diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/redundans/package.py | 5 |
1 files changed, 5 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/redundans/package.py b/var/spack/repos/builtin/packages/redundans/package.py index ea3bea2c17..2364ce082b 100644 --- a/var/spack/repos/builtin/packages/redundans/package.py +++ b/var/spack/repos/builtin/packages/redundans/package.py @@ -46,7 +46,12 @@ class Redundans(Package): depends_on('snap-berkeley@1.0beta.18:', type=('build', 'run')) def install(self, spec, prefix): + sspace_location = join_path(spec['sspace-standard'].prefix, + 'SSPACE_Standard_v3.0.pl') mkdirp(prefix.bin) + filter_file(r'sspacebin = os.path.join(.*)$', + 'sspacebin = \'' + sspace_location + '\'', + 'redundans.py') install('redundans.py', prefix.bin) with working_dir('bin'): install('fasta2homozygous.py', prefix.bin) |