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| -rw-r--r-- | var/spack/repos/builtin/packages/sortmerna/package.py | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/sortmerna/package.py b/var/spack/repos/builtin/packages/sortmerna/package.py new file mode 100644 index 0000000000..fbf0f44ed8 --- /dev/null +++ b/var/spack/repos/builtin/packages/sortmerna/package.py @@ -0,0 +1,44 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Sortmerna(CMakePackage): + """SortMeRNA is a program tool for filtering, mapping and OTU-picking NGS + reads in metatranscriptomic and metagenomic data""" + + homepage = "https://github.com/biocore/sortmerna" + url = "https://github.com/biocore/sortmerna" + + version('2017-07-13', git='https://github.com/biocore/sortmerna.git', commit='8bde6fa113a5d99a23ae81b48eeea6760e966094') + + depends_on('zlib') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + with working_dir(join_path('spack-build', 'src', 'indexdb')): + install('indexdb', prefix.bin) + with working_dir(join_path('spack-build', 'src', 'sortmerna')): + install('sortmerna', prefix.bin) |