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-rw-r--r--var/spack/repos/builtin/packages/fastqc/package.py11
1 files changed, 3 insertions, 8 deletions
diff --git a/var/spack/repos/builtin/packages/fastqc/package.py b/var/spack/repos/builtin/packages/fastqc/package.py
index ff79d7b0c5..247c00dab7 100644
--- a/var/spack/repos/builtin/packages/fastqc/package.py
+++ b/var/spack/repos/builtin/packages/fastqc/package.py
@@ -22,6 +22,9 @@ class Fastqc(Package):
patch("fastqc.patch", level=0)
+ def patch(self):
+ filter_file("/usr/bin/perl", self.spec["perl"].command.path, "fastqc", backup=False)
+
def install(self, spec, prefix):
mkdir(prefix.bin)
mkdir(prefix.lib)
@@ -32,11 +35,3 @@ class Fastqc(Package):
install_tree(d, join_path(prefix.lib, d))
chmod = which("chmod")
chmod("+x", prefix.bin.fastqc)
-
- # In theory the 'run' dependency on 'jdk' above should take
- # care of this for me. In practice, it does not.
- def setup_run_environment(self, env):
- """Add <prefix> to the path; the package has a script at the
- top level.
- """
- env.prepend_path("PATH", self.spec["java"].prefix.bin)