package.py
@@ -18,9 +18,9 @@ class PyAzuremlDataprepNative(Package):
url='https://pypi.io/packages/cp38/a/azureml_dataprep_native/azureml_dataprep_native-30.0.0-cp38-cp38-macosx_10_9_x86_64.whl')
version('30.0.0-py3.7', sha256='1fb47c48edf795aaa1b3e589a4d580fc61d639c0bb26519271736c72155d008e', expand=False,
url='https://pypi.io/packages/cp37/a/azureml_dataprep_native/azureml_dataprep_native-30.0.0-cp37-cp37m-macosx_10_9_x86_64.whl')
- version('30.0.0-py3.6', sha256='bd81f0ac0df442b4e09bd2ee76ccff1279437b73e08324d9038c13a5e4708598', expand=False,
+ version('30.0.0-py3.6', sha256='bd81f0ac0df442b4e09bd2ee76ccff1279437b73e08324d9038c13a5e4708598', expand=False, deprecated=True,
url='https://pypi.io/packages/cp36/a/azureml_dataprep_native/azureml_dataprep_native-30.0.0-cp36-cp36m-macosx_10_9_x86_64.whl')
- version('30.0.0-py3.5', sha256='2d1702a2dd9b851ccba9d4624a240f5657f3f34a89977f01ee99f9ccaab905a9', expand=False,
+ version('30.0.0-py3.5', sha256='2d1702a2dd9b851ccba9d4624a240f5657f3f34a89977f01ee99f9ccaab905a9', expand=False, deprecated=True,
url='https://pypi.io/packages/cp35/a/azureml_dataprep_native/azureml_dataprep_native-30.0.0-cp35-cp35m-macosx_10_9_x86_64.whl')
version('14.2.1-py3.7', sha256='0711ea6465a555d4ed052b7ecf3ed580d711ca7499a12be4c9736d5555ab2786', expand=False,
@@ -32,9 +32,9 @@ class PyAzuremlDataprepNative(Package):
url='https://pypi.io/packages/cp38/a/azureml_dataprep_native/azureml_dataprep_native-30.0.0-cp38-cp38-manylinux1_x86_64.whl')
version('30.0.0-py3.7', sha256='897063c21d7b1b8cb070f8992e78291c402559434e9d4a5bb85b595a5c676fe6', expand=False,
url='https://pypi.io/packages/cp37/a/azureml_dataprep_native/azureml_dataprep_native-30.0.0-cp37-cp37m-manylinux1_x86_64.whl')
- version('30.0.0-py3.6', sha256='d2560d3f20cd3b8ad2d2159b1048b83dd330cf8c44aa8becedd6dcaf72876062', expand=False,
+ version('30.0.0-py3.6', sha256='d2560d3f20cd3b8ad2d2159b1048b83dd330cf8c44aa8becedd6dcaf72876062', expand=False, deprecated=True,
url='https://pypi.io/packages/cp36/a/azureml_dataprep_native/azureml_dataprep_native-30.0.0-cp36-cp36m-manylinux1_x86_64.whl')
- version('30.0.0-py3.5', sha256='15b55d903d5688b5a9a290e388db62c8f3d042bc1796db44723f4455b7b18d07', expand=False,
+ version('30.0.0-py3.5', sha256='15b55d903d5688b5a9a290e388db62c8f3d042bc1796db44723f4455b7b18d07', expand=False, deprecated=True,
url='https://pypi.io/packages/cp35/a/azureml_dataprep_native/azureml_dataprep_native-30.0.0-cp35-cp35m-manylinux1_x86_64.whl')
version('14.2.1-py3.7', sha256='0817ec5c378a9bcd1af8edda511ca9d02bdc7087e6f8802c459c9b8f3fde4ade', expand=False,
diff --git a/var/spack/repos/builtin/packages/py-azureml-dataprep-rslex/package.py b/var/spack/repos/builtin/packages/py-azureml-dataprep-rslex/package.py
index 0dfe28c4d5..b98bba9ed1 100644
--- a/var/spack/repos/builtin/packages/py-azureml-dataprep-rslex/package.py
+++ b/var/spack/repos/builtin/packages/py-azureml-dataprep-rslex/package.py
@@ -23,9 +23,9 @@ class PyAzuremlDataprepRslex(Package):
url='https://pypi.io/packages/cp38/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.9.0-cp38-cp38-macosx_10_9_x86_64.whl')
version('1.9.0-py3.7', sha256='9993b369fb9d94d885611859ee957582304c1d8953fc8b48567b786bbfd8062b', expand=False,
url='https://pypi.io/packages/cp37/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.9.0-cp37-cp37m-macosx_10_9_x86_64.whl')
- version('1.9.0-py3.6', sha256='80d518774591deb2c8f1457708c10c9ba348407d7aa49e0710358f46846fcbef', expand=False,
+ version('1.9.0-py3.6', sha256='80d518774591deb2c8f1457708c10c9ba348407d7aa49e0710358f46846fcbef', expand=False, deprecated=True,
url='https://pypi.io/packages/cp36/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.9.0-cp36-cp36m-macosx_10_9_x86_64.whl')
- version('1.9.0-py3.5', sha256='91a5c09796e60570620efb7d66f05647557ec6d39aab8b22c0e13926c402ca5b', expand=False,
+ version('1.9.0-py3.5', sha256='91a5c09796e60570620efb7d66f05647557ec6d39aab8b22c0e13926c402ca5b', expand=False, deprecated=True,
url='https://pypi.io/packages/cp35/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.9.0-cp35-cp35m-macosx_10_9_x86_64.whl')
version('1.8.0-py3.9', sha256='677c25a7e23ec7f91d25aa596f382f7f3b6d60fbc3258bead2b2a6aa42f3a16d', expand=False,
@@ -34,9 +34,9 @@ class PyAzuremlDataprepRslex(Package):
url='https://pypi.io/packages/cp38/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.8.0-cp38-cp38-macosx_10_9_x86_64.whl')
version('1.8.0-py3.7', sha256='8e9feb3187f11fb86f525bc88bf6a6171d7e7d6e2860411a5b82d1f3ecaa8ae8', expand=False,
url='https://pypi.io/packages/cp37/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.8.0-cp37-cp37m-macosx_10_9_x86_64.whl')
- version('1.8.0-py3.6', sha256='f5f7c9af1f1ecfbfee0e5822db180de05c6f5aeed34f6d0b3fd26e210f476d3e', expand=False,
+ version('1.8.0-py3.6', sha256='f5f7c9af1f1ecfbfee0e5822db180de05c6f5aeed34f6d0b3fd26e210f476d3e', expand=False, deprecated=True,
url='https://pypi.io/packages/cp36/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.8.0-cp36-cp36m-macosx_10_9_x86_64.whl')
- version('1.8.0-py3.5', sha256='1c610a25a3e09d4ebb95c42baaa57b5c0c66e31522a6bff52dda0df2d6ac7f4d', expand=False,
+ version('1.8.0-py3.5', sha256='1c610a25a3e09d4ebb95c42baaa57b5c0c66e31522a6bff52dda0df2d6ac7f4d', expand=False, deprecated=True,
url='https://pypi.io/packages/cp35/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.8.0-cp35-cp35m-macosx_10_9_x86_64.whl')
elif sys.platform.startswith('linux'):
version('1.9.0-py3.9', sha256='79d52bb427e3ca781a645c4f11f7a8e5e2c8f61e61bfc162b4062d8e47bcf3d6', expand=False,
@@ -45,9 +45,9 @@ class PyAzuremlDataprepRslex(Package):
url='https://pypi.io/packages/cp38/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.9.0-cp38-cp38-manylinux1_x86_64.whl')
version('1.9.0-py3.7', sha256='d7b6e15401b88cec2915b0bd6298ae7f54584d01ee14e4a24ffb950b7578bceb', expand=False,
url='https://pypi.io/packages/cp37/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.9.0-cp37-cp37m-manylinux1_x86_64.whl')
- version('1.9.0-py3.6', sha256='2723bf56f2d11e5ee00c6619f2365bd594e85ba116ffc912a2433c52913d0890', expand=False,
+ version('1.9.0-py3.6', sha256='2723bf56f2d11e5ee00c6619f2365bd594e85ba116ffc912a2433c52913d0890', expand=False, deprecated=True,
url='https://pypi.io/packages/cp36/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.9.0-cp36-cp36m-manylinux1_x86_64.whl')
- version('1.9.0-py3.5', sha256='d5c6d363da2b3ace1baa9ad3e645ad8a19fdacf0b95dd1f8b6ab19c4371cc10f', expand=False,
+ version('1.9.0-py3.5', sha256='d5c6d363da2b3ace1baa9ad3e645ad8a19fdacf0b95dd1f8b6ab19c4371cc10f', expand=False, deprecated=True,
url='https://pypi.io/packages/cp35/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.9.0-cp35-cp35m-manylinux1_x86_64.whl')
version('1.8.0-py3.9', sha256='e251a077669703ca117b157b225fbc20832169f913476cf79c01a5c6f8ff7a50', expand=False,
@@ -56,9 +56,9 @@ class PyAzuremlDataprepRslex(Package):
url='https://pypi.io/packages/cp38/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.8.0-cp38-cp38-manylinux1_x86_64.whl')
version('1.8.0-py3.7', sha256='0588c6e503635aa6d4c64f7bbb3a3be52679f24ac89e2c8d4e96fd991d7006a2', expand=False,
url='https://pypi.io/packages/cp37/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.8.0-cp37-cp37m-manylinux1_x86_64.whl')
- version('1.8.0-py3.6', sha256='195507ba55aa5ac7c5d37d05b8ac25813add0da5cc9bd4a04f2cb5da984cb287', expand=False,
+ version('1.8.0-py3.6', sha256='195507ba55aa5ac7c5d37d05b8ac25813add0da5cc9bd4a04f2cb5da984cb287', expand=False, deprecated=True,
url='https://pypi.io/packages/cp36/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.8.0-cp36-cp36m-manylinux1_x86_64.whl')
- version('1.8.0-py3.5', sha256='9dfbd1065030dee3aa45b6796c087acffb06cfcbe97cc877e255e21e320362be', expand=False,
+ version('1.8.0-py3.5', sha256='9dfbd1065030dee3aa45b6796c087acffb06cfcbe97cc877e255e21e320362be', expand=False, deprecated=True,
url='https://pypi.io/packages/cp35/a/azureml_dataprep_rslex/azureml_dataprep_rslex-1.8.0-cp35-cp35m-manylinux1_x86_64.whl')
extends('python')
diff --git a/var/spack/repos/builtin/packages/py-backports-functools-lru-cache/package.py b/var/spack/repos/builtin/packages/py-backports-functools-lru-cache/package.py
index 74b54eab7e..aa73d18129 100644
--- a/var/spack/repos/builtin/packages/py-backports-functools-lru-cache/package.py
+++ b/var/spack/repos/builtin/packages/py-backports-functools-lru-cache/package.py
@@ -14,10 +14,10 @@ class PyBackportsFunctoolsLruCache(PythonPackage):
py_namespace = 'backports'
- version('1.5', sha256='9d98697f088eb1b0fa451391f91afb5e3ebde16bbdb272819fd091151fda4f1a')
- version('1.4', sha256='31f235852f88edc1558d428d890663c49eb4514ffec9f3650e7f3c9e4a12e36f')
+ version('1.5', sha256='9d98697f088eb1b0fa451391f91afb5e3ebde16bbdb272819fd091151fda4f1a', deprecated=True)
+ version('1.4', sha256='31f235852f88edc1558d428d890663c49eb4514ffec9f3650e7f3c9e4a12e36f', deprecated=True)
version('1.0.1', sha256='593275768571eb2bcfe0795a30108f8a0e85e14e98c3a5e498e789f891d82f3d',
- url="https://pypi.io/packages/source/b/backports.functools_lru_cache/backports.functools_lru_cache-1.0.1.zip")
+ url="https://pypi.io/packages/source/b/backports.functools_lru_cache/backports.functools_lru_cache-1.0.1.zip", deprecated=True)
depends_on('py-setuptools', type='build')
depends_on('py-setuptools-scm@1.15.0:', type='build')
diff --git a/var/spack/repos/builtin/packages/py-backports-shutil-get-terminal-size/package.py b/var/spack/repos/builtin/packages/py-backports-shutil-get-terminal-size/package.py
index e64459652b..9166aa9d1a 100644
--- a/var/spack/repos/builtin/packages/py-backports-shutil-get-terminal-size/package.py
+++ b/var/spack/repos/builtin/packages/py-backports-shutil-get-terminal-size/package.py
@@ -14,7 +14,7 @@ class PyBackportsShutilGetTerminalSize(PythonPackage):
py_namespace = 'backports'
- version('1.0.0', sha256='713e7a8228ae80341c70586d1cc0a8caa5207346927e23d09dcbcaf18eadec80')
+ version('1.0.0', sha256='713e7a8228ae80341c70586d1cc0a8caa5207346927e23d09dcbcaf18eadec80', deprecated=True)
# newer setuptools version mess with "namespace" packages in an
# incompatible way cf. https://github.com/pypa/setuptools/issues/900
diff --git a/var/spack/repos/builtin/packages/py-bx-python/package.py b/var/spack/repos/builtin/packages/py-bx-python/package.py
index bf0ffcacd6..ac95eb42b9 100644
--- a/var/spack/repos/builtin/packages/py-bx-python/package.py
+++ b/var/spack/repos/builtin/packages/py-bx-python/package.py
@@ -16,7 +16,7 @@ class PyBxPython(PythonPackage):
version('0.8.8', sha256='ad0808ab19c007e8beebadc31827e0d7560ac0e935f1100fb8cc93607400bb47')
version('0.7.4',
sha256='1066d1e56d062d0661f23c19942eb757bd7ab7cb8bc7d89a72fdc3931c995cb4',
- url="https://github.com/bxlab/bx-python/archive/v0.7.4.tar.gz")
+ url="https://github.com/bxlab/bx-python/archive/v0.7.4.tar.gz", deprecated=True)
depends_on('python@2.4:2.7', type=('build', 'run'), when='@:0.7')
depends_on('python@2.7:2.8,3.5:', type=('build', 'run'), when='@0.8:')
diff --git a/var/spack/repos/builtin/packages/py-cdat-lite/package.py b/var/spack/repos/builtin/packages/py-cdat-lite/package.py
index 0c46ae53be..478a5effa4 100644
--- a/var/spack/repos/builtin/packages/py-cdat-lite/package.py
+++ b/var/spack/repos/builtin/packages/py-cdat-lite/package.py
@@ -15,7 +15,7 @@ class PyCdatLite(PythonPackage):
homepage = "http://proj.badc.rl.ac.uk/cedaservices/wiki/CdatLite"
pypi = "cdat-lite/cdat-lite-6.0.1.tar.gz"
- version('6.0.1', sha256='092ae4ff1fb03dee00096e8dd595b769b422759ce972d96525950adf8e1c9374')
+ version('6.0.1', sha256='092ae4ff1fb03dee00096e8dd595b769b422759ce972d96525950adf8e1c9374', deprecated=True)
depends_on("netcdf-c")
depends_on("python@2.5:2.8", type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-checkm-genome/package.py b/var/spack/repos/builtin/packages/py-checkm-genome/package.py
index cf8762bd94..18b3dee2f9 100644
--- a/var/spack/repos/builtin/packages/py-checkm-genome/package.py
+++ b/var/spack/repos/builtin/packages/py-checkm-genome/package.py
@@ -13,8 +13,8 @@ class PyCheckmGenome(PythonPackage):
homepage = "https://ecogenomics.github.io/CheckM"
pypi = "checkm-genome/checkm-genome-1.0.11.tar.gz"
- version('1.0.13', sha256='ffb7e4966c0fac07c7e6e7db6f6eb5b48587fa83987f8a68efbaff2afb7da82e')
- version('1.0.11', sha256='e475d9817d12fa771dbccc80f47758b742fc67c25261dc8ca0c0dc898c2a5190')
+ version('1.0.13', sha256='ffb7e4966c0fac07c7e6e7db6f6eb5b48587fa83987f8a68efbaff2afb7da82e', deprecated=True)
+ version('1.0.11', sha256='e475d9817d12fa771dbccc80f47758b742fc67c25261dc8ca0c0dc898c2a5190', deprecated=True)
depends_on('hmmer@3.1b1:', type=('build', 'run'))
depends_on('pplacer', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-cheetah/package.py b/var/spack/repos/builtin/packages/py-cheetah/package.py
index b5e13cd104..b2c557a2de 100644
--- a/var/spack/repos/builtin/packages/py-cheetah/package.py
+++ b/var/spack/repos/builtin/packages/py-cheetah/package.py
@@ -11,8 +11,8 @@ class PyCheetah(PythonPackage):
pypi = "Cheetah/Cheetah-2.3.0.tar.gz"
- version('2.4.4', sha256='be308229f0c1e5e5af4f27d7ee06d90bb19e6af3059794e5fd536a6f29a9b550')
- version('2.3.0', sha256='2a32d7f7f70be98c2d57aa581f979bc799d4bf17d09fc0e7d77280501edf3e53')
+ version('2.4.4', sha256='be308229f0c1e5e5af4f27d7ee06d90bb19e6af3059794e5fd536a6f29a9b550', deprecated=True)
+ version('2.3.0', sha256='2a32d7f7f70be98c2d57aa581f979bc799d4bf17d09fc0e7d77280501edf3e53', deprecated=True)
depends_on('python@2.0:2', type=('build', 'run'))
depends_on('py-setuptools', type='build')
diff --git a/var/spack/repos/builtin/packages/py-cogent/package.py b/var/spack/repos/builtin/packages/py-cogent/package.py
index cde80da85d..0e277be682 100644
--- a/var/spack/repos/builtin/packages/py-cogent/package.py
+++ b/var/spack/repos/builtin/packages/py-cogent/package.py
@@ -12,9 +12,9 @@ class PyCogent(PythonPackage):
homepage = "https://github.com/Magdoll/Cogent/wiki/Installing-Cogent"
pypi = "cogent/cogent-1.9.tar.gz"
- version('1.9', sha256='57d8c58e0273ffe4f2b907874f9b49dadfd0600f5507b7666369f4e44d56ce14')
+ version('1.9', sha256='57d8c58e0273ffe4f2b907874f9b49dadfd0600f5507b7666369f4e44d56ce14', deprecated=True)
version('1.5.3', url="https://pypi.io/packages/source/c/cogent/cogent-1.5.3.tgz",
- sha256='1215ac219070b7b2207b0b47b4388510f3e30ccd88160aa9f02f25d24bcbcd95')
+ sha256='1215ac219070b7b2207b0b47b4388510f3e30ccd88160aa9f02f25d24bcbcd95', deprecated=True)
variant('matplotlib', default=False, description="graphs related to codon usage")
variant('mpi', default=False, description='MPI required for parallel computation.')
diff --git a/var/spack/repos/builtin/packages/py-crispresso/package.py b/var/spack/repos/builtin/packages/py-crispresso/package.py
index ce5f3f3a56..fa3ccf7eb3 100644
--- a/var/spack/repos/builtin/packages/py-crispresso/package.py
+++ b/var/spack/repos/builtin/packages/py-crispresso/package.py
@@ -13,7 +13,7 @@ class PyCrispresso(PythonPackage):
homepage = "https://github.com/lucapinello/CRISPResso"
pypi = "CRISPResso/CRISPResso-1.0.8.tar.gz"
- version('1.0.8', sha256='b04ac8781ff8ed56d018c357e741f146b72ad7e0d23c9e5bc1e1bcd1a873ebc3')
+ version('1.0.8', sha256='b04ac8781ff8ed56d018c357e741f146b72ad7e0d23c9e5bc1e1bcd1a873ebc3', deprecated=True)
depends_on('py-setuptools', type='build')
depends_on('python@2.7.0:2.7', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-crossmap/package.py b/var/spack/repos/builtin/packages/py-crossmap/package.py
index c2eee33fec..79d08ffa5f 100644
--- a/var/spack/repos/builtin/packages/py-crossmap/package.py
+++ b/var/spack/repos/builtin/packages/py-crossmap/package.py
@@ -15,7 +15,7 @@ class PyCrossmap(PythonPackage, SourceforgePackage):
version('0.3.9', sha256='e20a4653e9fc313ac0f5a6cfc37b42e83c3cf2b42f9483706cfb9ec9ff72c74c')
version('0.3.3', sha256='56d99fd606e13e399b83438953d0d89fc281df1c1e8e47eed7d773e7ec9c88f8')
- version('0.2.9', sha256='57243ee5051352c93088874c797ceac0426f249704ba897360fb628b3365d0af')
+ version('0.2.9', sha256='57243ee5051352c93088874c797ceac0426f249704ba897360fb628b3365d0af', deprecated=True)
depends_on('python@3:', type=('build', 'run'), when='@0.3.0:')
depends_on('python@2.7:2.8', type=('build', 'run'), when='@:0.2.9')
diff --git a/var/spack/repos/builtin/packages/py-cython/package.py b/var/spack/repos/builtin/packages/py-cython/package.py
index e1f432f544..e8eda918e3 100644
--- a/var/spack/repos/builtin/packages/py-cython/package.py
+++ b/var/spack/repos/builtin/packages/py-cython/package.py
@@ -32,7 +32,7 @@ class PyCython(PythonPackage):
version('0.25.2', sha256='f141d1f9c27a07b5a93f7dc5339472067e2d7140d1c5a9e20112a5665ca60306')
version('0.23.5', sha256='0ae5a5451a190e03ee36922c4189ca2c88d1df40a89b4f224bc842d388a0d1b6')
version('0.23.4', sha256='fec42fecee35d6cc02887f1eef4e4952c97402ed2800bfe41bbd9ed1a0730d8e')
- version('0.21.2', sha256='b01af23102143515e6138a4d5e185c2cfa588e0df61c0827de4257bac3393679')
+ version('0.21.2', sha256='b01af23102143515e6138a4d5e185c2cfa588e0df61c0827de4257bac3393679', deprecated=True)
depends_on('python@2.7:2,3.4:', when='@3:', type=('build', 'link', 'run'))
depends_on('python@2.6:2,3.3:', when='@0.23:', type=('build', 'link', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-dataclasses/package.py b/var/spack/repos/builtin/packages/py-dataclasses/package.py
index 1a218f7b00..2336f481e1 100644
--- a/var/spack/repos/builtin/packages/py-dataclasses/package.py
+++ b/var/spack/repos/builtin/packages/py-dataclasses/package.py
@@ -12,8 +12,8 @@ class PyDataclasses(PythonPackage):
homepage = "https://github.com/ericvsmith/dataclasses"
pypi = "dataclasses/dataclasses-0.7.tar.gz"
- version('0.8', sha256='8479067f342acf957dc82ec415d355ab5edb7e7646b90dc6e2fd1d96ad084c97')
- version('0.7', sha256='494a6dcae3b8bcf80848eea2ef64c0cc5cd307ffc263e17cdf42f3e5420808e6')
+ version('0.8', sha256='8479067f342acf957dc82ec415d355ab5edb7e7646b90dc6e2fd1d96ad084c97', deprecated=True)
+ version('0.7', sha256='494a6dcae3b8bcf80848eea2ef64c0cc5cd307ffc263e17cdf42f3e5420808e6', deprecated=True)
depends_on('python@3.6.00:3.6', type=('build', 'run'))
depends_on('py-setuptools', type='build')
diff --git a/var/spack/repos/builtin/packages/py-docutils/package.py b/var/spack/repos/builtin/packages/py-docutils/package.py
index 5d7e4190bd..524a85013b 100644
--- a/var/spack/repos/builtin/packages/py-docutils/package.py
+++ b/var/spack/repos/builtin/packages/py-docutils/package.py
@@ -29,10 +29,7 @@ class PyDocutils(PythonPackage):
depends_on('py-setuptools', when='@0.15:', type='build')
depends_on('python@2.7:2.8,3.5:', when='@0.16:', type=('build', 'run'))
depends_on('python@2.6:2.8,3.3:', when='@0.14:0.15', type=('build', 'run'))
- depends_on('python@2.4:3', when='@0.10:0.13', type=('build', 'run'))
- depends_on('python@2.2.1:3', when='@0.6:0.9', type=('build', 'run'))
- depends_on('python@2.2.1:2.8', when='@0.5.0:0.5', type=('build', 'run'))
- depends_on('python@2.1:2.8', when='@:0.4', type=('build', 'run'))
+ depends_on('python@2.4:3', when='@:0.13', type=('build', 'run'))
# NOTE: This creates symbolic links to be able to run docutils scripts
# without .py file extension similarly to various linux distributions to
diff --git a/var/spack/repos/builtin/packages/py-doxypy/package.py b/var/spack/repos/builtin/packages/py-doxypy/package.py
index 9effe56993..6f6dd1fdd2 100644
--- a/var/spack/repos/builtin/packages/py-doxypy/package.py
+++ b/var/spack/repos/builtin/packages/py-doxypy/package.py
@@ -11,6 +11,6 @@ class PyDoxypy(PythonPackage):
pypi = "doxypy/doxypy-0.3.tar.gz"
- version('0.3', sha256='55d621b0edebd9e2a58a266c0a1d086fc9892de8e07e04dfbb93880a7ae91f00')
+ version('0.3', sha256='55d621b0edebd9e2a58a266c0a1d086fc9892de8e07e04dfbb93880a7ae91f00', deprecated=True)
depends_on('python@:2.8')
diff --git a/var/spack/repos/builtin/packages/py-dp-gp-cluster/package.py b/var/spack/repos/builtin/packages/py-dp-gp-cluster/package.py
index c4a329b217..e308b3d40c 100644
--- a/var/spack/repos/builtin/packages/py-dp-gp-cluster/package.py
+++ b/var/spack/repos/builtin/packages/py-dp-gp-cluster/package.py
@@ -16,7 +16,7 @@ class PyDpGpCluster(PythonPackage):
homepage = "https://github.com/PrincetonUniversity/DP_GP_cluster"
git = "https://github.com/PrincetonUniversity/DP_GP_cluster.git"
- version('2019-09-22', commit='eec12e74219f916aa86e253783905f7b5e30f6f4')
+ version('2019-09-22', commit='eec12e74219f916aa86e253783905f7b5e30f6f4', deprecated=True)
depends_on('python@2.7:2.8', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-easybuild-easyblocks/package.py b/var/spack/repos/builtin/packages/py-easybuild-easyblocks/package.py
index 485c26d777..4360a8623d 100644
--- a/var/spack/repos/builtin/packages/py-easybuild-easyblocks/package.py
+++ b/var/spack/repos/builtin/packages/py-easybuild-easyblocks/package.py
@@ -16,7 +16,7 @@ class PyEasybuildEasyblocks(PythonPackage):
maintainers = ['boegel']
version('4.0.0', sha256='a0fdef6c33c786e323bde1b28bab942fd8e535c26842877d705e692e85b31b07')
- version('3.1.2', sha256='5dcea0d612c5da92815f2c99a591dd2843fe9d76f4c0f4ff4a245d43c39001d8')
+ version('3.1.2', sha256='5dcea0d612c5da92815f2c99a591dd2843fe9d76f4c0f4ff4a245d43c39001d8', deprecated=True)
depends_on('python@2.6:2.8', when='@:3', type=('build', 'run'))
depends_on('python@2.6:2.8,3.5:', when='@4:', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-easybuild-easyconfigs/package.py b/var/spack/repos/builtin/packages/py-easybuild-easyconfigs/package.py
index 167dc02f8e..78a77c4bb6 100644
--- a/var/spack/repos/builtin/packages/py-easybuild-easyconfigs/package.py
+++ b/var/spack/repos/builtin/packages/py-easybuild-easyconfigs/package.py
@@ -16,7 +16,7 @@ class PyEasybuildEasyconfigs(PythonPackage):
maintainers = ['boegel']
version('4.0.0', sha256='90d4e8f8abb11e7ae2265745bbd1241cd69d02570e9b4530175c4b2e2aba754e')
- version('3.1.2', sha256='621d514bacd9a0a9a3d35b40dcc448533ffc545b2c79f50d303822778bcc4aa5')
+ version('3.1.2', sha256='621d514bacd9a0a9a3d35b40dcc448533ffc545b2c79f50d303822778bcc4aa5', deprecated=True)
depends_on('python@2.6:2.8', when='@:3', type=('build', 'run'))
depends_on('python@2.6:2.8,3.5:', when='@4:', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-easybuild-framework/package.py b/var/spack/repos/builtin/packages/py-easybuild-framework/package.py
index 762fe7a3c7..782ac1f431 100644
--- a/var/spack/repos/builtin/packages/py-easybuild-framework/package.py
+++ b/var/spack/repos/builtin/packages/py-easybuild-framework/package.py
@@ -16,7 +16,7 @@ class PyEasybuildFramework(PythonPackage):
maintainers = ['boegel']
version('4.0.0', sha256='f5c40345cc8b9b5750f53263ade6c9c3a8cd3dfab488d58f76ac61a8ca7c5a77')
- version('3.1.2', sha256='a03598478574e2982587796afdb792d78b598f4c09ebf4bec1a690c06470c00d')
+ version('3.1.2', sha256='a03598478574e2982587796afdb792d78b598f4c09ebf4bec1a690c06470c00d', deprecated=True)
depends_on('python@2.6:2.8', when='@:3', type=('build', 'run'))
depends_on('python@2.6:2.8,3.5:', when='@4:', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-enum34/package.py b/var/spack/repos/builtin/packages/py-enum34/package.py
index ee8d8f457a..1445c99209 100644
--- a/var/spack/repos/builtin/packages/py-enum34/package.py
+++ b/var/spack/repos/builtin/packages/py-enum34/package.py
@@ -12,8 +12,8 @@ class PyEnum34(PythonPackage):
homepage = "https://bitbucket.org/stoneleaf/enum34/src"
pypi = "enum34/enum34-1.1.6.tar.gz"
- version('1.1.10', sha256='cce6a7477ed816bd2542d03d53db9f0db935dd013b70f336a95c73979289f248')
- version('1.1.6', sha256='8ad8c4783bf61ded74527bffb48ed9b54166685e4230386a9ed9b1279e2df5b1')
+ version('1.1.10', sha256='cce6a7477ed816bd2542d03d53db9f0db935dd013b70f336a95c73979289f248', deprecated=True)
+ version('1.1.6', sha256='8ad8c4783bf61ded74527bffb48ed9b54166685e4230386a9ed9b1279e2df5b1', deprecated=True)
# enum34 is a backport of the enum library from Python 3.4. It is not
# intended to be used with Python 3.4+. In fact, it won't build at all
diff --git a/var/spack/repos/builtin/packages/py-flye/package.py b/var/spack/repos/builtin/packages/py-flye/package.py
index 2105f86f73..0e3bcdb0b3 100644
--- a/var/spack/repos/builtin/packages/py-flye/package.py
+++ b/var/spack/repos/builtin/packages/py-flye/package.py
@@ -14,7 +14,7 @@ class PyFlye(PythonPackage):
url = "https://github.com/fenderglass/Flye/archive/2.6.tar.gz"
version('2.6', sha256='5bdc44b84712794fa4264eed690d8c65c0d72f495c7bbf2cd15b634254809131')
- version('2.4.2', sha256='5b74d4463b860c9e1614ef655ab6f6f3a5e84a7a4d33faf3b29c7696b542c51a')
+ version('2.4.2', sha256='5b74d4463b860c9e1614ef655ab6f6f3a5e84a7a4d33faf3b29c7696b542c51a', deprecated=True)
# https://github.com/fenderglass/Flye/blob/flye/docs/INSTALL.md
depends_on('python@2.7:2.8,3.5:', when='@2.6:', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-futures/package.py b/var/spack/repos/builtin/packages/py-futures/package.py
index 6556c510b8..9320bebb8c 100644
--- a/var/spack/repos/builtin/packages/py-futures/package.py
+++ b/var/spack/repos/builtin/packages/py-futures/package.py
@@ -11,8 +11,8 @@ class PyFutures(PythonPackage):
pypi = "futures/futures-3.0.5.tar.gz"
- version('3.2.0', sha256='9ec02aa7d674acb8618afb127e27fde7fc68994c0437ad759fa094a574adb265')
- version('3.0.5', sha256='0542525145d5afc984c88f914a0c85c77527f65946617edb5274f72406f981df')
+ version('3.2.0', sha256='9ec02aa7d674acb8618afb127e27fde7fc68994c0437ad759fa094a574adb265', deprecated=True)
+ version('3.0.5', sha256='0542525145d5afc984c88f914a0c85c77527f65946617edb5274f72406f981df', deprecated=True)
depends_on('py-setuptools', type=('build', 'run'))
depends_on('python@2.6:2.8', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-gemini/package.py b/var/spack/repos/builtin/packages/py-gemini/package.py
index ed897fba9f..f468bf5449 100644
--- a/var/spack/repos/builtin/packages/py-gemini/package.py
+++ b/var/spack/repos/builtin/packages/py-gemini/package.py
@@ -17,16 +17,16 @@ class PyGemini(PythonPackage):
maintainers = ['robqiao']
- version('0.30.2', sha256='c7af06a4cc475a846aeeb3cd7fcfb39d6cdd0b76e3b07abab2e5e6e68a3fe431')
- version('0.30.1', sha256='af835ca33bc6d7865def2467c34cb1d539ec542f9514044435bd2252b25a046d')
- version('0.30.0', sha256='a55d0c77342bf650f7e1300cb6ba485407ea3b42f4137a5197248d397a026030')
- version('0.20.1', sha256='cd84aa45ace7a9ffb13ba4176122eab5b9fcc0445b1c0944ecec017f88f2b7f1')
- version('0.20.0', sha256='640b40186fa00f54c1a0cdfab3fc3076b1d3bdf5c6327fcb2a0c51aa1b05878b')
- version('0.19.1', sha256='1154bcb48b1bc78819c5a5e710f5cb0747b01fa0f3113e6081a5a2747c8703e5')
- version('0.19.0', sha256='5146d1b5ed52139c50473aa3625d8df29f2db6d198cfd2c966469e7d585cccf2')
- version('0.18.3', sha256='7c2f99069385547c656021fbb43e0bae4f9fb8a56ad3f6a61235b44fbc1ba6eb')
- version('0.18.2', sha256='cf8a83d48d966a800aa2569076d52c307f4d8264a6ae804c176d61e705c0017e')
- version('0.18.1', sha256='1d3d3b9d47555e1f62c1a870d8fd2ecbfc0bed25910cab31af5b585db3144a68')
+ version('0.30.2', sha256='c7af06a4cc475a846aeeb3cd7fcfb39d6cdd0b76e3b07abab2e5e6e68a3fe431', deprecated=True)
+ version('0.30.1', sha256='af835ca33bc6d7865def2467c34cb1d539ec542f9514044435bd2252b25a046d', deprecated=True)
+ version('0.30.0', sha256='a55d0c77342bf650f7e1300cb6ba485407ea3b42f4137a5197248d397a026030', deprecated=True)
+ version('0.20.1', sha256='cd84aa45ace7a9ffb13ba4176122eab5b9fcc0445b1c0944ecec017f88f2b7f1', deprecated=True)
+ version('0.20.0', sha256='640b40186fa00f54c1a0cdfab3fc3076b1d3bdf5c6327fcb2a0c51aa1b05878b', deprecated=True)
+ version('0.19.1', sha256='1154bcb48b1bc78819c5a5e710f5cb0747b01fa0f3113e6081a5a2747c8703e5', deprecated=True)
+ version('0.19.0', sha256='5146d1b5ed52139c50473aa3625d8df29f2db6d198cfd2c966469e7d585cccf2', deprecated=True)
+ version('0.18.3', sha256='7c2f99069385547c656021fbb43e0bae4f9fb8a56ad3f6a61235b44fbc1ba6eb', deprecated=True)
+ version('0.18.2', sha256='cf8a83d48d966a800aa2569076d52c307f4d8264a6ae804c176d61e705c0017e', deprecated=True)
+ version('0.18.1', sha256='1d3d3b9d47555e1f62c1a870d8fd2ecbfc0bed25910cab31af5b585db3144a68', deprecated=True)
depends_on('python@2.5:2.8', type=('build', 'run'))
depends_on('py-setuptools', type='build')
diff --git a/var/spack/repos/builtin/packages/py-gosam/package.py b/var/spack/repos/builtin/packages/py-gosam/package.py
index ec1b61f63f..4ef25dd5e3 100644
--- a/var/spack/repos/builtin/packages/py-gosam/package.py
+++ b/var/spack/repos/builtin/packages/py-gosam/package.py
@@ -18,8 +18,8 @@ class PyGosam(PythonPackage):
version('2.1.1', tag='2.1.1', commit='4b98559212dfcb71f9d983a3a605e4693ac7f83f')
version('2.0.4', sha256='faf621c70f66d9dffc16ac5cce66258067f39f686d722a4867eeb759fcde4f44',
- url='https://gosam.hepforge.org/downloads/?f=gosam-2.0.4-6d9f1cba.tar.gz')
- version('2.0.3', tag='v2.0.3', commit='4146ab23a06b7c57c10fb36df60758d34aa58387')
+ url='https://gosam.hepforge.org/downloads/?f=gosam-2.0.4-6d9f1cba.tar.gz', deprecated=True)
+ version('2.0.3', tag='v2.0.3', commit='4146ab23a06b7c57c10fb36df60758d34aa58387', deprecated=True)
depends_on('form', type='run')
depends_on('qgraf', type='run')
diff --git a/var/spack/repos/builtin/packages/py-gsi/package.py b/var/spack/repos/builtin/packages/py-gsi/package.py
index c1362319c9..f3c777f8a5 100644
--- a/var/spack/repos/builtin/packages/py-gsi/package.py
+++ b/var/spack/repos/builtin/packages/py-gsi/package.py
@@ -12,7 +12,7 @@ class PyGsi(PythonPackage):
homepage = "https://github.com/DIRACGrid/pyGSI"
pypi = "gsi/GSI-0.6.5.tar.gz"
- version('0.6.5', sha256='8291dd2fab2be12626272629f7f9661487c4e29f1f9ab8c61614c54b06cb0643')
+ version('0.6.5', sha256='8291dd2fab2be12626272629f7f9661487c4e29f1f9ab8c61614c54b06cb0643', deprecated=True)
depends_on('python@2.7.0:2.7', type=('build', 'run'))
depends_on('py-setuptools', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-importlib/package.py b/var/spack/repos/builtin/packages/py-importlib/package.py
index 5883bd20b2..d579632ee4 100644
--- a/var/spack/repos/builtin/packages/py-importlib/package.py
+++ b/var/spack/repos/builtin/packages/py-importlib/package.py
@@ -12,4 +12,4 @@ class PyImportlib(PythonPackage):
homepage = "https://github.com/brettcannon/importlib"
pypi = "importlib/importlib-1.0.4.zip"
- version('1.0.4', sha256='b6ee7066fea66e35f8d0acee24d98006de1a0a8a94a8ce6efe73a9a23c8d9826')
+ version('1.0.4', sha256='b6ee7066fea66e35f8d0acee24d98006de1a0a8a94a8ce6efe73a9a23c8d9826', deprecated=True)
diff --git a/var/spack/repos/builtin/packages/py-iniparse/package.py b/var/spack/repos/builtin/packages/py-iniparse/package.py
index 945d1a030a..a98fb889c6 100644
--- a/var/spack/repos/builtin/packages/py-iniparse/package.py
+++ b/var/spack/repos/builtin/packages/py-iniparse/package.py
@@ -14,7 +14,7 @@ class PyIniparse(PythonPackage):
git = "https://github.com/candlepin/python-iniparse.git"
version('master', branch='master')
- version('0.4', sha256='abc1ee12d2cfb2506109072d6c21e40b6c75a3fe90a9c924327d80bc0d99c054')
+ version('0.4', sha256='abc1ee12d2cfb2506109072d6c21e40b6c75a3fe90a9c924327d80bc0d99c054', deprecated=True)
depends_on('python@2.4:2.8', when='@:0.4', type=('build', 'run'))
depends_on('python@2.6:2.8,3.3:', when='@master:', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-irpf90/package.py b/var/spack/repos/builtin/packages/py-irpf90/package.py
index 7f2fba78cf..40aaf78979 100644
--- a/var/spack/repos/builtin/packages/py-irpf90/package.py
+++ b/var/spack/repos/builtin/packages/py-irpf90/package.py
@@ -17,7 +17,7 @@ class PyIrpf90(PythonPackage):
maintainers = ['scemama']
- version('1.7.7', sha256='c6b2eecb9180f1feaab9644bbed806637a4a30a0fad2c4775a985fcc01a99530')
+ version('1.7.7', sha256='c6b2eecb9180f1feaab9644bbed806637a4a30a0fad2c4775a985fcc01a99530', deprecated=True)
depends_on('python@2.7.0:2.8', type=('build', 'run'))
depends_on('py-setuptools', type='build')
diff --git a/var/spack/repos/builtin/packages/py-itk/package.py b/var/spack/repos/builtin/packages/py-itk/package.py
index 6025f5e926..ffb04b752e 100644
--- a/var/spack/repos/builtin/packages/py-itk/package.py
+++ b/var/spack/repos/builtin/packages/py-itk/package.py
@@ -20,11 +20,11 @@ class PyItk(Package):
version('5.1.1-cp35',
url='https://pypi.io/packages/cp35/i/itk/itk-5.1.1-cp35-cp35m-macosx_10_9_x86_64.whl',
sha256='e94d08a142b72b7219c828e7ca34788b59612fc10dbb2c65afd4457e9810eed1',
- expand=False)
+ expand=False, deprecated=True)
version('5.1.1-cp36',
url='https://pypi.io/packages/cp35/i/itk/itk-5.1.1-cp36-cp36m-macosx_10_9_x86_64.whl',
sha256='94b3c8d2ceba1685ae7e7f2b3bb88bdcd15dee93d369177eb03f676062f7e06f',
- expand=False)
+ expand=False, deprecated=True)
version('5.1.1-cp37',
url='https://pypi.io/packages/cp35/i/itk/itk-5.1.1-cp37-cp37m-macosx_10_9_x86_64.whl',
sha256='f112515483a073fae96d5cfce4eb9f95cbf57a145bbd196b2369a3194e27febf',
@@ -37,7 +37,7 @@ class PyItk(Package):
version('5.1.2-cp36',
url='https://pypi.io/packages/cp36/i/itk/itk-5.1.2-cp36-cp36m-macosx_10_9_x86_64.whl',
sha256='d66f5369768e9449c1bd07210a42e11c565602da1dde3128f554b653a2faaf7b',
- expand=False)
+ expand=False, deprecated=True)
version('5.1.2-cp37',
url='https://pypi.io/packages/cp37/i/itk/itk-5.1.2-cp37-cp37m-macosx_10_9_x86_64.whl',
sha256='0b494485d05306240eaa5ab1a5e00895fcce8fe684c632c02a2373f36d123902',
@@ -55,11 +55,11 @@ class PyItk(Package):
version('5.1.1-cp35',
url='https://pypi.io/packages/cp35/i/itk/itk-5.1.1-cp35-cp35m-manylinux1_x86_64.whl',
sha256='02ba37cda1f4190ca34133e056f9acd5c0104da64455dc9e0cc6bb3eec47f7a6',
- expand=False)
+ expand=False, deprecated=True)
version('5.1.1-cp36',
url='https://pypi.io/packages/cp36/i/itk/itk-5.1.1-cp36-cp36m-manylinux1_x86_64.whl',
sha256='a7602fe2ee031bf70acf54e1aef6e0e01e9fa821ca1926fc70fe3db9167a50f2',
- expand=False)
+ expand=False, deprecated=True)
version('5.1.1-cp37',
url='https://pypi.io/packages/cp37/i/itk/itk-5.1.1-cp37-cp37m-manylinux1_x86_64.whl',
sha256='7c313d2e3a3e37b8e78d0b2d70be2d478c87fde6f27912c714c855a05584b8ee',
@@ -72,7 +72,7 @@ class PyItk(Package):
version('5.1.2-cp36',
url='https://pypi.io/packages/cp36/i/itk/itk-5.1.2-cp36-cp36m-manylinux1_x86_64.whl',
sha256='266e031a0656688b815dc60e9abd58e40ec37c9dcd25aa91634ed2b157ca974c',
- expand=False)
+ expand=False, deprecated=True)
version('5.1.2-cp37',
url='https://pypi.io/packages/cp37/i/itk/itk-5.1.2-cp37-cp37m-manylinux1_x86_64.whl',
sha256='064d9cfdd9547ae3ed850c35b989e0141c4bd434672bc2dd124248aab7bdf09a',
diff --git a/var/spack/repos/builtin/packages/py-macs2/package.py b/var/spack/repos/builtin/packages/py-macs2/package.py
index 62c21dfa36..38c1ad5d98 100644
--- a/var/spack/repos/builtin/packages/py-macs2/package.py
+++ b/var/spack/repos/builtin/packages/py-macs2/package.py
@@ -14,9 +14,9 @@ class PyMacs2(PythonPackage):
pypi = "MACS2/MACS2-2.2.4.tar.gz"
version('2.2.4', sha256='b131aadc8f5fd94bec35308b821e1f7585def788d2e7c756fc8cac402ffee25b')
- version('2.1.4', sha256='e4966d001914320829ab859c7bc8e92c6410aa7bdbddfd00b7625e9a0fb15c97')
- version('2.1.3.3', sha256='00959e523f45ed92b8429f55944eca6984623ac008d7cdb488c3ffe59c21984a')
- version('2.1.1.20160309', sha256='2008ba838f83f34f8e0fddefe2a3a0159f4a740707c68058f815b31ddad53d26')
+ version('2.1.4', sha256='e4966d001914320829ab859c7bc8e92c6410aa7bdbddfd00b7625e9a0fb15c97', deprecated=True)
+ version('2.1.3.3', sha256='00959e523f45ed92b8429f55944eca6984623ac008d7cdb488c3ffe59c21984a', deprecated=True)
+ version('2.1.1.20160309', sha256='2008ba838f83f34f8e0fddefe2a3a0159f4a740707c68058f815b31ddad53d26', deprecated=True)
depends_on('python@3.5:', when='@2.2:', type=('build', 'run'))
depends_on('python@2.7:2.8', when='@:2.1', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-markdown/package.py b/var/spack/repos/builtin/packages/py-markdown/package.py
index 6de296fc64..139f867ed7 100644
--- a/var/spack/repos/builtin/packages/py-markdown/package.py
+++ b/var/spack/repos/builtin/packages/py-markdown/package.py
@@ -19,18 +19,18 @@ class PyMarkdown(PythonPackage):
version('3.3.4', sha256='31b5b491868dcc87d6c24b7e3d19a0d730d59d3e46f4eea6430a321bed387a49')
version('3.1.1', sha256='2e50876bcdd74517e7b71f3e7a76102050edec255b3983403f1a63e7c8a41e7a')
- version('2.6.11', sha256='a856869c7ff079ad84a3e19cd87a64998350c2b94e9e08e44270faef33400f81')
- version('2.6.7', sha256='daebf24846efa7ff269cfde8c41a48bb2303920c7b2c7c5e04fa82e6282d05c0')
- version('2.6.6', sha256='9a292bb40d6d29abac8024887bcfc1159d7a32dc1d6f1f6e8d6d8e293666c504')
- version('2.6.5', sha256='8d94cf6273606f76753fcb1324623792b3738c7612c2b180c85cc5e88642e560')
- version('2.6.4', sha256='e436eee7aaf2a230ca3315034dd39e8a0fc27036708acaa3dd70625ec62a94ce')
- version('2.6.3', sha256='ad75fc03c45492eba3bc63645e1e6465f65523a05fff0abf36910f810465a9af')
- version('2.6.2', sha256='ee17d0d7dc091e645dd48302a2e21301cc68f188505c2069d8635f94554170bf')
- version('2.6.1', sha256='b5879b87e8e5c125c92ab8c8f3babce78ad4e840446eed73c5b6e2984648d2b1')
- version('2.6', sha256='e1c8a489bb7c7154bc5a8c14f0fd1fc356ee36c8b9988f9fd8febff22dd435da')
- version('2.5.2', sha256='284e97e56db9ada03ede9c0ed2870ca6590ce7869f3119104d53510debf1533d')
- version('2.5.1', sha256='8f81ed12c18608a502828acb7d318f362c42f4eca97d01e93cadfc52c1e40b73')
- version('2.5', sha256='6ba74a1e7141c9603750d80711b639a7577bffb785708e6260090239ee5bc76d')
+ version('2.6.11', sha256='a856869c7ff079ad84a3e19cd87a64998350c2b94e9e08e44270faef33400f81', deprecated=True)
+ version('2.6.7', sha256='daebf24846efa7ff269cfde8c41a48bb2303920c7b2c7c5e04fa82e6282d05c0', deprecated=True)
+ version('2.6.6', sha256='9a292bb40d6d29abac8024887bcfc1159d7a32dc1d6f1f6e8d6d8e293666c504', deprecated=True)
+ version('2.6.5', sha256='8d94cf6273606f76753fcb1324623792b3738c7612c2b180c85cc5e88642e560', deprecated=True)
+ version('2.6.4', sha256='e436eee7aaf2a230ca3315034dd39e8a0fc27036708acaa3dd70625ec62a94ce', deprecated=True)
+ version('2.6.3', sha256='ad75fc03c45492eba3bc63645e1e6465f65523a05fff0abf36910f810465a9af', deprecated=True)
+ version('2.6.2', sha256='ee17d0d7dc091e645dd48302a2e21301cc68f188505c2069d8635f94554170bf', deprecated=True)
+ version('2.6.1', sha256='b5879b87e8e5c125c92ab8c8f3babce78ad4e840446eed73c5b6e2984648d2b1', deprecated=True)
+ version('2.6', sha256='e1c8a489bb7c7154bc5a8c14f0fd1fc356ee36c8b9988f9fd8febff22dd435da', deprecated=True)
+ version('2.5.2', sha256='284e97e56db9ada03ede9c0ed2870ca6590ce7869f3119104d53510debf1533d', deprecated=True)
+ version('2.5.1', sha256='8f81ed12c18608a502828acb7d318f362c42f4eca97d01e93cadfc52c1e40b73', deprecated=True)
+ version('2.5', sha256='6ba74a1e7141c9603750d80711b639a7577bffb785708e6260090239ee5bc76d', deprecated=True)
depends_on('python@2.7:2.8,3.2:3.4', when='@:2.6.7')
depends_on('python@2.7:2.8,3.2:3.6', when='@2.6.8:2.6.11')
diff --git a/var/spack/repos/builtin/packages/py-methylcode/package.py b/var/spack/repos/builtin/packages/py-methylcode/package.py
index 1de785fbc3..131e9e1243 100644
--- a/var/spack/repos/builtin/packages/py-methylcode/package.py
+++ b/var/spack/repos/builtin/packages/py-methylcode/package.py
@@ -13,7 +13,7 @@ class PyMethylcode(PythonPackage):
homepage = "https://github.com/brentp/methylcode"
git = "https://github.com/brentp/methylcode.git"
- version('master', branch='master')
+ version('master', branch='master', deprecated=True)
depends_on('python@2.6:2.8', type=('build', 'run'))
depends_on('py-setuptools', type='build')
diff --git a/var/spack/repos/builtin/packages/py-mixedhtseq/package.py b/var/spack/repos/builtin/packages/py-mixedhtseq/package.py
index 4a497872cf..8f4be90479 100644
--- a/var/spack/repos/builtin/packages/py-mixedhtseq/package.py
+++ b/var/spack/repos/builtin/packages/py-mixedhtseq/package.py
@@ -14,7 +14,7 @@ class PyMixedhtseq(PythonPackage):
homepage = "https://github.com/schae234/MixedHTSeq"
url = "https://github.com/schae234/MixedHTSeq/archive/v0.1.0.tar.gz"
- version('0.1.0', sha256='234689c8743ae2ba7ad13bc1809a5248184a4b8d16112d5413e09164ab67e157')
+ version('0.1.0', sha256='234689c8743ae2ba7ad13bc1809a5248184a4b8d16112d5413e09164ab67e157', deprecated=True)
depends_on('python@2.5:2.8', type=('build', 'run'))
depends_on('py-numpy', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-numba/package.py b/var/spack/repos/builtin/packages/py-numba/package.py
index 38eaeac07c..fbb183b776 100644
--- a/var/spack/repos/builtin/packages/py-numba/package.py
+++ b/var/spack/repos/builtin/packages/py-numba/package.py
@@ -17,7 +17,7 @@ class PyNumba(PythonPackage):
version('0.50.1', sha256='89e81b51b880f9b18c82b7095beaccc6856fcf84ba29c4f0ced42e4e5748a3a7')
version('0.48.0', sha256='9d21bc77e67006b5723052840c88cc59248e079a907cc68f1a1a264e1eaba017')
version('0.40.1', sha256='52d046c13bcf0de79dbfb936874b7228f141b9b8e3447cc35855e9ad3e12aa33')
- version('0.35.0', sha256='11564937757605bee590c5758c73cfe9fd6d569726b56d970316a6228971ecc3')
+ version('0.35.0', sha256='11564937757605bee590c5758c73cfe9fd6d569726b56d970316a6228971ecc3', deprecated=True)
depends_on('python@3.7:3.9', type=('build', 'run'), when='@0.54.0:')
depends_on('python@3.6:', type=('build', 'run'), when='@0.48.0:')
diff --git a/var/spack/repos/builtin/packages/py-opentuner/package.py b/var/spack/repos/builtin/packages/py-opentuner/package.py
index f4f054e8ec..e117d9ff59 100644
--- a/var/spack/repos/builtin/packages/py-opentuner/package.py
+++ b/var/spack/repos/builtin/packages/py-opentuner/package.py
@@ -16,7 +16,7 @@ class PyOpentuner(PythonPackage):
version('0.8.7', commit='070c5ce')
version('0.8.2', commit='8e720a2')
- version('0.8.0', commit='4cb9135')
+ version('0.8.0', commit='4cb9135', deprecated=True)
depends_on('python@3:', type=('build', 'run'), when='@0.8.1:')
depends_on('python@2.7:2.8', type=('build', 'run'), when='@:0.8.0')
diff --git a/var/spack/repos/builtin/packages/py-opt-einsum/package.py b/var/spack/repos/builtin/packages/py-opt-einsum/package.py
index cb71c6d7c8..9b980c5a85 100644
--- a/var/spack/repos/builtin/packages/py-opt-einsum/package.py
+++ b/var/spack/repos/builtin/packages/py-opt-einsum/package.py
@@ -16,7 +16,7 @@ class PyOptEinsum(PythonPackage):
version('3.2.1', sha256='83b76a98d18ae6a5cc7a0d88955a7f74881f0e567a0f4c949d24c942753eb998')
version('3.2.0', sha256='738b0a1db1d3084d360081bb64d826f9db06d2df7cc0bf8e2c9356028da1fa31')
version('3.1.0', sha256='edfada4b1d0b3b782ace8bc14e80618ff629abf53143e1e6bbf9bd00b11ece77')
- version('2.3.2', sha256='d3d464b4da7ef09e444c30e4003a27def37f85ff10ff2671e5f7d7813adac35b')
+ version('2.3.2', sha256='d3d464b4da7ef09e444c30e4003a27def37f85ff10ff2671e5f7d7813adac35b', deprecated=True)
depends_on('python@:2', type=('build', 'run'), when='@2')
depends_on('python@3.5:', type=('build', 'run'), when='@3:')
diff --git a/var/spack/repos/builtin/packages/py-picrust/package.py b/var/spack/repos/builtin/packages/py-picrust/package.py
index 9d269537f8..3a1a20db62 100644
--- a/var/spack/repos/builtin/packages/py-picrust/package.py
+++ b/var/spack/repos/builtin/packages/py-picrust/package.py
@@ -13,7 +13,7 @@ class PyPicrust(PythonPackage):
homepage = "https://picrust.github.io/picrust/index.html"
url = "https://github.com/picrust/picrust/releases/download/v1.1.3/picrust-1.1.3.tar.gz"
- version('1.1.3', sha256='7538c8544899b8855deb73a2d7a4ccac4808ff294e161530a8c8762d472d8906')
+ version('1.1.3', sha256='7538c8544899b8855deb73a2d7a4ccac4808ff294e161530a8c8762d472d8906', deprecated=True)
depends_on('python@2.7:2', type=('build', 'run'))
depends_on('py-cogent@1.5.3', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-pil/package.py b/var/spack/repos/builtin/packages/py-pil/package.py
index 04acd5347a..dd5da80008 100644
--- a/var/spack/repos/builtin/packages/py-pil/package.py
+++ b/var/spack/repos/builtin/packages/py-pil/package.py
@@ -12,7 +12,7 @@ class PyPil(PythonPackage):
homepage = "https://pillow.readthedocs.io/en/stable/"
url = "http://effbot.org/media/downloads/Imaging-1.1.7.tar.gz"
- version('1.1.7', sha256='895bc7c2498c8e1f9b99938f1a40dc86b3f149741f105cf7c7bd2e0725405211')
+ version('1.1.7', sha256='895bc7c2498c8e1f9b99938f1a40dc86b3f149741f105cf7c7bd2e0725405211', deprecated=True)
provides('pil')
provides('pil@1.1.7', when='@1.1.7')
diff --git a/var/spack/repos/builtin/packages/py-pillow/package.py b/var/spack/repos/builtin/packages/py-pillow/package.py
index 333c6a3590..04355b9665 100644
--- a/var/spack/repos/builtin/packages/py-pillow/package.py
+++ b/var/spack/repos/builtin/packages/py-pillow/package.py
@@ -119,9 +119,9 @@ class PyPillow(PyPillowBase):
version('6.2.0', sha256='4548236844327a718ce3bb182ab32a16fa2050c61e334e959f554cac052fb0df')
version('6.0.0', sha256='809c0a2ce9032cbcd7b5313f71af4bdc5c8c771cb86eb7559afd954cab82ebb5')
version('5.4.1', sha256='5233664eadfa342c639b9b9977190d64ad7aca4edc51a966394d7e08e7f38a9f')
- version('5.1.0', sha256='cee9bc75bff455d317b6947081df0824a8f118de2786dc3d74a3503fd631f4ef')
- version('3.2.0', sha256='64b0a057210c480aea99406c9391180cd866fc0fd8f0b53367e3af21b195784a')
- version('3.0.0', sha256='ad50bef540fe5518a4653c3820452a881b6a042cb0f8bb7657c491c6bd3654bb')
+ version('5.1.0', sha256='cee9bc75bff455d317b6947081df0824a8f118de2786dc3d74a3503fd631f4ef', deprecated=True)
+ version('3.2.0', sha256='64b0a057210c480aea99406c9391180cd866fc0fd8f0b53367e3af21b195784a', deprecated=True)
+ version('3.0.0', sha256='ad50bef540fe5518a4653c3820452a881b6a042cb0f8bb7657c491c6bd3654bb', deprecated=True)
for ver in [
'8.4.0', '8.0.0',
diff --git a/var/spack/repos/builtin/packages/py-pipits/package.py b/var/spack/repos/builtin/packages/py-pipits/package.py
index 36b550aa3d..75b8a7e74e 100644
--- a/var/spack/repos/builtin/packages/py-pipits/package.py
+++ b/var/spack/repos/builtin/packages/py-pipits/package.py
@@ -13,7 +13,7 @@ class PyPipits(PythonPackage):
url = "https://github.com/hsgweon/pipits/archive/2.4.tar.gz"
version('2.4', sha256='b08a9d70ac6e5dd1c64d56b77384afd69e21e7d641b2fc4416feff862a2cd054')
- version('1.5.0', sha256='6c76fff42a9db62ff4bb1d4d520ebee6cb20d5a726f12c3d5a3d42314947a659')
+ version('1.5.0', sha256='6c76fff42a9db62ff4bb1d4d520ebee6cb20d5a726f12c3d5a3d42314947a659', deprecated=True)
# https://github.com/bioconda/bioconda-recipes/blob/master/recipes/pipits/meta.yaml
depends_on('python@3:', type=('build', 'run'), when='@2:')
diff --git a/var/spack/repos/builtin/packages/py-pygdbmi/package.py b/var/spack/repos/builtin/packages/py-pygdbmi/package.py
index 13f32c68ee..8647fefd38 100644
--- a/var/spack/repos/builtin/packages/py-pygdbmi/package.py
+++ b/var/spack/repos/builtin/packages/py-pygdbmi/package.py
@@ -13,7 +13,7 @@ class PyPygdbmi(PythonPackage):
pypi = "pygdbmi/pygdbmi-0.8.2.0.tar.gz"
version('0.9.0.3', sha256='5bdf2f072e8f2f6471f19f8dcd87d6425c5d8069d47c0a5ffe8d0eff48cb171e')
- version('0.8.2.0', sha256='47cece65808ca42edf6966ac48e2aedca7ae1c675c4d2f0d001c7f3a7fa245fe')
+ version('0.8.2.0', sha256='47cece65808ca42edf6966ac48e2aedca7ae1c675c4d2f0d001c7f3a7fa245fe', deprecated=True)
depends_on('python@3.5:', type=('build', 'run'), when='@0.9.0.3:')
depends_on('python@2.7:2.8,3.4:3.6', type=('build', 'run'), when='@0.9.0.0:0.9.0.2')
diff --git a/var/spack/repos/builtin/packages/py-pygobject/package.py b/var/spack/repos/builtin/packages/py-pygobject/package.py
index ae2c180cee..9438c484a3 100644
--- a/var/spack/repos/builtin/packages/py-pygobject/package.py
+++ b/var/spack/repos/builtin/packages/py-pygobject/package.py
@@ -14,9 +14,9 @@ class PyPygobject(PythonPackage):
version('3.38.0', sha256='0372d1bb9122fc19f500a249b1f38c2bb67485000f5887497b4b205b3e7084d5')
version('3.28.3', sha256='3dd3e21015d06e00482ea665fc1733b77e754a6ab656a5db5d7f7bfaf31ad0b0')
- version('2.28.6', sha256='fb8a1d4f665130a125011659bd347c7339c944232163dbb9a34fd0686577adb8')
+ version('2.28.6', sha256='fb8a1d4f665130a125011659bd347c7339c944232163dbb9a34fd0686577adb8', deprecated=True)
version('2.28.3', sha256='7da88c169a56efccc516cebd9237da3fe518a343095a664607b368fe21df95b6',
- url='http://ftp.gnome.org/pub/GNOME/sources/pygobject/2.28/pygobject-2.28.3.tar.bz2')
+ url='http://ftp.gnome.org/pub/GNOME/sources/pygobject/2.28/pygobject-2.28.3.tar.bz2', deprecated=True)
extends('python')
diff --git a/var/spack/repos/builtin/packages/py-pygtk/package.py b/var/spack/repos/builtin/packages/py-pygtk/package.py
index 9c340d904e..3b987a5edb 100644
--- a/var/spack/repos/builtin/packages/py-pygtk/package.py
+++ b/var/spack/repos/builtin/packages/py-pygtk/package.py
@@ -12,7 +12,7 @@ class PyPygtk(AutotoolsPackage):
homepage = "http://www.pygtk.org/"
url = "http://ftp.gnome.org/pub/GNOME/sources/pygtk/2.24/pygtk-2.24.0.tar.gz"
- version('2.24.0', sha256='6e3e54fa6e65a69ac60bd58cb2e60a57f3346ac52efe995f3d10b6c38c972fd8')
+ version('2.24.0', sha256='6e3e54fa6e65a69ac60bd58cb2e60a57f3346ac52efe995f3d10b6c38c972fd8', deprecated=True)
extends('python')
diff --git a/var/spack/repos/builtin/packages/py-pylint/package.py b/var/spack/repos/builtin/packages/py-pylint/package.py
index f0fd2fefd3..e8d7748ff4 100644
--- a/var/spack/repos/builtin/packages/py-pylint/package.py
+++ b/var/spack/repos/builtin/packages/py-pylint/package.py
@@ -20,11 +20,11 @@ class PyPylint(PythonPackage):
version('2.8.2', sha256='586d8fa9b1891f4b725f587ef267abe2a1bad89d6b184520c7f07a253dd6e217')
version('2.3.1', sha256='723e3db49555abaf9bf79dc474c6b9e2935ad82230b10c1138a71ea41ac0fff1')
version('2.3.0', sha256='ee80c7af4f127b2a480d83010c9f0e97beb8eaa652b78c2837d3ed30b12e1182')
- version('1.9.4', sha256='ee1e85575587c5b58ddafa25e1c1b01691ef172e139fc25585e5d3f02451da93')
+ version('1.9.4', sha256='ee1e85575587c5b58ddafa25e1c1b01691ef172e139fc25585e5d3f02451da93', deprecated=True)
# version('1.7.2', sha256='ea6afb93a9ed810cf52ff3838eb3a15e2bf6a81b80de0eaede1ce442caa5ca69') # see dependencies
- version('1.6.5', sha256='a673984a8dd78e4a8b8cfdee5359a1309d833cf38405008f4a249994a8456719')
- version('1.4.3', sha256='1dce8c143a5aa15e0638887c2b395e2e823223c63ebaf8d5f432a99e44b29f60')
- version('1.4.1', sha256='3e383060edd432cbbd0e8bd686f5facfe918047ffe1bb401ab5897cb6ee0f030')
+ version('1.6.5', sha256='a673984a8dd78e4a8b8cfdee5359a1309d833cf38405008f4a249994a8456719', deprecated=True)
+ version('1.4.3', sha256='1dce8c143a5aa15e0638887c2b395e2e823223c63ebaf8d5f432a99e44b29f60', deprecated=True)
+ version('1.4.1', sha256='3e383060edd432cbbd0e8bd686f5facfe918047ffe1bb401ab5897cb6ee0f030', deprecated=True)
extends('python', ignore=r'bin/pytest')
depends_on('python@2.7:2.8,3.4:3.6', when='@:1', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-pyrad/package.py b/var/spack/repos/builtin/packages/py-pyrad/package.py
index 5ec2c38e84..6433f580a3 100644
--- a/var/spack/repos/builtin/packages/py-pyrad/package.py
+++ b/var/spack/repos/builtin/packages/py-pyrad/package.py
@@ -12,7 +12,7 @@ class PyPyrad(PythonPackage):
homepage = "http://dereneaton.com/software/pyrad/"
url = "https://github.com/dereneaton/pyrad/archive/3.0.66.tar.gz"
- version('3.0.66', sha256='7dbd67e532058f7b7de76d14cf631fd3e3c841cd80fac4e55fbce8bb52ac6537')
+ version('3.0.66', sha256='7dbd67e532058f7b7de76d14cf631fd3e3c841cd80fac4e55fbce8bb52ac6537', deprecated=True)
depends_on('python@:2', type=('build', 'run'))
depends_on('py-setuptools', type='build')
diff --git a/var/spack/repos/builtin/packages/py-pysqlite/package.py b/var/spack/repos/builtin/packages/py-pysqlite/package.py
index 676ce14198..d05b95aa87 100644
--- a/var/spack/repos/builtin/packages/py-pysqlite/package.py
+++ b/var/spack/repos/builtin/packages/py-pysqlite/package.py
@@ -12,7 +12,7 @@ class PyPysqlite(PythonPackage):
homepage = "https://github.com/ghaering/pysqlite"
pypi = "pysqlite/pysqlite-2.8.3.tar.gz"
- version('2.8.3', sha256='17d3335863e8cf8392eea71add33dab3f96d060666fe68ab7382469d307f4490')
+ version('2.8.3', sha256='17d3335863e8cf8392eea71add33dab3f96d060666fe68ab7382469d307f4490', deprecated=True)
# pysqlite is built into Python3
depends_on('python@2.7.0:2.7', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-python-meep/package.py b/var/spack/repos/builtin/packages/py-python-meep/package.py
index 4b8d7b0c2f..3f3edb8616 100644
--- a/var/spack/repos/builtin/packages/py-python-meep/package.py
+++ b/var/spack/repos/builtin/packages/py-python-meep/package.py
@@ -13,10 +13,11 @@ class PyPythonMeep(PythonPackage):
homepage = "https://launchpad.net/python-meep"
url = "https://launchpad.net/python-meep/1.4/1.4/+download/python-meep-1.4.2.tar"
- version('1.4.2', sha256='d91428aa4727c308383cea31ca9cdacee409320c686e9a8368769933e56c8762')
+ version('1.4.2', sha256='d91428aa4727c308383cea31ca9cdacee409320c686e9a8368769933e56c8762', deprecated=True)
variant('mpi', default=True, description='Enable MPI support')
+ depends_on('python@2.6:2.7', type=('build', 'run'))
depends_on('py-numpy', type=('build', 'run'))
depends_on('py-scipy', type=('build', 'run'))
depends_on('py-matplotlib', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-restview/package.py b/var/spack/repos/builtin/packages/py-restview/package.py
index 48e951944f..d12d4ef5ec 100644
--- a/var/spack/repos/builtin/packages/py-restview/package.py
+++ b/var/spack/repos/builtin/packages/py-restview/package.py
@@ -12,7 +12,7 @@ class PyRestview(PythonPackage):
homepage = "https://mg.pov.lt/restview/"
pypi = "restview/restview-2.6.1.tar.gz"
- version('2.6.1', sha256='14d261ee0edf30e0ebc1eb320428ef4898e97422b00337863556966b851fb5af')
+ version('2.6.1', sha256='14d261ee0edf30e0ebc1eb320428ef4898e97422b00337863556966b851fb5af', deprecated=True)
depends_on('python@2.7:2.8,3.3:3.5')
depends_on('py-setuptools', type='build')
diff --git a/var/spack/repos/builtin/packages/py-resultsfile/package.py b/var/spack/repos/builtin/packages/py-resultsfile/package.py
index ef2f25eac5..f8b1d8b264 100644
--- a/var/spack/repos/builtin/packages/py-resultsfile/package.py
+++ b/var/spack/repos/builtin/packages/py-resultsfile/package.py
@@ -16,7 +16,7 @@ class PyResultsfile(PythonPackage):
maintainers = ['scemama']
version('2.0', sha256='2a34208254e4bea155695690437f6a59bf5f7b0ddb421d6c1a2d377510f018f7')
- version('1.0', sha256='e029054b2727131da9684fa2ec9fb8b6a3225dc7f648216a9390267b2d5d60c3')
+ version('1.0', sha256='e029054b2727131da9684fa2ec9fb8b6a3225dc7f648216a9390267b2d5d60c3', deprecated=True)
depends_on('python@2.7:2.8', type=('build', 'run'), when='@1.0:1')
depends_on('python@3:', type=('build', 'run'), when='@2.0:')
diff --git a/var/spack/repos/builtin/packages/py-rnacocktail/package.py b/var/spack/repos/builtin/packages/py-rnacocktail/package.py
index 2250d96813..13b7087159 100644
--- a/var/spack/repos/builtin/packages/py-rnacocktail/package.py
+++ b/var/spack/repos/builtin/packages/py-rnacocktail/package.py
@@ -13,7 +13,7 @@ class PyRnacocktail(PythonPackage):
homepage = "https://bioinform.github.io/rnacocktail/"
url = "https://github.com/bioinform/rnacocktail/archive/v0.2.2.tar.gz"
- version('0.2.2', sha256='34aa0d1d7bd9d80303fe7dac5acc0519f7c1ed986397692588343d82ce45c7a5')
+ version('0.2.2', sha256='34aa0d1d7bd9d80303fe7dac5acc0519f7c1ed986397692588343d82ce45c7a5', deprecated=True)
depends_on('python@2.7:2.8', type=('build', 'run'))
depends_on('py-setuptools', type='build')
diff --git a/var/spack/repos/builtin/packages/py-rseqc/package.py b/var/spack/repos/builtin/packages/py-rseqc/package.py
index 194a3145de..e4daa66f29 100644
--- a/var/spack/repos/builtin/packages/py-rseqc/package.py
+++ b/var/spack/repos/builtin/packages/py-rseqc/package.py
@@ -15,7 +15,7 @@ class PyRseqc(PythonPackage):
pypi = "RSeQC/RSeQC-2.6.4.tar.gz"
version('3.0.1', sha256='d5f4cb2c24a7348929f5c4947d84c5869e8cd2cba5ba5248d991ebb37c4c6b3d')
- version('2.6.4', sha256='e11df661bda1c24fc950f0bce06f586a68ab5f4a2c356f43e4a0dfdc1e184315')
+ version('2.6.4', sha256='e11df661bda1c24fc950f0bce06f586a68ab5f4a2c356f43e4a0dfdc1e184315', deprecated=True)
depends_on('python@2.7:2.8', type=('build', 'run'), when='@:2')
depends_on('python@3.5:', type=('build', 'run'), when='@3:')
diff --git a/var/spack/repos/builtin/packages/py-statsmodels/package.py b/var/spack/repos/builtin/packages/py-statsmodels/package.py
index c5fd16cf90..3992146ed0 100644
--- a/var/spack/repos/builtin/packages/py-statsmodels/package.py
+++ b/var/spack/repos/builtin/packages/py-statsmodels/package.py
@@ -18,7 +18,7 @@ class PyStatsmodels(PythonPackage):
version('0.12.1', sha256='a271b4ccec190148dccda25f0cbdcbf871f408fc1394a10a7dc1af4a62b91c8e')
version('0.10.2', sha256='9cd2194c6642a8754e85f9a6e6912cdf996bebf6ff715d3cc67f65dadfd37cc9')
version('0.10.1', sha256='320659a80f916c2edf9dfbe83512d9004bb562b72eedb7d9374562038697fa10')
- version('0.8.0', sha256='26431ab706fbae896db7870a0892743bfbb9f5c83231644692166a31d2d86048')
+ version('0.8.0', sha256='26431ab706fbae896db7870a0892743bfbb9f5c83231644692166a31d2d86048', deprecated=True)
variant('plotting', default=False, description='With matplotlib')
diff --git a/var/spack/repos/builtin/packages/py-storm/package.py b/var/spack/repos/builtin/packages/py-storm/package.py
index 5eead17bab..fa2fc56ef0 100644
--- a/var/spack/repos/builtin/packages/py-storm/package.py
+++ b/var/spack/repos/builtin/packages/py-storm/package.py
@@ -14,7 +14,7 @@ class PyStorm(PythonPackage):
version('0.25', sha256='ec7cc8897638f94f6b75c6a2af74aa9b31f5492d7a2f9482c08a8dd7b46adb14')
version('0.23', sha256='01c59f1c898fb9891333abd65519ba2dd5f68623ac8e67b54932e99ce52593d3',
url='https://files.pythonhosted.org/packages/source/s/storm/storm-0.23.tar.bz2')
- version('0.20', sha256='35f5883e93a262002ca59dbb39645c67434a182d758543c4a2467ff690ac23a5')
+ version('0.20', sha256='35f5883e93a262002ca59dbb39645c67434a182d758543c4a2467ff690ac23a5', deprecated=True)
depends_on('py-setuptools', type='build')
depends_on('py-six', type=('build', 'run'), when='@0.23:')
diff --git a/var/spack/repos/builtin/packages/py-tap-py/package.py b/var/spack/repos/builtin/packages/py-tap-py/package.py
index 103ea17122..830b176642 100644
--- a/var/spack/repos/builtin/packages/py-tap-py/package.py
+++ b/var/spack/repos/builtin/packages/py-tap-py/package.py
@@ -14,7 +14,7 @@ class PyTapPy(PythonPackage):
version('3.0', sha256='f5eeeeebfd64e53d32661752bb4c288589a3babbb96db3f391a4ec29f1359c70')
version('2.6.2', sha256='5f219d92dbad5e378f8f7549cdfe655b0d5fd2a778f9c83bee51b61c6ca40efb')
- version('1.6', sha256='3ee315567cd1cf444501c405b7f7146ffdb2e630bac58d0840d378a3b9a0dbe4')
+ version('1.6', sha256='3ee315567cd1cf444501c405b7f7146ffdb2e630bac58d0840d378a3b9a0dbe4', deprecated=True)
extends('python', ignore='bin/nosetests|bin/pygmentize')
diff --git a/var/spack/repos/builtin/packages/py-typing/package.py b/var/spack/repos/builtin/packages/py-typing/package.py
index 7b9d339fdc..8c72c4c9a9 100644
--- a/var/spack/repos/builtin/packages/py-typing/package.py
+++ b/var/spack/repos/builtin/packages/py-typing/package.py
@@ -13,11 +13,11 @@ class PyTyping(PythonPackage):
homepage = "https://docs.python.org/3/library/typing.html"
pypi = "typing/typing-3.7.4.1.tar.gz"
- version('3.7.4.3', sha256='1187fb9c82fd670d10aa07bbb6cfcfe4bdda42d6fab8d5134f04e8c4d0b71cc9')
- version('3.7.4.1', sha256='91dfe6f3f706ee8cc32d38edbbf304e9b7583fb37108fef38229617f8b3eba23')
- version('3.6.6', sha256='4027c5f6127a6267a435201981ba156de91ad0d1d98e9ddc2aa173453453492d')
- version('3.6.4', sha256='d400a9344254803a2368533e4533a4200d21eb7b6b729c173bc38201a74db3f2')
- version('3.6.1', sha256='c36dec260238e7464213dcd50d4b5ef63a507972f5780652e835d0228d0edace')
+ version('3.7.4.3', sha256='1187fb9c82fd670d10aa07bbb6cfcfe4bdda42d6fab8d5134f04e8c4d0b71cc9', deprecated=True)
+ version('3.7.4.1', sha256='91dfe6f3f706ee8cc32d38edbbf304e9b7583fb37108fef38229617f8b3eba23', deprecated=True)
+ version('3.6.6', sha256='4027c5f6127a6267a435201981ba156de91ad0d1d98e9ddc2aa173453453492d', deprecated=True)
+ version('3.6.4', sha256='d400a9344254803a2368533e4533a4200d21eb7b6b729c173bc38201a74db3f2', deprecated=True)
+ version('3.6.1', sha256='c36dec260238e7464213dcd50d4b5ef63a507972f5780652e835d0228d0edace', deprecated=True)
# Don't use this with new versions of python (3.5+)
# python 3.7 and later will actively not import
diff --git a/var/spack/repos/builtin/packages/py-vcf-kit/package.py b/var/spack/repos/builtin/packages/py-vcf-kit/package.py
index 6875ce7d6a..5db1f02667 100644
--- a/var/spack/repos/builtin/packages/py-vcf-kit/package.py
+++ b/var/spack/repos/builtin/packages/py-vcf-kit/package.py
@@ -13,7 +13,7 @@ class PyVcfKit(PythonPackage):
homepage = "https://github.com/AndersenLab/VCF-kit"
url = "https://github.com/AndersenLab/VCF-kit/archive/0.1.6.tar.gz"
- version('0.1.6', sha256='4865414ac9dc6996c0baeefadf1d528c28e6d0c3cc3dbdc28a2cdc6e06212428')
+ version('0.1.6', sha256='4865414ac9dc6996c0baeefadf1d528c28e6d0c3cc3dbdc28a2cdc6e06212428', deprecated=True)
depends_on('python@2.7:2.8', type=('build', 'run'))
depends_on('py-setuptools', type='build')
diff --git a/var/spack/repos/builtin/packages/py-weave/package.py b/var/spack/repos/builtin/packages/py-weave/package.py
index 9c448f8119..78b4927207 100644
--- a/var/spack/repos/builtin/packages/py-weave/package.py
+++ b/var/spack/repos/builtin/packages/py-weave/package.py
@@ -17,7 +17,7 @@ class PyWeave(PythonPackage):
homepage = "https://www.github.com/scipy/weave"
pypi = "weave/weave-0.17.0.tar.gz"
- version('0.17.0', sha256='2703f3ae6d23ad47b5f09b6bcb7affd0fb587120a0c973e7be40ef24de709998')
+ version('0.17.0', sha256='2703f3ae6d23ad47b5f09b6bcb7affd0fb587120a0c973e7be40ef24de709998', deprecated=True)
depends_on('python@2.6:2.8', type=('build', 'run'))
depends_on('py-setuptools', type='build')
diff --git a/var/spack/repos/builtin/packages/python/package.py b/var/spack/repos/builtin/packages/python/package.py
index 896870e6db..989bc9e114 100644
--- a/var/spack/repos/builtin/packages/python/package.py
+++ b/var/spack/repos/builtin/packages/python/package.py
@@ -68,49 +68,49 @@ class Python(AutotoolsPackage):
version('3.7.2', sha256='f09d83c773b9cc72421abba2c317e4e6e05d919f9bcf34468e192b6a6c8e328d')
version('3.7.1', sha256='36c1b81ac29d0f8341f727ef40864d99d8206897be96be73dc34d4739c9c9f06')
version('3.7.0', sha256='85bb9feb6863e04fb1700b018d9d42d1caac178559ffa453d7e6a436e259fd0d')
- version('3.6.15', sha256='54570b7e339e2cfd72b29c7e2fdb47c0b7b18b7412e61de5b463fc087c13b043')
- version('3.6.14', sha256='70064897bc434d6eae8bcc3e5678f282b5ea776d60e695da548a1219ccfd27a5')
- version('3.6.13', sha256='614950d3d54f6e78dac651b49c64cfe2ceefea5af3aff3371a9e4b27a53b2669')
- version('3.6.12', sha256='12dddbe52385a0f702fb8071e12dcc6b3cb2dde07cd8db3ed60e90d90ab78693')
- version('3.6.11', sha256='96621902f89746fffc22f39749c07da7c2917b232e72352e6837d41850f7b90c')
- version('3.6.10', sha256='7034dd7cba98d4f94c74f9edd7345bac71c8814c41672c64d9044fa2f96f334d')
- version('3.6.9', sha256='47fc92a1dcb946b9ed0abc311d3767b7215c54e655b17fd1d3f9b538195525aa')
- version('3.6.8', sha256='7f5b1f08b3b0a595387ef6c64c85b1b13b38abef0dd871835ee923262e4f32f0')
- version('3.6.7', sha256='b7c36f7ed8f7143b2c46153b7332db2227669f583ea0cce753facf549d1a4239')
- version('3.6.6', sha256='7d56dadf6c7d92a238702389e80cfe66fbfae73e584189ed6f89c75bbf3eda58')
- version('3.6.5', sha256='53a3e17d77cd15c5230192b6a8c1e031c07cd9f34a2f089a731c6f6bd343d5c6')
- version('3.6.4', sha256='7dc453e1a93c083388eb1a23a256862407f8234a96dc4fae0fc7682020227486')
- version('3.6.3', sha256='ab6193af1921b30f587b302fe385268510e80187ca83ca82d2bfe7ab544c6f91')
- version('3.6.2', sha256='7919489310a5f17f7acbab64d731e46dca0702874840dadce8bd4b2b3b8e7a82')
- version('3.6.1', sha256='aa50b0143df7c89ce91be020fe41382613a817354b33acdc6641b44f8ced3828')
- version('3.6.0', sha256='aa472515800d25a3739833f76ca3735d9f4b2fe77c3cb21f69275e0cce30cb2b')
- version('3.5.10', sha256='3496a0daf51913718a6f10e3eda51fa43634cb6151cb096f312d48bdbeff7d3a')
- version('3.5.9', sha256='67a1d4fc6e4540d6a092cadc488e533afa961b3c9becc74dc3d6b55cb56e0cc1')
- version('3.5.8', sha256='18c88dfd260147bc7247e6356010e5d4916dfbfc480f6434917f88e61228177a')
- version('3.5.7', sha256='542d94920a2a06a471a73b51614805ad65366af98145b0369bc374cf248b521b')
- version('3.5.6', sha256='30d2ff093988e74283e1abfee823292c6b59590796b9827e95ba4940b27d26f8')
- version('3.5.5', sha256='2f988db33913dcef17552fd1447b41afb89dbc26e3cdfc068ea6c62013a3a2a5')
- version('3.5.4', sha256='6ed87a8b6c758cc3299a8b433e8a9a9122054ad5bc8aad43299cff3a53d8ca44')
- version('3.5.3', sha256='d8890b84d773cd7059e597dbefa510340de8336ec9b9e9032bf030f19291565a')
- version('3.5.2', sha256='1524b840e42cf3b909e8f8df67c1724012c7dc7f9d076d4feef2d3eff031e8a0')
- version('3.5.1', sha256='687e067d9f391da645423c7eda8205bae9d35edc0c76ef5218dcbe4cc770d0d7')
- version('3.5.0', sha256='584e3d5a02692ca52fce505e68ecd77248a6f2c99adf9db144a39087336b0fe0')
- version('3.4.10', sha256='217757699249ab432571b381386d441e12b433100ab5f908051fcb7cced2539d')
- version('3.4.3', sha256='8b743f56e9e50bf0923b9e9c45dd927c071d7aa56cd46569d8818add8cf01147')
- version('3.3.6', sha256='0a58ad1f1def4ecc90b18b0c410a3a0e1a48cf7692c75d1f83d0af080e5d2034')
- version('3.2.6', sha256='fc1e41296e29d476f696303acae293ae7a2310f0f9d0d637905e722a3f16163e')
- version('3.1.5', sha256='d12dae6d06f52ef6bf1271db4d5b4d14b5dd39813e324314e72b648ef1bc0103')
- version('2.7.18', sha256='da3080e3b488f648a3d7a4560ddee895284c3380b11d6de75edb986526b9a814')
- version('2.7.17', sha256='f22059d09cdf9625e0a7284d24a13062044f5bf59d93a7f3382190dfa94cecde')
- version('2.7.16', sha256='01da813a3600876f03f46db11cc5c408175e99f03af2ba942ef324389a83bad5')
- version('2.7.15', sha256='18617d1f15a380a919d517630a9cd85ce17ea602f9bbdc58ddc672df4b0239db')
- version('2.7.14', sha256='304c9b202ea6fbd0a4a8e0ad3733715fbd4749f2204a9173a58ec53c32ea73e8')
- version('2.7.13', sha256='a4f05a0720ce0fd92626f0278b6b433eee9a6173ddf2bced7957dfb599a5ece1')
- version('2.7.12', sha256='3cb522d17463dfa69a155ab18cffa399b358c966c0363d6c8b5b3bf1384da4b6')
- version('2.7.11', sha256='82929b96fd6afc8da838b149107078c02fa1744b7e60999a8babbc0d3fa86fc6')
- version('2.7.10', sha256='eda8ce6eec03e74991abb5384170e7c65fcd7522e409b8e83d7e6372add0f12a')
- version('2.7.9', sha256='c8bba33e66ac3201dabdc556f0ea7cfe6ac11946ec32d357c4c6f9b018c12c5b')
- version('2.7.8', sha256='74d70b914da4487aa1d97222b29e9554d042f825f26cb2b93abd20fdda56b557')
+ version('3.6.15', sha256='54570b7e339e2cfd72b29c7e2fdb47c0b7b18b7412e61de5b463fc087c13b043', deprecated=True)
+ version('3.6.14', sha256='70064897bc434d6eae8bcc3e5678f282b5ea776d60e695da548a1219ccfd27a5', deprecated=True)
+ version('3.6.13', sha256='614950d3d54f6e78dac651b49c64cfe2ceefea5af3aff3371a9e4b27a53b2669', deprecated=True)
+ version('3.6.12', sha256='12dddbe52385a0f702fb8071e12dcc6b3cb2dde07cd8db3ed60e90d90ab78693', deprecated=True)
+ version('3.6.11', sha256='96621902f89746fffc22f39749c07da7c2917b232e72352e6837d41850f7b90c', deprecated=True)
+ version('3.6.10', sha256='7034dd7cba98d4f94c74f9edd7345bac71c8814c41672c64d9044fa2f96f334d', deprecated=True)
+ version('3.6.9', sha256='47fc92a1dcb946b9ed0abc311d3767b7215c54e655b17fd1d3f9b538195525aa', deprecated=True)
+ version('3.6.8', sha256='7f5b1f08b3b0a595387ef6c64c85b1b13b38abef0dd871835ee923262e4f32f0', deprecated=True)
+ version('3.6.7', sha256='b7c36f7ed8f7143b2c46153b7332db2227669f583ea0cce753facf549d1a4239', deprecated=True)
+ version('3.6.6', sha256='7d56dadf6c7d92a238702389e80cfe66fbfae73e584189ed6f89c75bbf3eda58', deprecated=True)
+ version('3.6.5', sha256='53a3e17d77cd15c5230192b6a8c1e031c07cd9f34a2f089a731c6f6bd343d5c6', deprecated=True)
+ version('3.6.4', sha256='7dc453e1a93c083388eb1a23a256862407f8234a96dc4fae0fc7682020227486', deprecated=True)
+ version('3.6.3', sha256='ab6193af1921b30f587b302fe385268510e80187ca83ca82d2bfe7ab544c6f91', deprecated=True)
+ version('3.6.2', sha256='7919489310a5f17f7acbab64d731e46dca0702874840dadce8bd4b2b3b8e7a82', deprecated=True)
+ version('3.6.1', sha256='aa50b0143df7c89ce91be020fe41382613a817354b33acdc6641b44f8ced3828', deprecated=True)
+ version('3.6.0', sha256='aa472515800d25a3739833f76ca3735d9f4b2fe77c3cb21f69275e0cce30cb2b', deprecated=True)
+ version('3.5.10', sha256='3496a0daf51913718a6f10e3eda51fa43634cb6151cb096f312d48bdbeff7d3a', deprecated=True)
+ version('3.5.9', sha256='67a1d4fc6e4540d6a092cadc488e533afa961b3c9becc74dc3d6b55cb56e0cc1', deprecated=True)
+ version('3.5.8', sha256='18c88dfd260147bc7247e6356010e5d4916dfbfc480f6434917f88e61228177a', deprecated=True)
+ version('3.5.7', sha256='542d94920a2a06a471a73b51614805ad65366af98145b0369bc374cf248b521b', deprecated=True)
+ version('3.5.6', sha256='30d2ff093988e74283e1abfee823292c6b59590796b9827e95ba4940b27d26f8', deprecated=True)
+ version('3.5.5', sha256='2f988db33913dcef17552fd1447b41afb89dbc26e3cdfc068ea6c62013a3a2a5', deprecated=True)
+ version('3.5.4', sha256='6ed87a8b6c758cc3299a8b433e8a9a9122054ad5bc8aad43299cff3a53d8ca44', deprecated=True)
+ version('3.5.3', sha256='d8890b84d773cd7059e597dbefa510340de8336ec9b9e9032bf030f19291565a', deprecated=True)
+ version('3.5.2', sha256='1524b840e42cf3b909e8f8df67c1724012c7dc7f9d076d4feef2d3eff031e8a0', deprecated=True)
+ version('3.5.1', sha256='687e067d9f391da645423c7eda8205bae9d35edc0c76ef5218dcbe4cc770d0d7', deprecated=True)
+ version('3.5.0', sha256='584e3d5a02692ca52fce505e68ecd77248a6f2c99adf9db144a39087336b0fe0', deprecated=True)
+ version('3.4.10', sha256='217757699249ab432571b381386d441e12b433100ab5f908051fcb7cced2539d', deprecated=True)
+ version('3.4.3', sha256='8b743f56e9e50bf0923b9e9c45dd927c071d7aa56cd46569d8818add8cf01147', deprecated=True)
+ version('3.3.6', sha256='0a58ad1f1def4ecc90b18b0c410a3a0e1a48cf7692c75d1f83d0af080e5d2034', deprecated=True)
+ version('3.2.6', sha256='fc1e41296e29d476f696303acae293ae7a2310f0f9d0d637905e722a3f16163e', deprecated=True)
+ version('3.1.5', sha256='d12dae6d06f52ef6bf1271db4d5b4d14b5dd39813e324314e72b648ef1bc0103', deprecated=True)
+ version('2.7.18', sha256='da3080e3b488f648a3d7a4560ddee895284c3380b11d6de75edb986526b9a814', deprecated=True)
+ version('2.7.17', sha256='f22059d09cdf9625e0a7284d24a13062044f5bf59d93a7f3382190dfa94cecde', deprecated=True)
+ version('2.7.16', sha256='01da813a3600876f03f46db11cc5c408175e99f03af2ba942ef324389a83bad5', deprecated=True)
+ version('2.7.15', sha256='18617d1f15a380a919d517630a9cd85ce17ea602f9bbdc58ddc672df4b0239db', deprecated=True)
+ version('2.7.14', sha256='304c9b202ea6fbd0a4a8e0ad3733715fbd4749f2204a9173a58ec53c32ea73e8', deprecated=True)
+ version('2.7.13', sha256='a4f05a0720ce0fd92626f0278b6b433eee9a6173ddf2bced7957dfb599a5ece1', deprecated=True)
+ version('2.7.12', sha256='3cb522d17463dfa69a155ab18cffa399b358c966c0363d6c8b5b3bf1384da4b6', deprecated=True)
+ version('2.7.11', sha256='82929b96fd6afc8da838b149107078c02fa1744b7e60999a8babbc0d3fa86fc6', deprecated=True)
+ version('2.7.10', sha256='eda8ce6eec03e74991abb5384170e7c65fcd7522e409b8e83d7e6372add0f12a', deprecated=True)
+ version('2.7.9', sha256='c8bba33e66ac3201dabdc556f0ea7cfe6ac11946ec32d357c4c6f9b018c12c5b', deprecated=True)
+ version('2.7.8', sha256='74d70b914da4487aa1d97222b29e9554d042f825f26cb2b93abd20fdda56b557', deprecated=True)
extendable = True
diff --git a/var/spack/repos/builtin/packages/qbox/package.py b/var/spack/repos/builtin/packages/qbox/package.py
index caf3870518..94b5410cda 100644
--- a/var/spack/repos/builtin/packages/qbox/package.py
+++ b/var/spack/repos/builtin/packages/qbox/package.py
@@ -14,29 +14,29 @@ class Qbox(MakefilePackage):
homepage = "http://qboxcode.org/"
url = "http://qboxcode.org/download/qbox-1.63.7.tgz"
- version('1.63.7', sha256='40acf4535c4dcab16066c218b1c2a083c238a1f54c43a1d2d4afcefb578086ed')
- version('1.63.5', sha256='fa6d0e41622690f14b7cd0c2735d3d8d703152eb2c51042cdd77a055926cd90a')
- version('1.63.4', sha256='829ae57e43ecb79f7dca8fb02aa70c85b0bbb68684a087d3cd1048b50fbc8e96')
- version('1.63.2', sha256='17873414fed5298b6a4b66ae659ea8348119238b36b532df8a7c8fca0ed4eada')
- version('1.63.0', sha256='8ad0727e4ebe709b2647a281756675e4840b3f29799f7169f79a9100c6538d31')
- version('1.62.3', sha256='e82df8307d038af75471f22d9449a5f5e2ad00bb34a89b1b2c25cc65da83c9b5')
- version('1.60.9', sha256='d82434031ab8214879274eb6f8674c6004b65ad5f9a07635101b82300af6d43c')
- version('1.60.4', sha256='7707a3bbecb05864e651d4f8885685299edd8f95fcd300dc401ff6652e85a351')
- version('1.60.0', sha256='802b531c7fe67d8fad27618911b2e158f7c69099677c0e08202dca24f81e10fd')
- version('1.58.0', sha256='662f55adedfe1154f8affd060b4f846cd37751f020fe854ef560aeb435fd0312')
- version('1.56.2', sha256='63df818e071cfc826645ee266a239a0cc00cea874d266f572fc20b1e2db7b351')
- version('1.54.4', sha256='8f556fde5307b96ed03612b339f793fc2933841f91555b6e7000cbb003709b7a')
- version('1.54.2', sha256='45ef811c05c9224baee87626d5a5bae91008a8b117df7e964c5976f27e54e9e9')
- version('1.52.3', sha256='9424eaf56dbf33394674f0be76aecf76637702d060e45c5edc95d872a165cd42')
- version('1.52.2', sha256='39d892f1bacd355d6ab4dbdd0ee4303ac6916fa9decf0e828f16003e61d59798')
- version('1.50.4', sha256='2babf332132005dc93f280b274c68e8e44ecd8e2d1cf21cc91e212f17f8644a8')
- version('1.50.2', sha256='0defe312319ac460b5b667eca982e4cd6a23750e5bdaa214d1c127ce2aba0a21')
- version('1.50.1', sha256='114363654d7059662b0f3269615d0af1514298f4f488889d8e7ef8f1c4b8898d')
- version('1.47.0', sha256='5c45aa8f6b2f774c04423c50b4e340dc35ca1deb2826ead8f1a508cd027974a9')
- version('1.45.3', sha256='986e82a69f90a96cccd1a192921024ffdcefb3b86df361946d88b12669156a80')
- version('1.45.1', sha256='3cea45743c0cd24cd02865c39a360c55030dab0f4b9b7b46e615af9b3b65c1da')
- version('1.45.0', sha256='cc722641bf3c3a172bdb396216a945f2830cc64de60d716b7054145ba52ab431')
- version('1.44.0', sha256='f29cf2a727235d4fa6bded7725a1a667888ab103278e995c46dd754654f112f1')
+ version('1.63.7', sha256='40acf4535c4dcab16066c218b1c2a083c238a1f54c43a1d2d4afcefb578086ed', deprecated=True)
+ version('1.63.5', sha256='fa6d0e41622690f14b7cd0c2735d3d8d703152eb2c51042cdd77a055926cd90a', deprecated=True)
+ version('1.63.4', sha256='829ae57e43ecb79f7dca8fb02aa70c85b0bbb68684a087d3cd1048b50fbc8e96', deprecated=True)
+ version('1.63.2', sha256='17873414fed5298b6a4b66ae659ea8348119238b36b532df8a7c8fca0ed4eada', deprecated=True)
+ version('1.63.0', sha256='8ad0727e4ebe709b2647a281756675e4840b3f29799f7169f79a9100c6538d31', deprecated=True)
+ version('1.62.3', sha256='e82df8307d038af75471f22d9449a5f5e2ad00bb34a89b1b2c25cc65da83c9b5', deprecated=True)
+ version('1.60.9', sha256='d82434031ab8214879274eb6f8674c6004b65ad5f9a07635101b82300af6d43c', deprecated=True)
+ version('1.60.4', sha256='7707a3bbecb05864e651d4f8885685299edd8f95fcd300dc401ff6652e85a351', deprecated=True)
+ version('1.60.0', sha256='802b531c7fe67d8fad27618911b2e158f7c69099677c0e08202dca24f81e10fd', deprecated=True)
+ version('1.58.0', sha256='662f55adedfe1154f8affd060b4f846cd37751f020fe854ef560aeb435fd0312', deprecated=True)
+ version('1.56.2', sha256='63df818e071cfc826645ee266a239a0cc00cea874d266f572fc20b1e2db7b351', deprecated=True)
+ version('1.54.4', sha256='8f556fde5307b96ed03612b339f793fc2933841f91555b6e7000cbb003709b7a', deprecated=True)
+ version('1.54.2', sha256='45ef811c05c9224baee87626d5a5bae91008a8b117df7e964c5976f27e54e9e9', deprecated=True)
+ version('1.52.3', sha256='9424eaf56dbf33394674f0be76aecf76637702d060e45c5edc95d872a165cd42', deprecated=True)
+ version('1.52.2', sha256='39d892f1bacd355d6ab4dbdd0ee4303ac6916fa9decf0e828f16003e61d59798', deprecated=True)
+ version('1.50.4', sha256='2babf332132005dc93f280b274c68e8e44ecd8e2d1cf21cc91e212f17f8644a8', deprecated=True)
+ version('1.50.2', sha256='0defe312319ac460b5b667eca982e4cd6a23750e5bdaa214d1c127ce2aba0a21', deprecated=True)
+ version('1.50.1', sha256='114363654d7059662b0f3269615d0af1514298f4f488889d8e7ef8f1c4b8898d', deprecated=True)
+ version('1.47.0', sha256='5c45aa8f6b2f774c04423c50b4e340dc35ca1deb2826ead8f1a508cd027974a9', deprecated=True)
+ version('1.45.3', sha256='986e82a69f90a96cccd1a192921024ffdcefb3b86df361946d88b12669156a80', deprecated=True)
+ version('1.45.1', sha256='3cea45743c0cd24cd02865c39a360c55030dab0f4b9b7b46e615af9b3b65c1da', deprecated=True)
+ version('1.45.0', sha256='cc722641bf3c3a172bdb396216a945f2830cc64de60d716b7054145ba52ab431', deprecated=True)
+ version('1.44.0', sha256='f29cf2a727235d4fa6bded7725a1a667888ab103278e995c46dd754654f112f1', deprecated=True)
depends_on('mpi')
depends_on('blas')
diff --git a/var/spack/repos/builtin/packages/qgis/package.py b/var/spack/repos/builtin/packages/qgis/package.py
index b50e4db81a..42a52d5301 100644
--- a/var/spack/repos/builtin/packages/qgis/package.py
+++ b/var/spack/repos/builtin/packages/qgis/package.py
@@ -90,7 +90,6 @@ class Qgis(CMakePackage):
depends_on('py-pyqt4', when='@2')
depends_on('py-pyqt5@5.3:', when='@3')
depends_on('py-requests', type=('build', 'run')) # TODO: is build dependency necessary?
- depends_on('python@2.7:2.8', type=('build', 'run'), when='@2')
depends_on('python@3.0.0:', type=('build', 'run'), when='@3')
depends_on('python@3.6:', type=('build', 'run'), when='@3.18:')
depends_on('python@3.7:', type=('build', 'run'), when='@3.20:')
diff --git a/var/spack/repos/builtin/packages/roctracer-dev/package.py b/var/spack/repos/builtin/packages/roctracer-dev/package.py
index 882da30854..4cb0eed22f 100644
--- a/var/spack/repos/builtin/packages/roctracer-dev/package.py
+++ b/var/spack/repos/builtin/packages/roctracer-dev/package.py
@@ -22,13 +22,13 @@ class RoctracerDev(CMakePackage):
version('4.3.1', sha256='88ada5f256a570792d1326a305663e94cf2c3b0cbd99f7e745326923882dafd2')
version('4.3.0', sha256='c3d9f408df8d4dc0e9c0026217b8c684f68e775da80b215fecb3cd24419ee6d3')
version('4.2.0', sha256='62a9c0cb1ba50b1c39a0636c886ac86e75a1a71cbf5fec05801517ceb0e67a37')
- version('4.1.0', sha256='5d93de4e92895b6eb5f9d098f5dbd182d33923bd9b2ab69cf5a1abbf91d70695')
- version('4.0.0', sha256='f47859a46173228b597c463eda850b870e810534af5efd5f2a746067ef04edee')
- version('3.10.0', sha256='ac4a1d059fc34377e906071fd0e56f5434a7e0e4ded9db8faf9217a115239dec')
- version('3.9.0', sha256='0678f9faf45058b16923948c66d77ba2c072283c975d167899caef969169b292')
- version('3.8.0', sha256='5154a84ce7568cd5dba756e9508c34ae9fc62f4b0b5731f93c2ad68b21537ed1')
- version('3.7.0', sha256='6fa5b771e990f09c242237ab334b9f01039ec7d54ccde993e719c5d6577d1518')
- version('3.5.0', sha256='7af5326c9ca695642b4265232ec12864a61fd6b6056aa7c4ecd9e19c817f209e')
+ version('4.1.0', sha256='5d93de4e92895b6eb5f9d098f5dbd182d33923bd9b2ab69cf5a1abbf91d70695', deprecated=True)
+ version('4.0.0', sha256='f47859a46173228b597c463eda850b870e810534af5efd5f2a746067ef04edee', deprecated=True)
+ version('3.10.0', sha256='ac4a1d059fc34377e906071fd0e56f5434a7e0e4ded9db8faf9217a115239dec', deprecated=True)
+ version('3.9.0', sha256='0678f9faf45058b16923948c66d77ba2c072283c975d167899caef969169b292', deprecated=True)
+ version('3.8.0', sha256='5154a84ce7568cd5dba756e9508c34ae9fc62f4b0b5731f93c2ad68b21537ed1', deprecated=True)
+ version('3.7.0', sha256='6fa5b771e990f09c242237ab334b9f01039ec7d54ccde993e719c5d6577d1518', deprecated=True)
+ version('3.5.0', sha256='7af5326c9ca695642b4265232ec12864a61fd6b6056aa7c4ecd9e19c817f209e', deprecated=True)
variant('build_type', default='Release', values=("Release", "Debug", "RelWithDebInfo"), description='CMake build type')
diff --git a/var/spack/repos/builtin/packages/rust/package.py b/var/spack/repos/builtin/packages/rust/package.py
index ab95bd8f3c..b5bda19b10 100644
--- a/var/spack/repos/builtin/packages/rust/package.py
+++ b/var/spack/repos/builtin/packages/rust/package.py
@@ -99,39 +99,39 @@ class Rust(Package):
version('1.45.1', sha256='ea53e6424e3d1fe56c6d77a00e72c5d594b509ec920c5a779a7b8e1dbd74219b')
version('1.44.1', sha256='7e2e64cb298dd5d5aea52eafe943ba0458fa82f2987fdcda1ff6f537b6f88473')
version('1.44.0', sha256='bf2df62317e533e84167c5bc7d4351a99fdab1f9cd6e6ba09f51996ad8561100')
- version('1.43.1', sha256='cde177b4a8c687da96f20de27630a1eb55c9d146a15e4c900d5c31cd3c3ac41d')
- version('1.43.0', sha256='75f6ac6c9da9f897f4634d5a07be4084692f7ccc2d2bb89337be86cfc18453a1')
- version('1.42.0', sha256='d2e8f931d16a0539faaaacd801e0d92c58df190269014b2360c6ab2a90ee3475')
- version('1.41.1', sha256='38c93d016e6d3e083aa15e8f65511d3b4983072c0218a529f5ee94dd1de84573')
- version('1.41.0', sha256='5546822c09944c4d847968e9b7b3d0e299f143f307c00fa40e84a99fabf8d74b')
- version('1.40.0', sha256='dd97005578defc10a482bff3e4e728350d2099c60ffcf1f5e189540c39a549ad')
- version('1.39.0', sha256='b4a1f6b6a93931f270691aba4fc85eee032fecda973e6b9c774cd06857609357')
- version('1.38.0', sha256='644263ca7c7106f8ee8fcde6bb16910d246b30668a74be20b8c7e0e9f4a52d80')
- version('1.37.0', sha256='120e7020d065499cc6b28759ff04153bfdc2ac9b5adeb252331a4eb87cbe38c3')
- version('1.36.0', sha256='04c4e4d7213d036d6aaed392841496d272146312c0290f728b7400fccd15bb1b')
- version('1.35.0', sha256='5a4d637a716bac18d085f44dd87ef48b32195f71b967d872d80280b38cff712d')
- version('1.34.2', sha256='c69a4a85a1c464368597df8878cb9e1121aae93e215616d45ad7d23af3052f56')
- version('1.34.1', sha256='b0c785264d17e1dac4598627c248a2d5e07dd39b6666d1881fcfc8e2cf4c40a7')
- version('1.34.0', sha256='7ac85acffd79dd3a7c44305d9eaabd1f1e7116e2e6e11e770e4bf5f92c0f1f59')
- version('1.33.0', sha256='5a01a8d7e65126f6079042831385e77485fa5c014bf217e9f3e4aff36a485d94')
- version('1.32.0', sha256='4c594c7712a0e7e8eae6526c464bf6ea1d82f77b4f61717c3fc28fb27ba2224a')
- version('1.31.1', sha256='91d2fc22f08d986adab7a54eb3a6a9b99e490f677d2d092e5b9e4e069c23686a')
- version('1.30.1', sha256='36a38902dbd9a3e1240d46ab0f2ca40d2fd07c2ab6508ed7970c6c4c036b5b29')
- version('1.30.0', sha256='cd0ba83fcca55b64c0c9f23130fe731dfc1882b73ae21bef96be8f2362c108ee')
- version('1.29.2', sha256='5088e796aa2e47478cdf41e7243fc5443fafab0a7c70a11423e57c80c04167c9')
- version('1.29.1', sha256='f1b0728b66ce6bce6d72bbe5ea9e3a24ea22a045665da2ed8fcdfad14f61a349')
- version('1.29.0', sha256='a4eb34ffd47f76afe2abd813f398512d5a19ef00989d37306217c9c9ec2f61e9')
- version('1.28.0', sha256='1d5a81729c6f23a0a23b584dd249e35abe9c6f7569cee967cc42b1758ecd6486')
- version('1.27.2', sha256='9a818c50cdb7880abeaa68b3d97792711e6c64c1cdfb6efdc23f75b8ced0e15d')
- version('1.27.1', sha256='2133beb01ddc3aa09eebc769dd884533c6cfb08ce684f042497e097068d733d1')
- version('1.27.0', sha256='2cb9803f690349c9fd429564d909ddd4676c68dc48b670b8ddf797c2613e2d21')
- version('1.26.2', sha256='fb9ecf304488c9b56600ab20cfd1937482057f7e5db7899fddb86e0774548700')
- version('1.26.1', sha256='70a7961bd8ec43b2c01e9896e90b0a06804a7fbe0a5c05acc7fd6fed19500df0')
- version('1.26.0', sha256='4fb09bc4e233b71dcbe08a37a3f38cabc32219745ec6a628b18a55a1232281dd')
- version('1.25.0', sha256='eef63a0aeea5147930a366aee78cbde248bb6e5c6868801bdf34849152965d2d')
- version('1.24.1', sha256='3ea53d45e8d2e9a41afb3340cf54b9745f845b552d802d607707cf04450761ef')
- version('1.24.0', sha256='bb8276f6044e877e447f29f566e4bbf820fa51fea2f912d59b73233ffd95639f')
- version('1.23.0', sha256='7464953871dcfdfa8afcc536916a686dd156a83339d8ec4d5cb4eb2fe146cb91')
+ version('1.43.1', sha256='cde177b4a8c687da96f20de27630a1eb55c9d146a15e4c900d5c31cd3c3ac41d', deprecated=True)
+ version('1.43.0', sha256='75f6ac6c9da9f897f4634d5a07be4084692f7ccc2d2bb89337be86cfc18453a1', deprecated=True)
+ version('1.42.0', sha256='d2e8f931d16a0539faaaacd801e0d92c58df190269014b2360c6ab2a90ee3475', deprecated=True)
+ version('1.41.1', sha256='38c93d016e6d3e083aa15e8f65511d3b4983072c0218a529f5ee94dd1de84573', deprecated=True)
+ version('1.41.0', sha256='5546822c09944c4d847968e9b7b3d0e299f143f307c00fa40e84a99fabf8d74b', deprecated=True)
+ version('1.40.0', sha256='dd97005578defc10a482bff3e4e728350d2099c60ffcf1f5e189540c39a549ad', deprecated=True)
+ version('1.39.0', sha256='b4a1f6b6a93931f270691aba4fc85eee032fecda973e6b9c774cd06857609357', deprecated=True)
+ version('1.38.0', sha256='644263ca7c7106f8ee8fcde6bb16910d246b30668a74be20b8c7e0e9f4a52d80', deprecated=True)
+ version('1.37.0', sha256='120e7020d065499cc6b28759ff04153bfdc2ac9b5adeb252331a4eb87cbe38c3', deprecated=True)
+ version('1.36.0', sha256='04c4e4d7213d036d6aaed392841496d272146312c0290f728b7400fccd15bb1b', deprecated=True)
+ version('1.35.0', sha256='5a4d637a716bac18d085f44dd87ef48b32195f71b967d872d80280b38cff712d', deprecated=True)
+ version('1.34.2', sha256='c69a4a85a1c464368597df8878cb9e1121aae93e215616d45ad7d23af3052f56', deprecated=True)
+ version('1.34.1', sha256='b0c785264d17e1dac4598627c248a2d5e07dd39b6666d1881fcfc8e2cf4c40a7', deprecated=True)
+ version('1.34.0', sha256='7ac85acffd79dd3a7c44305d9eaabd1f1e7116e2e6e11e770e4bf5f92c0f1f59', deprecated=True)
+ version('1.33.0', sha256='5a01a8d7e65126f6079042831385e77485fa5c014bf217e9f3e4aff36a485d94', deprecated=True)
+ version('1.32.0', sha256='4c594c7712a0e7e8eae6526c464bf6ea1d82f77b4f61717c3fc28fb27ba2224a', deprecated=True)
+ version('1.31.1', sha256='91d2fc22f08d986adab7a54eb3a6a9b99e490f677d2d092e5b9e4e069c23686a', deprecated=True)
+ version('1.30.1', sha256='36a38902dbd9a3e1240d46ab0f2ca40d2fd07c2ab6508ed7970c6c4c036b5b29', deprecated=True)
+ version('1.30.0', sha256='cd0ba83fcca55b64c0c9f23130fe731dfc1882b73ae21bef96be8f2362c108ee', deprecated=True)
+ version('1.29.2', sha256='5088e796aa2e47478cdf41e7243fc5443fafab0a7c70a11423e57c80c04167c9', deprecated=True)
+ version('1.29.1', sha256='f1b0728b66ce6bce6d72bbe5ea9e3a24ea22a045665da2ed8fcdfad14f61a349', deprecated=True)
+ version('1.29.0', sha256='a4eb34ffd47f76afe2abd813f398512d5a19ef00989d37306217c9c9ec2f61e9', deprecated=True)
+ version('1.28.0', sha256='1d5a81729c6f23a0a23b584dd249e35abe9c6f7569cee967cc42b1758ecd6486', deprecated=True)
+ version('1.27.2', sha256='9a818c50cdb7880abeaa68b3d97792711e6c64c1cdfb6efdc23f75b8ced0e15d', deprecated=True)
+ version('1.27.1', sha256='2133beb01ddc3aa09eebc769dd884533c6cfb08ce684f042497e097068d733d1', deprecated=True)
+ version('1.27.0', sha256='2cb9803f690349c9fd429564d909ddd4676c68dc48b670b8ddf797c2613e2d21', deprecated=True)
+ version('1.26.2', sha256='fb9ecf304488c9b56600ab20cfd1937482057f7e5db7899fddb86e0774548700', deprecated=True)
+ version('1.26.1', sha256='70a7961bd8ec43b2c01e9896e90b0a06804a7fbe0a5c05acc7fd6fed19500df0', deprecated=True)
+ version('1.26.0', sha256='4fb09bc4e233b71dcbe08a37a3f38cabc32219745ec6a628b18a55a1232281dd', deprecated=True)
+ version('1.25.0', sha256='eef63a0aeea5147930a366aee78cbde248bb6e5c6868801bdf34849152965d2d', deprecated=True)
+ version('1.24.1', sha256='3ea53d45e8d2e9a41afb3340cf54b9745f845b552d802d607707cf04450761ef', deprecated=True)
+ version('1.24.0', sha256='bb8276f6044e877e447f29f566e4bbf820fa51fea2f912d59b73233ffd95639f', deprecated=True)
+ version('1.23.0', sha256='7464953871dcfdfa8afcc536916a686dd156a83339d8ec4d5cb4eb2fe146cb91', deprecated=True)
# The Rust bootstrapping process requires a bootstrapping compiler. The
# easiest way to do this is to download the binary distribution of the
diff --git a/var/spack/repos/builtin/packages/scons/package.py b/var/spack/repos/builtin/packages/scons/package.py
index 9c62b56606..2f425b568f 100644
--- a/var/spack/repos/builtin/packages/scons/package.py
+++ b/var/spack/repos/builtin/packages/scons/package.py
@@ -18,8 +18,8 @@ class Scons(PythonPackage):
version('3.0.5', sha256='e95eaae17d9e490cf12cd37f091a6cbee8a628b5c8dbd3cab1f348f602f46462')
version('3.0.4', sha256='72c0b56db84f40d3558f351918a0ab98cb4345e8696e879d3e271f4df4a5913c')
version('3.0.1', sha256='24475e38d39c19683bc88054524df018fe6949d70fbd4c69e298d39a0269f173')
- version('2.5.1', sha256='c8de85fc02ed1a687b1f2ac791eaa0c1707b4382a204f17d782b5b111b9fdf07')
- version('2.5.0', sha256='01f1b3d6023516a8e1b5e77799e5a82a23b32953b1102d339059ffeca8600493')
+ version('2.5.1', sha256='c8de85fc02ed1a687b1f2ac791eaa0c1707b4382a204f17d782b5b111b9fdf07', deprecated=True)
+ version('2.5.0', sha256='01f1b3d6023516a8e1b5e77799e5a82a23b32953b1102d339059ffeca8600493', deprecated=True)
# Python 3 support was added in SCons 3.0.0
depends_on('python@:2', when='@:2', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/shiny-server/package.py b/var/spack/repos/builtin/packages/shiny-server/package.py
index 0f575c53a1..7cebb7f8aa 100644
--- a/var/spack/repos/builtin/packages/shiny-server/package.py
+++ b/var/spack/repos/builtin/packages/shiny-server/package.py
@@ -23,7 +23,7 @@ class ShinyServer(CMakePackage):
homepage = "https://www.rstudio.com/products/shiny/shiny-server/"
url = "https://github.com/rstudio/shiny-server/archive/v1.5.3.838.tar.gz"
- version('1.5.3.838', sha256='6fd1b12cd1cbe5c64cacbec4accefe955353f9c675e5feff809c0e911a382141')
+ version('1.5.3.838', sha256='6fd1b12cd1cbe5c64cacbec4accefe955353f9c675e5feff809c0e911a382141', deprecated=True)
depends_on('python@:2.8') # docs say: "Really. 3.x will not work"
depends_on('cmake@2.8.10:', type='build')
diff --git a/var/spack/repos/builtin/packages/slepc/package.py b/var/spack/repos/builtin/packages/slepc/package.py
index df705897d7..d3cdf4918e 100644
--- a/var/spack/repos/builtin/packages/slepc/package.py
+++ b/var/spack/repos/builtin/packages/slepc/package.py
@@ -41,19 +41,19 @@ class Slepc(Package, CudaPackage, ROCmPackage):
version('3.11.2', sha256='cd6a73ac0c9f689c12f2987000a7a28fa7df53fdc069fb59a2bb148699e741dd')
version('3.11.1', sha256='4816070d4ecfeea6212c6944cee22dc7b4763df1eaf6ab7847cc5ac5132608fb')
version('3.11.0', sha256='bf29043c311fe2c549a25e2b0835095723a3eebc1dff288a233b32913b5762a2')
- version('3.10.2', sha256='0594972293f6586458a54b7c1e1121b311a9c9449060355d52bb3bf09ad6812b')
- version('3.10.1', sha256='f64787c8c2ab3d2f6db3c67d2bfe6ee84f741ce3dfde1d2f8221e131820a12a1')
- version('3.10.0', sha256='069d7a579995e0be1567c5bc869251e29c00044369a786933ca3040149d0412a')
- version('3.9.2', sha256='247585b3f8c10bf50b9464cb8ef7b5f22bead6f96524384897a37ec4146eb03e')
- version('3.9.1', sha256='e174ea7c127d9161eef976b0288f0c56d443a58d6ab2dc8af1e8bd66f156ce17')
- version('3.9.0', sha256='1f3930db56b4065aaf214ea758ddff1a70bf19d45544cbdfd19d2787db4bfe0b')
- version('3.8.2', sha256='1e7d20d20eb26da307d36017461fe4a55f40e947e232739179dbe6412e22ed13')
- version('3.8.0', sha256='c58ccc4e852d1da01112466c48efa41f0839649f3a265925788237d76cd3d963')
- version('3.7.4', sha256='2fb782844e3bc265a8d181c3c3e2632a4ca073111c874c654f1365d33ca2eb8a')
- version('3.7.3', sha256='3ef9bcc645a10c1779d56b3500472ceb66df692e389d635087d30e7c46424df9')
- version('3.7.1', sha256='670216f263e3074b21e0623c01bc0f562fdc0bffcd7bd42dd5d8edbe73a532c2')
- version('3.6.3', sha256='384939d009546db37bc05ed81260c8b5ba451093bf891391d32eb7109ccff876')
- version('3.6.2', sha256='2ab4311bed26ccf7771818665991b2ea3a9b15f97e29fd13911ab1293e8e65df')
+ version('3.10.2', sha256='0594972293f6586458a54b7c1e1121b311a9c9449060355d52bb3bf09ad6812b', deprecated=True)
+ version('3.10.1', sha256='f64787c8c2ab3d2f6db3c67d2bfe6ee84f741ce3dfde1d2f8221e131820a12a1', deprecated=True)
+ version('3.10.0', sha256='069d7a579995e0be1567c5bc869251e29c00044369a786933ca3040149d0412a', deprecated=True)
+ version('3.9.2', sha256='247585b3f8c10bf50b9464cb8ef7b5f22bead6f96524384897a37ec4146eb03e', deprecated=True)
+ version('3.9.1', sha256='e174ea7c127d9161eef976b0288f0c56d443a58d6ab2dc8af1e8bd66f156ce17', deprecated=True)
+ version('3.9.0', sha256='1f3930db56b4065aaf214ea758ddff1a70bf19d45544cbdfd19d2787db4bfe0b', deprecated=True)
+ version('3.8.2', sha256='1e7d20d20eb26da307d36017461fe4a55f40e947e232739179dbe6412e22ed13', deprecated=True)
+ version('3.8.0', sha256='c58ccc4e852d1da01112466c48efa41f0839649f3a265925788237d76cd3d963', deprecated=True)
+ version('3.7.4', sha256='2fb782844e3bc265a8d181c3c3e2632a4ca073111c874c654f1365d33ca2eb8a', deprecated=True)
+ version('3.7.3', sha256='3ef9bcc645a10c1779d56b3500472ceb66df692e389d635087d30e7c46424df9', deprecated=True)
+ version('3.7.1', sha256='670216f263e3074b21e0623c01bc0f562fdc0bffcd7bd42dd5d8edbe73a532c2', deprecated=True)
+ version('3.6.3', sha256='384939d009546db37bc05ed81260c8b5ba451093bf891391d32eb7109ccff876', deprecated=True)
+ version('3.6.2', sha256='2ab4311bed26ccf7771818665991b2ea3a9b15f97e29fd13911ab1293e8e65df', deprecated=True)
variant('arpack', default=True, description='Enables Arpack wrappers')
variant('blopex', default=False, description='Enables BLOPEX wrappers')
diff --git a/var/spack/repos/builtin/packages/slider/package.py b/var/spack/repos/builtin/packages/slider/package.py
index 930e51da4d..e4c89f5ea2 100644
--- a/var/spack/repos/builtin/packages/slider/package.py
+++ b/var/spack/repos/builtin/packages/slider/package.py
@@ -13,9 +13,9 @@ class Slider(MavenPackage):
list_url = "http://archive.apache.org/dist/incubator/slider"
list_depth = 1
- version('0.92.0', sha256='485f02f4f9f0b270017717c9471b83b0d77d005d25261b741fb381791ce838b9')
- version('0.91.0', sha256='212a5cde6de60060c9a081f553d66940b70af4bccb469072febb554c4005bcef')
- version('0.90.2', sha256='410941f772d29f564c4bb90ca0631f29dc895f509048cb6052f8695302e3f944')
+ version('0.92.0', sha256='485f02f4f9f0b270017717c9471b83b0d77d005d25261b741fb381791ce838b9', deprecated=True)
+ version('0.91.0', sha256='212a5cde6de60060c9a081f553d66940b70af4bccb469072febb554c4005bcef', deprecated=True)
+ version('0.90.2', sha256='410941f772d29f564c4bb90ca0631f29dc895f509048cb6052f8695302e3f944', deprecated=True)
depends_on('java@8', type=('build', 'run'))
depends_on('python@2.7.0:2.7', type='run')
diff --git a/var/spack/repos/builtin/packages/stat/package.py b/var/spack/repos/builtin/packages/stat/package.py
index 8bb8e2895e..a047928a09 100644
--- a/var/spack/repos/builtin/packages/stat/package.py
+++ b/var/spack/repos/builtin/packages/stat/package.py
@@ -22,7 +22,7 @@ class Stat(AutotoolsPackage):
version('4.0.1', sha256='ae3fbd6946003fb16233d82d40285780a9a802da5fe30d09adb8a8b2a2cc4ad6',
url='https://github.com/LLNL/STAT/files/2489327/stat-4.0.1.tar.gz')
version('4.0.0', sha256='1c4f62686645f6dc1d9ef890acc9c2839c150789dc220718775878feb41bdabf',
- url='https://github.com/LLNL/STAT/releases/download/v4.0.0/stat-4.0.0.tar.gz')
+ url='https://github.com/LLNL/STAT/releases/download/v4.0.0/stat-4.0.0.tar.gz', deprecated=True)
version('3.0.1', sha256='540916ffb92026ca7aa825a2320095a89b9b4fd3426ee7657b44ac710618947e',
url='https://github.com/LLNL/STAT/files/911503/stat-3.0.1.zip',
deprecated=True)
diff --git a/var/spack/repos/builtin/packages/strelka/package.py b/var/spack/repos/builtin/packages/strelka/package.py
index 3b1806c8d5..eaddd9476b 100644
--- a/var/spack/repos/builtin/packages/strelka/package.py
+++ b/var/spack/repos/builtin/packages/strelka/package.py
@@ -13,20 +13,20 @@ class Strelka(CMakePackage):
homepage = "https://github.com/Illumina/strelka"
url = "https://github.com/Illumina/strelka/releases/download/v2.8.2/strelka-2.8.2.release_src.tar.bz2"
- version('2.9.10', sha256='45e78efec6e5272697f1d0a95851c7ae0d623dc8f93846e11fe37f15da9f1e30')
- version('2.9.9', sha256='547b42ab983ba38a6459d47e8546daa6d571f370933542f02f3f3bd9abd13c16')
- version('2.9.8', sha256='dc12b894e1267a63f7049bc01402b284db1681c82fb2cac313324a6530cbc4ad')
- version('2.9.7', sha256='9b0db7cc32662488ea53931e1afccff3e7967cd3b492cc93e66a8115a1f4d016')
- version('2.9.6', sha256='db6fe97add75309954bb46f9c53e1c722d8a8d66adc976ff7e2e9788b7ff97fa')
- version('2.9.5', sha256='b3d70129508226280f4de9c328f3cd751e4cedba4383b0264a16ac37f73b1412')
- version('2.9.4', sha256='d06088bb2b033cfcda7263fe8fcf915cba10c77df963f116f64a57cd2682803f')
- version('2.9.3', sha256='9f2cd17b5326f09c499fb01d32d1bb61dec9a97c70199f685824e89bfcad2dee')
- version('2.9.2', sha256='47642c3138e126efaab485a40a9a954abfed34f8c88b107a46dbd64e3f1778a5')
- version('2.9.1', sha256='963e1935389d8777bcdfe77f6126a34a0f8ea5cc27a280e41ba67e9df88cf990')
- version('2.9.0', sha256='25b4dbd270f541bc6a172d12448c209586e9f00e86f56cfce98d1d5612bb4fb8')
- version('2.8.4', sha256='523fb89e7ba7717a61548fcd45b0ccd5c850a8f2b034ab1cf34ec74efb7260c2')
- version('2.8.3', sha256='4f6f8f433a3e1d7a59243bd75bc73dcfb309c1dacc79fe56fafd0ad96e856415')
- version('2.8.2', sha256='27415f7c14f92e0a6b80416283a0707daed121b8a3854196872981d132f1496b')
+ version('2.9.10', sha256='45e78efec6e5272697f1d0a95851c7ae0d623dc8f93846e11fe37f15da9f1e30', deprecated=True)
+ version('2.9.9', sha256='547b42ab983ba38a6459d47e8546daa6d571f370933542f02f3f3bd9abd13c16', deprecated=True)
+ version('2.9.8', sha256='dc12b894e1267a63f7049bc01402b284db1681c82fb2cac313324a6530cbc4ad', deprecated=True)
+ version('2.9.7', sha256='9b0db7cc32662488ea53931e1afccff3e7967cd3b492cc93e66a8115a1f4d016', deprecated=True)
+ version('2.9.6', sha256='db6fe97add75309954bb46f9c53e1c722d8a8d66adc976ff7e2e9788b7ff97fa', deprecated=True)
+ version('2.9.5', sha256='b3d70129508226280f4de9c328f3cd751e4cedba4383b0264a16ac37f73b1412', deprecated=True)
+ version('2.9.4', sha256='d06088bb2b033cfcda7263fe8fcf915cba10c77df963f116f64a57cd2682803f', deprecated=True)
+ version('2.9.3', sha256='9f2cd17b5326f09c499fb01d32d1bb61dec9a97c70199f685824e89bfcad2dee', deprecated=True)
+ version('2.9.2', sha256='47642c3138e126efaab485a40a9a954abfed34f8c88b107a46dbd64e3f1778a5', deprecated=True)
+ version('2.9.1', sha256='963e1935389d8777bcdfe77f6126a34a0f8ea5cc27a280e41ba67e9df88cf990', deprecated=True)
+ version('2.9.0', sha256='25b4dbd270f541bc6a172d12448c209586e9f00e86f56cfce98d1d5612bb4fb8', deprecated=True)
+ version('2.8.4', sha256='523fb89e7ba7717a61548fcd45b0ccd5c850a8f2b034ab1cf34ec74efb7260c2', deprecated=True)
+ version('2.8.3', sha256='4f6f8f433a3e1d7a59243bd75bc73dcfb309c1dacc79fe56fafd0ad96e856415', deprecated=True)
+ version('2.8.2', sha256='27415f7c14f92e0a6b80416283a0707daed121b8a3854196872981d132f1496b', deprecated=True)
depends_on('python@2.4:2.7')
depends_on('zlib')
diff --git a/var/spack/repos/builtin/packages/tppred/package.py b/var/spack/repos/builtin/packages/tppred/package.py
index 7a2a314c8a..3e24ae27a7 100644
--- a/var/spack/repos/builtin/packages/tppred/package.py
+++ b/var/spack/repos/builtin/packages/tppred/package.py
@@ -13,7 +13,7 @@ class Tppred(Package):
homepage = "https://tppred2.biocomp.unibo.it/tppred2/default/software"
url = "http://biocomp.unibo.it/savojard/tppred2.tar.gz"
- version('2.0', sha256='0e180d5ce1f0bccfdbc3dbf9981b3fbe2101c85491c58c58c88856861688a4f5')
+ version('2.0', sha256='0e180d5ce1f0bccfdbc3dbf9981b3fbe2101c85491c58c58c88856861688a4f5', deprecated=True)
depends_on('python@2.7:2', type='run')
depends_on('py-scikit-learn@0.13.1', type='run')
diff --git a/var/spack/repos/builtin/packages/tut/package.py b/var/spack/repos/builtin/packages/tut/package.py
index 00b2b76fed..8acc2c2ee7 100644
--- a/var/spack/repos/builtin/packages/tut/package.py
+++ b/var/spack/repos/builtin/packages/tut/package.py
@@ -12,7 +12,7 @@ class Tut(WafPackage):
homepage = "https://mrzechonek.github.io/tut-framework/"
url = "https://github.com/mrzechonek/tut-framework/tarball/2016-12-19"
- version('2016-12-19', sha256='9fc0325d6db9709cc5213773bf4fd84f2a95154f18f7f8a553e1e52392e15691')
+ version('2016-12-19', sha256='9fc0325d6db9709cc5213773bf4fd84f2a95154f18f7f8a553e1e52392e15691', deprecated=True)
patch('python3-octal.patch', when='@2016-12-19')
diff --git a/var/spack/repos/builtin/packages/vapor/package.py b/var/spack/repos/builtin/packages/vapor/package.py
index 570dc637d8..08e3937d4d 100644
--- a/var/spack/repos/builtin/packages/vapor/package.py
+++ b/var/spack/repos/builtin/packages/vapor/package.py
@@ -18,8 +18,8 @@ class Vapor(CMakePackage):
maintainers = ['RemiLacroix-IDRIS']
- version('3.5.0', sha256='f055d488c6f5bda5174a63990b6b6600037f7ce73ac68d39ad0f371d67f2d685')
- version('3.3.0', sha256='41c13d206cfcfa4146155d524106de2eb74e7b59af1e2f8c1c3056c15d508a93')
+ version('3.5.0', sha256='f055d488c6f5bda5174a63990b6b6600037f7ce73ac68d39ad0f371d67f2d685', deprecated=True)
+ version('3.3.0', sha256='41c13d206cfcfa4146155d524106de2eb74e7b59af1e2f8c1c3056c15d508a93', deprecated=True)
depends_on('gl') # GUI
depends_on('qt@5.13.2:+opengl+dbus') # GUI
diff --git a/var/spack/repos/builtin/packages/verrou/package.py b/var/spack/repos/builtin/packages/verrou/package.py
index 2a9d0aea0c..dc70404117 100644
--- a/var/spack/repos/builtin/packages/verrou/package.py
+++ b/var/spack/repos/builtin/packages/verrou/package.py
@@ -30,8 +30,8 @@ class Verrou(AutotoolsPackage):
version('develop', branch='master')
version('2.2.0', sha256='d4ea3d19f0c61329723907b5b145d85776bb702643c1605a31f584484d2c5efc')
version('2.1.0', sha256='b1ba49f84aebab15b8ab5649946c9c31b53ad1499f6ffb681c98db41ed28566d')
- version('2.0.0', sha256='798df6e426ec57646a2a626d756b72f0171647ae5b07c982952dae2d71e26045')
- version('1.1.0', sha256='b5105f61c65680f31551199cd143b2e15f412c34c821537998a7165e315dde2d')
+ version('2.0.0', sha256='798df6e426ec57646a2a626d756b72f0171647ae5b07c982952dae2d71e26045', deprecated=True)
+ version('1.1.0', sha256='b5105f61c65680f31551199cd143b2e15f412c34c821537998a7165e315dde2d', deprecated=True)
# The server is sometimes a bit slow to respond
timeout = {'timeout': 60}