diff options
Diffstat (limited to 'lib/spack/docs/tutorial_basics.rst')
| -rw-r--r-- | lib/spack/docs/tutorial_basics.rst | 1419 |
1 files changed, 704 insertions, 715 deletions
diff --git a/lib/spack/docs/tutorial_basics.rst b/lib/spack/docs/tutorial_basics.rst index d74159d7f6..50c072c08e 100644 --- a/lib/spack/docs/tutorial_basics.rst +++ b/lib/spack/docs/tutorial_basics.rst @@ -1,3 +1,8 @@ +.. Copyright 2013-2018 Lawrence Livermore National Security, LLC and other + Spack Project Developers. See the top-level COPYRIGHT file for details. + + SPDX-License-Identifier: (Apache-2.0 OR MIT) + .. _basics-tutorial: ========================================= @@ -23,22 +28,24 @@ Installing Spack ---------------- Spack works out of the box. Simply clone spack and get going. We will -clone Spack and immediately checkout the most recent release, v0.11.0. +clone Spack and immediately checkout the most recent release, v0.12. .. code-block:: console $ git clone https://github.com/spack/spack + git clone https://github.com/spack/spack Cloning into 'spack'... - remote: Counting objects: 94561, done. - remote: Compressing objects: 100% (121/121), done. - remote: Total 94561 (delta 91), reused 121 (delta 48), pack-reused 94368 - Receiving objects: 100% (94561/94561), 32.44 MiB | 31.88 MiB/s, done. - Resolving deltas: 100% (44914/44914), done. + remote: Enumerating objects: 68, done. + remote: Counting objects: 100% (68/68), done. + remote: Compressing objects: 100% (56/56), done. + remote: Total 135389 (delta 40), reused 16 (delta 9), pack-reused 135321 + Receiving objects: 100% (135389/135389), 47.31 MiB | 1.01 MiB/s, done. + Resolving deltas: 100% (64414/64414), done. Checking connectivity... done. $ cd spack - $ git checkout releases/v0.11.0 - Branch releases/v0.11.0 set up to track remote branch releases/v0.11.0 from origin. - Switched to a new branch 'releases/v0.11.0' + $ git checkout releases/v0.12 + Branch releases/v0.12 set up to track remote branch releases/v0.12 from origin. + Switched to a new branch 'releases/v0.12' Next add Spack to your path. Spack has some nice command line integration tools, so instead of simply appending to your ``PATH`` @@ -59,10 +66,10 @@ The ``spack list`` command shows available packages. .. code-block:: console $ spack list - ==> 2177 packages. - abinit libepoxy py-html5lib r-ncdf4 - abyss libevent py-httpbin r-network - ack libevpath py-hypothesis r-networkd3abinit + ==> 2907 packages. + abinit libgpuarray py-espresso r-mlrmbo + abyss libgridxc py-espressopp r-mmwrweek + accfft libgtextutils py-et-xmlfile r-mnormt ... The ``spack list`` command can also take a query string. Spack @@ -72,10 +79,10 @@ we can view all available python packages. .. code-block:: console $ spack list py- - ==> 356 packages. - py-3to2 py-functools32 py-numpydoc py-pywavelets - py-4suite-xml py-future py-olefile py-pyyaml - py-abipy py-futures py-ont-fast5-api py-qtawesome + ==> 479 packages. + lumpy-sv py-funcsigs py-numpydoc py-utililib + perl-file-copy-recursive py-functools32 py-olefile py-pywavelets + py-3to2 py-future py-ont-fast5-api py-pyyaml ... ------------------- @@ -89,43 +96,42 @@ software, simply type ``spack install <package_name>``. $ spack install zlib ==> Installing zlib - ==> Fetching file:///home/ubuntu/becker/buildcache/zlib/zlib-1.2.11.tar.gz - curl: (37) Couldn't open file /home/ubuntu/becker/buildcache/zlib/zlib-1.2.11.tar.gz - ==> Fetching from file:///home/ubuntu/becker/buildcache/zlib/zlib-1.2.11.tar.gz failed. + ==> Searching for binary cache of zlib + ==> Warning: No Spack mirrors are currently configured + ==> No binary for zlib found: installing from source ==> Fetching http://zlib.net/fossils/zlib-1.2.11.tar.gz ######################################################################## 100.0% - ==> Staging archive: /home/ubuntu/test/spack/var/spack/stage/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb/zlib-1.2.11.tar.gz - ==> Created stage in /home/ubuntu/test/spack/var/spack/stage/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + ==> Staging archive: /home/spack1/spack/var/spack/stage/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb/zlib-1.2.11.tar.gz + ==> Created stage in /home/spack1/spack/var/spack/stage/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb ==> No patches needed for zlib ==> Building zlib [Package] ==> Executing phase: 'install' ==> Successfully installed zlib - Fetch: 0.58s. Build: 1.15s. Total: 1.73s. - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + Fetch: 3.27s. Build: 2.18s. Total: 5.44s. + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb Spack can install software either from source or from a binary cache. Packages in the binary cache are signed with GPG for security. For the tutorial we have prepared a binary cache so you don't have to wait on slow compilation from source. To be able to -install from the binary cache, we will need to trust the GPG key that -the binary cache was prepared with. +install from the binary cache, we will need to configure Spack with +the location of the binary cache and trust the GPG key that the binary +cache was signed with. .. code-block:: console - $ spack gpg trust ~/public.key - gpg: keybox '/home/ubuntu/test/spack/opt/spack/gpg/pubring.kbx' created - gpg: /home/ubuntu/test/spack/opt/spack/gpg/trustdb.gpg: trustdb created + $ spack mirror add tutorial /mirror + $ spack gpg trust /mirror/public.key + gpg: keybox '/home/spack1/spack/opt/spack/gpg/pubring.kbx' created + gpg: /home/spack1/spack/opt/spack/gpg/trustdb.gpg: trustdb created gpg: key 3B7C69B2: public key "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" imported gpg: Total number processed: 1 gpg: imported: 1 -The AWS instances and Docker images we use for the tutorial already -have configuration files in place so that Spack knows where to look -for binary packages (and that's the only change we've made). You'll -learn more about configuring Spack later in the tutorial, but for now -you will be able to install the rest of the packages in the tutorial -from a binary cache by specifying ``spack install --use-cache -<package_name>``. This will install the binary cached version if it +You'll learn more about configuring Spack later in the tutorial, but +for now you will be able to install the rest of the packages in the +tutorial from a binary cache using the same ``spack install`` +command. By default this will install the binary cached version if it exists and fall back on installing from source. Spack's spec syntax is the interface by which we can request specific @@ -134,24 +140,28 @@ compilers. .. code-block:: console - $ spack install --use-cache zlib %clang - ... - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-4.7-libsigsegv-2.11-eaqxu5mka32jpjif32rttiwebimrr2kb.spec.yaml + $ spack install zlib %clang + ==> Installing zlib + ==> Searching for binary cache of zlib + ==> Finding buildcaches in /mirror/build_cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64-gcc-7.2.0-texinfo-6.5-cuqnfgfhhmudqp5f7upmld6ax7pratzw.spec.yaml + ######################################################################## 100.0% + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64-gcc-4.7-zlib-1.2.11-bq2wtdxakpjytk2tjr7qu23i4py2fi2r.spec.yaml ######################################################################## 100.0% - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr.spec.yaml + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-dyninst-9.3.2-bu6s2jzievsjkwtcnrtimc5b625j5omf.spec.yaml ######################################################################## 100.0% + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64-gcc-7.2.0-openmpi-3.1.3-do5xfer2whhk7gc26atgs3ozr3ljbvs4.spec.yaml + ... ==> Installing zlib from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.11/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-zlib-1.2.11-4pt75q7qq6lygf3hgnona4lyc2uwedul.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.11/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-zlib-1.2.11-4pt75q7qq6lygf3hgnona4lyc2uwedul.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 01:05:02 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:08:01 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed zlib from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.11-4pt75q7qq6lygf3hgnona4lyc2uwedul + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.11-4pt75q7qq6lygf3hgnona4lyc2uwedul Note that this installation is located separately from the previous one. We will discuss this in more detail later, but this is part of what @@ -175,43 +185,35 @@ compilers. .. code-block:: console - $ spack install --use-cache zlib@1.2.8 + $ spack install zlib@1.2.8 ==> Installing zlib ==> Searching for binary cache of zlib - ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-zlib-1.2.11-4pt75q7qq6lygf3hgnona4lyc2uwedul.spec.yaml - ######################################################################## 100.0% + ==> Finding buildcaches in /mirror/build_cache ==> Installing zlib from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8/linux-ubuntu16.04-x86_64-gcc-5.4.0-zlib-1.2.8-bkyl5bhuep6fmhuxzkmhqy25qefjcvzc.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8/linux-ubuntu16.04-x86_64-gcc-5.4.0-zlib-1.2.8-bkyl5bhuep6fmhuxzkmhqy25qefjcvzc.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 01:05:03 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:18:30 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed zlib from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-bkyl5bhuep6fmhuxzkmhqy25qefjcvzc + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-bkyl5bhuep6fmhuxzkmhqy25qefjcvzc - $ spack install --use-cache zlib %gcc@4.7 + $ spack install zlib %gcc@4.7 ==> Installing zlib ==> Searching for binary cache of zlib - ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-zlib-1.2.8-bkyl5bhuep6fmhuxzkmhqy25qefjcvzc.spec.yaml - ######################################################################## 100.0% + ==> Finding buildcaches in /mirror/build_cache ==> Installing zlib from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-4.7/zlib-1.2.11/linux-ubuntu16.04-x86_64-gcc-4.7-zlib-1.2.11-bq2wtdxakpjytk2tjr7qu23i4py2fi2r.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-4.7/zlib-1.2.11/linux-ubuntu16.04-x86_64-gcc-4.7-zlib-1.2.11-bq2wtdxakpjytk2tjr7qu23i4py2fi2r.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 01:03:00 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 04:55:30 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed zlib from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-4.7/zlib-1.2.11-bq2wtdxakpjytk2tjr7qu23i4py2fi2r + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-4.7/zlib-1.2.11-bq2wtdxakpjytk2tjr7qu23i4py2fi2r The spec syntax also includes compiler flags. Spack accepts ``cppflags``, ``cflags``, ``cxxflags``, ``fflags``, ``ldflags``, and @@ -221,24 +223,20 @@ into the compile line automatically by the Spack compiler wrappers. .. code-block:: console - $ spack install --use-cache zlib @1.2.8 cppflags=-O3 + $ spack install zlib @1.2.8 cppflags=-O3 ==> Installing zlib ==> Searching for binary cache of zlib - ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-4.7-zlib-1.2.11-bq2wtdxakpjytk2tjr7qu23i4py2fi2r.spec.yaml - ######################################################################## 100.0% + ==> Finding buildcaches in /mirror/build_cache ==> Installing zlib from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8/linux-ubuntu16.04-x86_64-gcc-5.4.0-zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8/linux-ubuntu16.04-x86_64-gcc-5.4.0-zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 01:03:00 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:31:54 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed zlib from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu The ``spack find`` command is used to query installed packages. Note that some packages appear identical with the default output. The ``-l`` flag @@ -286,25 +284,21 @@ existing package's hash matches the desired spec. .. code-block:: console - $ spack install --use-cache openssl - ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb - ==> Installing openssl - ==> Searching for binary cache of openssl - ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu.spec.yaml + $ spack install tcl + ==> zlib is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + ==> Installing tcl + ==> Searching for binary cache of tcl + ==> Finding buildcaches in /mirror/build_cache + ==> Installing tcl from binary cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/tcl-8.6.8/linux-ubuntu16.04-x86_64-gcc-5.4.0-tcl-8.6.8-qhwyccywhx2i6s7ob2gvjrjtj3rnfuqt.spack ######################################################################## 100.0% - ==> Installing openssl from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k/linux-ubuntu16.04-x86_64-gcc-5.4.0-openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom.spack - ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 01:03:18 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:07:15 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. - ==> Successfully installed openssl from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom + ==> Successfully installed tcl from binary cache + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/tcl-8.6.8-qhwyccywhx2i6s7ob2gvjrjtj3rnfuqt Dependencies can be explicitly requested using the ``^`` sigil. Note that the spec syntax is recursive. Anything we could specify about the @@ -312,38 +306,32 @@ top-level package, we can also specify about a dependency using ``^``. .. code-block:: console - $ spack install --use-cache openssl ^zlib @1.2.8 %clang + $ spack install tcl ^zlib @1.2.8 %clang ==> Installing zlib ==> Searching for binary cache of zlib - ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom.spec.yaml - ######################################################################## 100.0% + ==> Finding buildcaches in /mirror/build_cache ==> Installing zlib from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.8/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-zlib-1.2.8-i426yu3o6lyau5fv5ljwsajfkqxj5rl5.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.8/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-zlib-1.2.8-i426yu3o6lyau5fv5ljwsajfkqxj5rl5.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 01:03:06 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:09:01 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed zlib from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.8-i426yu3o6lyau5fv5ljwsajfkqxj5rl5 - ==> Installing openssl - ==> Searching for binary cache of openssl - ==> Installing openssl from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/openssl-1.0.2k/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-openssl-1.0.2k-ufruk7kj2fz3oupuat2jbgc2y7hg37vy.spack + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.8-i426yu3o6lyau5fv5ljwsajfkqxj5rl5 + ==> Installing tcl + ==> Searching for binary cache of tcl + ==> Installing tcl from binary cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/tcl-8.6.8/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-tcl-8.6.8-6wc66etr7y6hgibp2derrdkf763exwvc.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 01:03:23 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:10:21 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. - ==> Successfully installed openssl from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/openssl-1.0.2k-ufruk7kj2fz3oupuat2jbgc2y7hg37vy + ==> Successfully installed tcl from binary cache + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/tcl-8.6.8-6wc66etr7y6hgibp2derrdkf763exwvc Packages can also be referred to from the command line by their package hash. Using the ``spack find -lf`` command earlier we saw that the hash @@ -357,27 +345,21 @@ packages share the prefix) then spack will report an error. .. code-block:: console - $ spack install --use-cache openssl ^/64mn - ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu - ==> Installing openssl - ==> Searching for binary cache of openssl - ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-zlib-1.2.8-i426yu3o6lyau5fv5ljwsajfkqxj5rl5.spec.yaml - ######################################################################## 100.0% - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-openssl-1.0.2k-ufruk7kj2fz3oupuat2jbgc2y7hg37vy.spec.yaml - ######################################################################## 100.0% - ==> Installing openssl from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k/linux-ubuntu16.04-x86_64-gcc-5.4.0-openssl-1.0.2k-gyxmhgbam26d7y42omb7xrvkjjgmzwio.spack + $ spack install tcl ^/64mn + ==> zlib is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu + ==> Installing tcl + ==> Searching for binary cache of tcl + ==> Finding buildcaches in /mirror/build_cache + ==> Installing tcl from binary cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/tcl-8.6.8/linux-ubuntu16.04-x86_64-gcc-5.4.0-tcl-8.6.8-am4pbatrtga3etyusg2akmsvrswwxno2.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 01:03:12 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:11:53 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. - ==> Successfully installed openssl from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-gyxmhgbam26d7y42omb7xrvkjjgmzwio + ==> Successfully installed tcl from binary cache + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/tcl-8.6.8-am4pbatrtga3etyusg2akmsvrswwxno2 The ``spack find`` command can also take a ``-d`` flag, which can show dependency information. Note that each package has a top-level entry, @@ -386,9 +368,9 @@ even if it also appears as a dependency. .. code-block:: console $ spack find -ldf - ==> 9 installed packages. + ==> 9 installed packages -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- - ufruk7k openssl@1.0.2k%clang + 6wc66et tcl@8.6.8%clang i426yu3 ^zlib@1.2.8%clang i426yu3 zlib@1.2.8%clang @@ -401,10 +383,10 @@ even if it also appears as a dependency. -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- - gyxmhgb openssl@1.0.2k%gcc + am4pbat tcl@8.6.8%gcc 64mns5m ^zlib@1.2.8%gcc cppflags="-O3" - 2woov64 openssl@1.0.2k%gcc + qhwyccy tcl@8.6.8%gcc 5nus6kn ^zlib@1.2.11%gcc bkyl5bh zlib@1.2.8%gcc @@ -420,197 +402,250 @@ we install it "out of the box," it will build with ``openmpi``. .. code-block:: console - $ spack install --use-cache hdf5 + $ spack install hdf5 ==> Installing libsigsegv ==> Searching for binary cache of libsigsegv - ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-openssl-1.0.2k-gyxmhgbam26d7y42omb7xrvkjjgmzwio.spec.yaml - ######################################################################## 100.0% + ==> Finding buildcaches in /mirror/build_cache ==> Installing libsigsegv from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11/linux-ubuntu16.04-x86_64-gcc-5.4.0-libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11/linux-ubuntu16.04-x86_64-gcc-5.4.0-libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 01:21:10 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:08:01 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed libsigsegv from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz ==> Installing m4 ==> Searching for binary cache of m4 ==> Installing m4 from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18/linux-ubuntu16.04-x86_64-gcc-5.4.0-m4-1.4.18-r5envx3kqctwwflhd4qax4ahqtt6x43a.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18/linux-ubuntu16.04-x86_64-gcc-5.4.0-m4-1.4.18-suf5jtcfehivwfesrc5hjy72r4nukyel.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 01:22:03 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:24:11 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed m4 from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-r5envx3kqctwwflhd4qax4ahqtt6x43a + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-suf5jtcfehivwfesrc5hjy72r4nukyel ==> Installing libtool ==> Searching for binary cache of libtool ==> Installing libtool from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6/linux-ubuntu16.04-x86_64-gcc-5.4.0-libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6/linux-ubuntu16.04-x86_64-gcc-5.4.0-libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 01:29:09 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:12:47 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed libtool from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu - ==> Installing pkg-config - ==> Searching for binary cache of pkg-config - ==> Installing pkg-config from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkg-config-0.29.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-pkg-config-0.29.2-ae2hwm7q57byfbxtymts55xppqwk7ecj.spack + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu + ==> Installing pkgconf + ==> Searching for binary cache of pkgconf + ==> Installing pkgconf from binary cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkgconf-1.4.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-pkgconf-1.4.2-fovrh7alpft646n6mhis5mml6k6e5f4v.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 01:30:13 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:00:47 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. - ==> Successfully installed pkg-config from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkg-config-0.29.2-ae2hwm7q57byfbxtymts55xppqwk7ecj + ==> Successfully installed pkgconf from binary cache + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkgconf-1.4.2-fovrh7alpft646n6mhis5mml6k6e5f4v ==> Installing util-macros ==> Searching for binary cache of util-macros ==> Installing util-macros from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/util-macros-1.19.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/util-macros-1.19.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 01:30:12 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:31:54 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed util-macros from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr ==> Installing libpciaccess ==> Searching for binary cache of libpciaccess ==> Installing libpciaccess from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libpciaccess-0.13.5/linux-ubuntu16.04-x86_64-gcc-5.4.0-libpciaccess-0.13.5-5urc6tcjae26fbbd2wyfohoszhgxtbmc.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libpciaccess-0.13.5/linux-ubuntu16.04-x86_64-gcc-5.4.0-libpciaccess-0.13.5-5urc6tcjae26fbbd2wyfohoszhgxtbmc.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:30:23 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:09:34 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed libpciaccess from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libpciaccess-0.13.5-5urc6tcjae26fbbd2wyfohoszhgxtbmc + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libpciaccess-0.13.5-5urc6tcjae26fbbd2wyfohoszhgxtbmc ==> Installing xz ==> Searching for binary cache of xz ==> Installing xz from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/xz-5.2.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-xz-5.2.3-htnq7wqdrqtof6uxqicdj3f7oe3xz6pw.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/xz-5.2.4/linux-ubuntu16.04-x86_64-gcc-5.4.0-xz-5.2.4-teneqii2xv5u6zl5r6qi3pwurc6pmypz.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:30:34 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:05:03 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed xz from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/xz-5.2.3-htnq7wqdrqtof6uxqicdj3f7oe3xz6pw - ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/xz-5.2.4-teneqii2xv5u6zl5r6qi3pwurc6pmypz + ==> zlib is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb ==> Installing libxml2 ==> Searching for binary cache of libxml2 ==> Installing libxml2 from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libxml2-2.9.4/linux-ubuntu16.04-x86_64-gcc-5.4.0-libxml2-2.9.4-sxk64lvcxhqjflzesnf3ye4wakovwi45.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libxml2-2.9.8/linux-ubuntu16.04-x86_64-gcc-5.4.0-libxml2-2.9.8-wpexsphdmfayxqxd4up5vgwuqgu5woo7.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:30:23 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 04:56:04 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed libxml2 from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libxml2-2.9.4-sxk64lvcxhqjflzesnf3ye4wakovwi45 + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libxml2-2.9.8-wpexsphdmfayxqxd4up5vgwuqgu5woo7 + ==> Installing ncurses + ==> Searching for binary cache of ncurses + ==> Installing ncurses from binary cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-ncurses-6.1-3o765ourmesfrji6yeclb4wb5w54aqbh.spack + ######################################################################## 100.0% + gpg: Signature made Sat Nov 10 05:04:49 2018 UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Successfully installed ncurses from binary cache + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.1-3o765ourmesfrji6yeclb4wb5w54aqbh + ==> Installing readline + ==> Searching for binary cache of readline + ==> Installing readline from binary cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/readline-7.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-readline-7.0-nxhwrg7xwc6nbsm2v4ezwe63l6nfidbi.spack + ######################################################################## 100.0% + gpg: Signature made Sat Nov 10 05:04:56 2018 UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Successfully installed readline from binary cache + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/readline-7.0-nxhwrg7xwc6nbsm2v4ezwe63l6nfidbi + ==> Installing gdbm + ==> Searching for binary cache of gdbm + ==> Installing gdbm from binary cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/gdbm-1.14.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-gdbm-1.14.1-q4fpyuo7ouhkeq6d3oabtrppctpvxmes.spack + ######################################################################## 100.0% + gpg: Signature made Sat Nov 10 05:18:34 2018 UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Successfully installed gdbm from binary cache + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gdbm-1.14.1-q4fpyuo7ouhkeq6d3oabtrppctpvxmes + ==> Installing perl + ==> Searching for binary cache of perl + ==> Installing perl from binary cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/perl-5.26.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-perl-5.26.2-ic2kyoadgp3dxfejcbllyplj2wf524fo.spack + ######################################################################## 100.0% + gpg: Signature made Sat Nov 10 05:12:45 2018 UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Successfully installed perl from binary cache + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/perl-5.26.2-ic2kyoadgp3dxfejcbllyplj2wf524fo + ==> Installing autoconf + ==> Searching for binary cache of autoconf + ==> Installing autoconf from binary cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/autoconf-2.69/linux-ubuntu16.04-x86_64-gcc-5.4.0-autoconf-2.69-3sx2gxeibc4oasqd4o5h6lnwpcpsgd2q.spack + ######################################################################## 100.0% + gpg: Signature made Sat Nov 10 05:24:03 2018 UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Successfully installed autoconf from binary cache + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/autoconf-2.69-3sx2gxeibc4oasqd4o5h6lnwpcpsgd2q + ==> Installing automake + ==> Searching for binary cache of automake + ==> Installing automake from binary cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/automake-1.16.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-automake-1.16.1-rymw7imfehycqxzj4nuy2oiw3abegooy.spack + ######################################################################## 100.0% + gpg: Signature made Sat Nov 10 05:12:03 2018 UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Successfully installed automake from binary cache + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/automake-1.16.1-rymw7imfehycqxzj4nuy2oiw3abegooy + ==> Installing numactl + ==> Searching for binary cache of numactl + ==> Installing numactl from binary cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/numactl-2.0.11/linux-ubuntu16.04-x86_64-gcc-5.4.0-numactl-2.0.11-ft463odrombnxlc3qew4omckhlq7tqgc.spack + ######################################################################## 100.0% + gpg: Signature made Sat Nov 10 05:30:34 2018 UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Successfully installed numactl from binary cache + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/numactl-2.0.11-ft463odrombnxlc3qew4omckhlq7tqgc ==> Installing hwloc ==> Searching for binary cache of hwloc ==> Installing hwloc from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hwloc-1.11.8/linux-ubuntu16.04-x86_64-gcc-5.4.0-hwloc-1.11.8-ivg4d2e6anxwin4zbld2g4qlrbuquoyg.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hwloc-1.11.9/linux-ubuntu16.04-x86_64-gcc-5.4.0-hwloc-1.11.9-43tkw5mt6huhv37vqnybqgxtkodbsava.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:30:32 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:08:00 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed hwloc from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hwloc-1.11.8-ivg4d2e6anxwin4zbld2g4qlrbuquoyg + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hwloc-1.11.9-43tkw5mt6huhv37vqnybqgxtkodbsava ==> Installing openmpi ==> Searching for binary cache of openmpi ==> Installing openmpi from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.0.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-openmpi-3.0.0-yo5qkfvumpmgmvlbalqcadu46j5bd52f.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.1.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-openmpi-3.1.3-3njc4q5pqdpptq6jvqjrezkffwokv2sx.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:43:34 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:01:54 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed openmpi from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.0.0-yo5qkfvumpmgmvlbalqcadu46j5bd52f + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.1.3-3njc4q5pqdpptq6jvqjrezkffwokv2sx ==> Installing hdf5 ==> Searching for binary cache of hdf5 ==> Installing hdf5 from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-bovz45ms24pmfr7hlckf56bxegfc4rea.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.4/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.4-ozyvmhzdew66byarohm4p36ep7wtcuiw.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:53:08 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:23:04 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed hdf5 from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-bovz45ms24pmfr7hlckf56bxegfc4rea + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.4-ozyvmhzdew66byarohm4p36ep7wtcuiw -Spack packages can also have variants. Boolean variants can be specified -using the ``+`` and ``~`` or ``-`` sigils. There are two sigils for -``False`` to avoid conflicts with shell parsing in different -situations. Variants (boolean or otherwise) can also be specified using -the same syntax as compiler flags. Here we can install HDF5 without MPI -support. +Spack packages can also have build options, called variants. Boolean +variants can be specified using the ``+`` and ``~`` or ``-`` +sigils. There are two sigils for ``False`` to avoid conflicts with +shell parsing in different situations. Variants (boolean or otherwise) +can also be specified using the same syntax as compiler flags. Here +we can install HDF5 without MPI support. .. code-block:: console - $ spack install --use-cache hdf5~mpi - ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + $ spack install hdf5~mpi + ==> zlib is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb ==> Installing hdf5 ==> Searching for binary cache of hdf5 - ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-openmpi-3.0.0-yo5qkfvumpmgmvlbalqcadu46j5bd52f.spec.yaml - ######################################################################## 100.0% - ... - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr.spec.yaml - ######################################################################## 100.0% + ==> Finding buildcaches in /mirror/build_cache ==> Installing hdf5 from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-pa6oqzfeqzkqkzqr2375fqyt3qggx3tr.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.4/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.4-5vcv5r67vpjzenq4apyebshclelnzuja.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:53:40 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:23:24 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed hdf5 from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-pa6oqzfeqzkqkzqr2375fqyt3qggx3tr + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.4-5vcv5r67vpjzenq4apyebshclelnzuja We might also want to install HDF5 with a different MPI implementation. While MPI is not a package itself, packages can depend on @@ -627,48 +662,76 @@ by any of several providers. .. code-block:: console - $ spack install --use-cache hdf5+hl+mpi ^mpich + $ spack install hdf5+hl+mpi ^mpich + ==> libsigsegv is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz + ==> m4 is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-suf5jtcfehivwfesrc5hjy72r4nukyel + ==> pkgconf is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkgconf-1.4.2-fovrh7alpft646n6mhis5mml6k6e5f4v + ==> ncurses is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.1-3o765ourmesfrji6yeclb4wb5w54aqbh + ==> readline is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/readline-7.0-nxhwrg7xwc6nbsm2v4ezwe63l6nfidbi + ==> gdbm is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gdbm-1.14.1-q4fpyuo7ouhkeq6d3oabtrppctpvxmes + ==> perl is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/perl-5.26.2-ic2kyoadgp3dxfejcbllyplj2wf524fo + ==> autoconf is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/autoconf-2.69-3sx2gxeibc4oasqd4o5h6lnwpcpsgd2q + ==> automake is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/automake-1.16.1-rymw7imfehycqxzj4nuy2oiw3abegooy + ==> libtool is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu + ==> Installing texinfo + ==> Searching for binary cache of texinfo + ==> Finding buildcaches in /mirror/build_cache + ==> Installing texinfo from binary cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/texinfo-6.5/linux-ubuntu16.04-x86_64-gcc-5.4.0-texinfo-6.5-zs7a2pcwhq6ho2cj2x26uxfktwkpyucn.spack + ######################################################################## 100.0% + gpg: Signature made Sat Nov 10 05:18:29 2018 UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Successfully installed texinfo from binary cache + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/texinfo-6.5-zs7a2pcwhq6ho2cj2x26uxfktwkpyucn + ==> Installing findutils + ==> Searching for binary cache of findutils + ==> Installing findutils from binary cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/findutils-4.6.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-findutils-4.6.0-d4iajxsopzrlcjtasahxqeyjkjv5jx4v.spack + ######################################################################## 100.0% + gpg: Signature made Sat Nov 10 05:07:17 2018 UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Successfully installed findutils from binary cache + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/findutils-4.6.0-d4iajxsopzrlcjtasahxqeyjkjv5jx4v ==> Installing mpich ==> Searching for binary cache of mpich - ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-pa6oqzfeqzkqkzqr2375fqyt3qggx3tr.spec.yaml - ######################################################################## 100.0% ==> Installing mpich from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpich-3.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-mpich-3.2-cymrnoowcc4vdyvdnf5ypvob4cmdadk5.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpich-3.2.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-mpich-3.2.1-p3f7p2r5ntrynqibosglxvhwyztiwqs5.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:45:26 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:23:57 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed mpich from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpich-3.2-cymrnoowcc4vdyvdnf5ypvob4cmdadk5 - ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpich-3.2.1-p3f7p2r5ntrynqibosglxvhwyztiwqs5 + ==> zlib is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb ==> Installing hdf5 ==> Searching for binary cache of hdf5 ==> Installing hdf5 from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-e4gz6f2l5ik3ijuk3alwsqplex4tbvin.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.4/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.4-xxd7syhgej6onpyfyewxqcqe7ltkt7ob.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:49:45 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:07:32 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed hdf5 from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-e4gz6f2l5ik3ijuk3alwsqplex4tbvin + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.4-xxd7syhgej6onpyfyewxqcqe7ltkt7ob We'll do a quick check in on what we have installed so far. .. code-block:: console $ spack find -ldf - ==> 23 installed packages. + ==> 32 installed packages -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- - ufruk7k openssl@1.0.2k%clang + 6wc66et tcl@8.6.8%clang i426yu3 ^zlib@1.2.8%clang i426yu3 zlib@1.2.8%clang @@ -681,26 +744,48 @@ We'll do a quick check in on what we have installed so far. -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- - pa6oqzf hdf5@1.10.1%gcc + 3sx2gxe autoconf@2.69%gcc + suf5jtc ^m4@1.4.18%gcc + fypapcp ^libsigsegv@2.11%gcc + ic2kyoa ^perl@5.26.2%gcc + q4fpyuo ^gdbm@1.14.1%gcc + nxhwrg7 ^readline@7.0%gcc + 3o765ou ^ncurses@6.1%gcc + + rymw7im automake@1.16.1%gcc + ic2kyoa ^perl@5.26.2%gcc + q4fpyuo ^gdbm@1.14.1%gcc + nxhwrg7 ^readline@7.0%gcc + 3o765ou ^ncurses@6.1%gcc + + d4iajxs findutils@4.6.0%gcc + + q4fpyuo gdbm@1.14.1%gcc + nxhwrg7 ^readline@7.0%gcc + 3o765ou ^ncurses@6.1%gcc + + 5vcv5r6 hdf5@1.10.4%gcc 5nus6kn ^zlib@1.2.11%gcc - bovz45m hdf5@1.10.1%gcc - yo5qkfv ^openmpi@3.0.0%gcc - ivg4d2e ^hwloc@1.11.8%gcc + ozyvmhz hdf5@1.10.4%gcc + 3njc4q5 ^openmpi@3.1.3%gcc + 43tkw5m ^hwloc@1.11.9%gcc 5urc6tc ^libpciaccess@0.13.5%gcc - sxk64lv ^libxml2@2.9.4%gcc - htnq7wq ^xz@5.2.3%gcc + wpexsph ^libxml2@2.9.8%gcc + teneqii ^xz@5.2.4%gcc 5nus6kn ^zlib@1.2.11%gcc + ft463od ^numactl@2.0.11%gcc - e4gz6f2 hdf5@1.10.1%gcc - cymrnoo ^mpich@3.2%gcc + xxd7syh hdf5@1.10.4%gcc + p3f7p2r ^mpich@3.2.1%gcc 5nus6kn ^zlib@1.2.11%gcc - ivg4d2e hwloc@1.11.8%gcc + 43tkw5m hwloc@1.11.9%gcc 5urc6tc ^libpciaccess@0.13.5%gcc - sxk64lv ^libxml2@2.9.4%gcc - htnq7wq ^xz@5.2.3%gcc + wpexsph ^libxml2@2.9.8%gcc + teneqii ^xz@5.2.4%gcc 5nus6kn ^zlib@1.2.11%gcc + ft463od ^numactl@2.0.11%gcc 5urc6tc libpciaccess@0.13.5%gcc @@ -708,33 +793,52 @@ We'll do a quick check in on what we have installed so far. o2pfwjf libtool@2.4.6%gcc - sxk64lv libxml2@2.9.4%gcc - htnq7wq ^xz@5.2.3%gcc + wpexsph libxml2@2.9.8%gcc + teneqii ^xz@5.2.4%gcc 5nus6kn ^zlib@1.2.11%gcc - r5envx3 m4@1.4.18%gcc + suf5jtc m4@1.4.18%gcc fypapcp ^libsigsegv@2.11%gcc - cymrnoo mpich@3.2%gcc + p3f7p2r mpich@3.2.1%gcc - yo5qkfv openmpi@3.0.0%gcc - ivg4d2e ^hwloc@1.11.8%gcc + 3o765ou ncurses@6.1%gcc + + ft463od numactl@2.0.11%gcc + + 3njc4q5 openmpi@3.1.3%gcc + 43tkw5m ^hwloc@1.11.9%gcc 5urc6tc ^libpciaccess@0.13.5%gcc - sxk64lv ^libxml2@2.9.4%gcc - htnq7wq ^xz@5.2.3%gcc + wpexsph ^libxml2@2.9.8%gcc + teneqii ^xz@5.2.4%gcc 5nus6kn ^zlib@1.2.11%gcc + ft463od ^numactl@2.0.11%gcc + + ic2kyoa perl@5.26.2%gcc + q4fpyuo ^gdbm@1.14.1%gcc + nxhwrg7 ^readline@7.0%gcc + 3o765ou ^ncurses@6.1%gcc - gyxmhgb openssl@1.0.2k%gcc + fovrh7a pkgconf@1.4.2%gcc + + nxhwrg7 readline@7.0%gcc + 3o765ou ^ncurses@6.1%gcc + + am4pbat tcl@8.6.8%gcc 64mns5m ^zlib@1.2.8%gcc cppflags="-O3" - 2woov64 openssl@1.0.2k%gcc + qhwyccy tcl@8.6.8%gcc 5nus6kn ^zlib@1.2.11%gcc - ae2hwm7 pkg-config@0.29.2%gcc + zs7a2pc texinfo@6.5%gcc + ic2kyoa ^perl@5.26.2%gcc + q4fpyuo ^gdbm@1.14.1%gcc + nxhwrg7 ^readline@7.0%gcc + 3o765ou ^ncurses@6.1%gcc milz7fm util-macros@1.19.1%gcc - htnq7wq xz@5.2.3%gcc + teneqii xz@5.2.4%gcc bkyl5bh zlib@1.2.8%gcc @@ -756,6 +860,30 @@ DAG as a graph. o | zlib / o mpich + o findutils + |\ + | |\ + | | |\ + | | | |\ + o | | | | texinfo + | | | o | automake + | |_|/| | + |/| | | | + | | | |/ + | | | o autoconf + | |_|/| + |/| |/ + | |/| + o | | perl + o | | gdbm + o | | readline + o | | ncurses + o | | pkgconf + / / + | o libtool + |/ + o m4 + o libsigsegv You may also have noticed that there are some packages shown in the ``spack find -d`` output that we didn't install explicitly. These are @@ -777,270 +905,237 @@ let's look at an even more complicated package. .. code-block:: console - $ spack install --use-cache trilinos + $ spack install trilinos + ==> Installing diffutils + ==> Searching for binary cache of diffutils + ==> Finding buildcaches in /mirror/build_cache + ==> Installing diffutils from binary cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/diffutils-3.6/linux-ubuntu16.04-x86_64-gcc-5.4.0-diffutils-3.6-2rhuivgjrna2nrxhntyde6md2khcvs34.spack + ######################################################################## 100.0% + gpg: Signature made Sat Nov 10 05:30:17 2018 UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Successfully installed diffutils from binary cache + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/diffutils-3.6-2rhuivgjrna2nrxhntyde6md2khcvs34 ==> Installing bzip2 ==> Searching for binary cache of bzip2 - ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-e4gz6f2l5ik3ijuk3alwsqplex4tbvin.spec.yaml - ######################################################################## 100.0% - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-mpich-3.2-cymrnoowcc4vdyvdnf5ypvob4cmdadk5.spec.yaml - ######################################################################## 100.0% ==> Installing bzip2 from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/bzip2-1.0.6/linux-ubuntu16.04-x86_64-gcc-5.4.0-bzip2-1.0.6-ufczdvsqt6edesm36xiucyry7myhj7e7.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/bzip2-1.0.6/linux-ubuntu16.04-x86_64-gcc-5.4.0-bzip2-1.0.6-ufczdvsqt6edesm36xiucyry7myhj7e7.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:39:37 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:34:37 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed bzip2 from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/bzip2-1.0.6-ufczdvsqt6edesm36xiucyry7myhj7e7 - ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/bzip2-1.0.6-ufczdvsqt6edesm36xiucyry7myhj7e7 + ==> zlib is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb ==> Installing boost ==> Searching for binary cache of boost ==> Installing boost from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/boost-1.65.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-boost-1.65.1-xxqnbqql5nup7rujer2ury3hsdgcumzb.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/boost-1.68.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-boost-1.68.0-zbgfxapchxa4awxdwpleubfuznblxzvt.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:43:14 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 04:58:55 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed boost from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/boost-1.65.1-xxqnbqql5nup7rujer2ury3hsdgcumzb - ==> pkg-config is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkg-config-0.29.2-ae2hwm7q57byfbxtymts55xppqwk7ecj - ==> Installing ncurses - ==> Searching for binary cache of ncurses - ==> Installing ncurses from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-ncurses-6.0-ukq4tccptm2rxd56d2bumqthnpcjzlez.spack + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/boost-1.68.0-zbgfxapchxa4awxdwpleubfuznblxzvt + ==> pkgconf is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkgconf-1.4.2-fovrh7alpft646n6mhis5mml6k6e5f4v + ==> ncurses is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.1-3o765ourmesfrji6yeclb4wb5w54aqbh + ==> readline is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/readline-7.0-nxhwrg7xwc6nbsm2v4ezwe63l6nfidbi + ==> gdbm is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gdbm-1.14.1-q4fpyuo7ouhkeq6d3oabtrppctpvxmes + ==> perl is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/perl-5.26.2-ic2kyoadgp3dxfejcbllyplj2wf524fo + ==> Installing openssl + ==> Searching for binary cache of openssl + ==> Installing openssl from binary cache + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2o/linux-ubuntu16.04-x86_64-gcc-5.4.0-openssl-1.0.2o-b4y3w3bsyvjla6eesv4vt6aplpfrpsha.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 01:06:38 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:24:10 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. - ==> Successfully installed ncurses from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.0-ukq4tccptm2rxd56d2bumqthnpcjzlez - ==> openssl is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom + ==> Successfully installed openssl from binary cache + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2o-b4y3w3bsyvjla6eesv4vt6aplpfrpsha ==> Installing cmake ==> Searching for binary cache of cmake ==> Installing cmake from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/cmake-3.9.4/linux-ubuntu16.04-x86_64-gcc-5.4.0-cmake-3.9.4-a2lyofsoxutyy4ihvzopizpbjubtdoem.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/cmake-3.12.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-cmake-3.12.3-otafqzhh4xnlq2mpakch7dr3tjfsrjnx.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 01:22:03 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:33:15 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed cmake from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/cmake-3.9.4-a2lyofsoxutyy4ihvzopizpbjubtdoem + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/cmake-3.12.3-otafqzhh4xnlq2mpakch7dr3tjfsrjnx ==> Installing glm ==> Searching for binary cache of glm ==> Installing glm from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/glm-0.9.7.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-glm-0.9.7.1-jnw622jwcbsymzj2fsx22omjl7tmvaws.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/glm-0.9.7.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-glm-0.9.7.1-jnw622jwcbsymzj2fsx22omjl7tmvaws.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:30:38 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:30:33 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed glm from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/glm-0.9.7.1-jnw622jwcbsymzj2fsx22omjl7tmvaws - ==> libsigsegv is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz - ==> m4 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-r5envx3kqctwwflhd4qax4ahqtt6x43a - ==> libtool is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu - ==> util-macros is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr - ==> libpciaccess is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libpciaccess-0.13.5-5urc6tcjae26fbbd2wyfohoszhgxtbmc - ==> xz is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/xz-5.2.3-htnq7wqdrqtof6uxqicdj3f7oe3xz6pw - ==> libxml2 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libxml2-2.9.4-sxk64lvcxhqjflzesnf3ye4wakovwi45 - ==> hwloc is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hwloc-1.11.8-ivg4d2e6anxwin4zbld2g4qlrbuquoyg - ==> openmpi is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.0.0-yo5qkfvumpmgmvlbalqcadu46j5bd52f + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/glm-0.9.7.1-jnw622jwcbsymzj2fsx22omjl7tmvaws + ==> libsigsegv is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz + ==> m4 is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-suf5jtcfehivwfesrc5hjy72r4nukyel + ==> libtool is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu + ==> util-macros is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr + ==> libpciaccess is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libpciaccess-0.13.5-5urc6tcjae26fbbd2wyfohoszhgxtbmc + ==> xz is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/xz-5.2.4-teneqii2xv5u6zl5r6qi3pwurc6pmypz + ==> libxml2 is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libxml2-2.9.8-wpexsphdmfayxqxd4up5vgwuqgu5woo7 + ==> autoconf is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/autoconf-2.69-3sx2gxeibc4oasqd4o5h6lnwpcpsgd2q + ==> automake is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/automake-1.16.1-rymw7imfehycqxzj4nuy2oiw3abegooy + ==> numactl is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/numactl-2.0.11-ft463odrombnxlc3qew4omckhlq7tqgc + ==> hwloc is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hwloc-1.11.9-43tkw5mt6huhv37vqnybqgxtkodbsava + ==> openmpi is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.1.3-3njc4q5pqdpptq6jvqjrezkffwokv2sx ==> Installing hdf5 ==> Searching for binary cache of hdf5 ==> Installing hdf5 from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-d73xxpvfxgd2z2ypmuuwtxhoxmzdglez.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.4/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.4-oqwnui7wtovuf2id4vjwcxfmxlzjus6y.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:39:36 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:09:10 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed hdf5 from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-d73xxpvfxgd2z2ypmuuwtxhoxmzdglez + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.4-oqwnui7wtovuf2id4vjwcxfmxlzjus6y ==> Installing openblas ==> Searching for binary cache of openblas ==> Installing openblas from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/openblas-0.2.20/linux-ubuntu16.04-x86_64-gcc-5.4.0-openblas-0.2.20-4dahl6ltbpojei4s3stbqbq5iuuqlaxo.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/openblas-0.3.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-openblas-0.3.3-cyeg2yiitpuqglhvbox5gtbgsim2v5vn.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:43:22 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:32:04 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed openblas from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openblas-0.2.20-4dahl6ltbpojei4s3stbqbq5iuuqlaxo + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openblas-0.3.3-cyeg2yiitpuqglhvbox5gtbgsim2v5vn ==> Installing hypre ==> Searching for binary cache of hypre ==> Installing hypre from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.12.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hypre-2.12.1-z3rgfzqc4gu4u4qvveyo2dqqzl2j463z.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.15.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hypre-2.15.1-fshksdpecwiq7r6vawfswpboedhbisju.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:30:17 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:07:34 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed hypre from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.12.1-z3rgfzqc4gu4u4qvveyo2dqqzl2j463z + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.15.1-fshksdpecwiq7r6vawfswpboedhbisju ==> Installing matio ==> Searching for binary cache of matio ==> Installing matio from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9/linux-ubuntu16.04-x86_64-gcc-5.4.0-matio-1.5.9-4ajrcuhdf5uktotnrfzufufy5vbd6any.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9/linux-ubuntu16.04-x86_64-gcc-5.4.0-matio-1.5.9-lmzdgssvobdljw52mtahelu2ju7osh6h.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:30:24 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:05:13 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed matio from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9-4ajrcuhdf5uktotnrfzufufy5vbd6any + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9-lmzdgssvobdljw52mtahelu2ju7osh6h ==> Installing metis ==> Searching for binary cache of metis ==> Installing metis from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/metis-5.1.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-metis-5.1.0-m34qytcqsvsaduxyh3wevf3kj6pbzyw6.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/metis-5.1.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-metis-5.1.0-3wnvp4ji3wwu4v4vymszrhx6naehs6jc.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:39:28 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:31:42 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed metis from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/metis-5.1.0-m34qytcqsvsaduxyh3wevf3kj6pbzyw6 + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/metis-5.1.0-3wnvp4ji3wwu4v4vymszrhx6naehs6jc ==> Installing netlib-scalapack ==> Searching for binary cache of netlib-scalapack ==> Installing netlib-scalapack from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-netlib-scalapack-2.0.2-xudg7xypr63nte6ifrdsmllilxbrfiar.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-netlib-scalapack-2.0.2-wotpfwfctgfkzzn2uescucxvvbg3tm6b.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:30:28 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:07:22 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed netlib-scalapack from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2-xudg7xypr63nte6ifrdsmllilxbrfiar + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2-wotpfwfctgfkzzn2uescucxvvbg3tm6b ==> Installing mumps ==> Searching for binary cache of mumps ==> Installing mumps from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-mumps-5.1.1-5a7hgodxoze47xqd32jcxhvzctex4ezx.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-mumps-5.1.1-acsg2dzroox2swssgc5cwgkvdy6jcm5q.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:30:15 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:18:32 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed mumps from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1-5a7hgodxoze47xqd32jcxhvzctex4ezx + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1-acsg2dzroox2swssgc5cwgkvdy6jcm5q ==> Installing netcdf ==> Searching for binary cache of netcdf ==> Installing netcdf from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.4.1.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-netcdf-4.4.1.1-gk2xxhbqijnrdwicawawcll4t3c7dvoj.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.6.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-netcdf-4.6.1-mhm4izpogf4mrjidyskb6ewtzxdi7t6g.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:43:37 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:11:57 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed netcdf from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.4.1.1-gk2xxhbqijnrdwicawawcll4t3c7dvoj + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.6.1-mhm4izpogf4mrjidyskb6ewtzxdi7t6g ==> Installing parmetis ==> Searching for binary cache of parmetis ==> Installing parmetis from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-parmetis-4.0.3-o4qdo7aylhejov2e5ii7tagrnw6qrrlo.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-parmetis-4.0.3-uv6h3sqx6quqg22hxesi2mw2un3kw6b7.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:39:37 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:12:04 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed parmetis from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3-o4qdo7aylhejov2e5ii7tagrnw6qrrlo + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3-uv6h3sqx6quqg22hxesi2mw2un3kw6b7 ==> Installing suite-sparse ==> Searching for binary cache of suite-sparse ==> Installing suite-sparse from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/suite-sparse-4.5.5/linux-ubuntu16.04-x86_64-gcc-5.4.0-suite-sparse-4.5.5-bg67crx4ltmxulnumuxjxqzrcobpmyzg.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/suite-sparse-5.3.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-suite-sparse-5.3.0-zaau4kifha2enpdcn3mjlrqym7hm7yon.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:30:31 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:22:54 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed suite-sparse from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/suite-sparse-4.5.5-bg67crx4ltmxulnumuxjxqzrcobpmyzg - ==> Installing superlu-dist - ==> Searching for binary cache of superlu-dist - ==> Installing superlu-dist from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/superlu-dist-5.2.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-superlu-dist-5.2.2-gggsamgizi2dwmwxglgzbxvg6hkamhol.spack - ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:43:35 AM UTC using RSA key ID 3B7C69B2 - gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] - gpg: WARNING: This key is not certified with a trusted signature! - gpg: There is no indication that the signature belongs to the owner. - Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. - ==> Successfully installed superlu-dist from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/superlu-dist-5.2.2-gggsamgizi2dwmwxglgzbxvg6hkamhol + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/suite-sparse-5.3.0-zaau4kifha2enpdcn3mjlrqym7hm7yon ==> Installing trilinos ==> Searching for binary cache of trilinos ==> Installing trilinos from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-trilinos-12.12.1-istwe3b43b7etgtrhcuzjem3p5gonc6h.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-trilinos-12.12.1-rlsruavxqvwk2tgxzxboclbo6ykjf54r.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 11:47:19 PM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:18:10 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed trilinos from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1-istwe3b43b7etgtrhcuzjem3p5gonc6h -Now we're starting to see the power of Spack. Trilinos has 11 top -level dependecies, many of which have dependencies of their -own. Installing more complex packages can take days or weeks even for -an experienced user. Although we've done a binary installation for the -tutorial, a source installation of trilinos using Spack takes about 3 -hours (depending on the system), but only 20 seconds of programmer -time. +Now we're starting to see the power of Spack. Trilinos in its default +configuration has 23 top level dependecies, many of which have +dependencies of their own. Installing more complex packages can take +days or weeks even for an experienced user. Although we've done a +binary installation for the tutorial, a source installation of +trilinos using Spack takes about 3 hours (depending on the system), +but only 20 seconds of programmer time. Spack manages constistency of the entire DAG. Every MPI dependency will be satisfied by the same configuration of MPI, etc. If we install @@ -1049,142 +1144,116 @@ with ``mpich``: .. code-block:: console - $ spack install --use-cache trilinos +hdf5 ^hdf5+hl+mpi ^mpich - ==> bzip2 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/bzip2-1.0.6-ufczdvsqt6edesm36xiucyry7myhj7e7 - ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb - ==> boost is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/boost-1.65.1-xxqnbqql5nup7rujer2ury3hsdgcumzb - ==> pkg-config is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkg-config-0.29.2-ae2hwm7q57byfbxtymts55xppqwk7ecj - ==> ncurses is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.0-ukq4tccptm2rxd56d2bumqthnpcjzlez - ==> openssl is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom - ==> cmake is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/cmake-3.9.4-a2lyofsoxutyy4ihvzopizpbjubtdoem - ==> glm is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/glm-0.9.7.1-jnw622jwcbsymzj2fsx22omjl7tmvaws - ==> mpich is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpich-3.2-cymrnoowcc4vdyvdnf5ypvob4cmdadk5 - ==> hdf5 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-e4gz6f2l5ik3ijuk3alwsqplex4tbvin - ==> openblas is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openblas-0.2.20-4dahl6ltbpojei4s3stbqbq5iuuqlaxo + $ spack install trilinos +hdf5 ^hdf5+hl+mpi ^mpich + ==> diffutils is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/diffutils-3.6-2rhuivgjrna2nrxhntyde6md2khcvs34 + ==> bzip2 is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/bzip2-1.0.6-ufczdvsqt6edesm36xiucyry7myhj7e7 + ==> zlib is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + ==> boost is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/boost-1.68.0-zbgfxapchxa4awxdwpleubfuznblxzvt + ==> pkgconf is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkgconf-1.4.2-fovrh7alpft646n6mhis5mml6k6e5f4v + ==> ncurses is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.1-3o765ourmesfrji6yeclb4wb5w54aqbh + ==> readline is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/readline-7.0-nxhwrg7xwc6nbsm2v4ezwe63l6nfidbi + ==> gdbm is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gdbm-1.14.1-q4fpyuo7ouhkeq6d3oabtrppctpvxmes + ==> perl is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/perl-5.26.2-ic2kyoadgp3dxfejcbllyplj2wf524fo + ==> openssl is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2o-b4y3w3bsyvjla6eesv4vt6aplpfrpsha + ==> cmake is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/cmake-3.12.3-otafqzhh4xnlq2mpakch7dr3tjfsrjnx + ==> glm is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/glm-0.9.7.1-jnw622jwcbsymzj2fsx22omjl7tmvaws + ==> libsigsegv is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz + ==> m4 is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-suf5jtcfehivwfesrc5hjy72r4nukyel + ==> autoconf is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/autoconf-2.69-3sx2gxeibc4oasqd4o5h6lnwpcpsgd2q + ==> automake is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/automake-1.16.1-rymw7imfehycqxzj4nuy2oiw3abegooy + ==> libtool is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu + ==> texinfo is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/texinfo-6.5-zs7a2pcwhq6ho2cj2x26uxfktwkpyucn + ==> findutils is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/findutils-4.6.0-d4iajxsopzrlcjtasahxqeyjkjv5jx4v + ==> mpich is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpich-3.2.1-p3f7p2r5ntrynqibosglxvhwyztiwqs5 + ==> hdf5 is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.4-xxd7syhgej6onpyfyewxqcqe7ltkt7ob + ==> openblas is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openblas-0.3.3-cyeg2yiitpuqglhvbox5gtbgsim2v5vn ==> Installing hypre ==> Searching for binary cache of hypre - ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-netcdf-4.4.1.1-gk2xxhbqijnrdwicawawcll4t3c7dvoj.spec.yaml - ######################################################################## 100.0% - ... - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-bzip2-1.0.6-ufczdvsqt6edesm36xiucyry7myhj7e7.spec.yaml - ######################################################################## 100.0% - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-boost-1.65.1-xxqnbqql5nup7rujer2ury3hsdgcumzb.spec.yaml - ######################################################################## 100.0% + ==> Finding buildcaches in /mirror/build_cache ==> Installing hypre from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.12.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hypre-2.12.1-3psjg2ka2qa26jtgitlil4vglqr67anj.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.15.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hypre-2.15.1-obewuozolon7tkdg4cfxc6ae2tzkronb.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:49:37 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:34:36 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed hypre from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.12.1-3psjg2ka2qa26jtgitlil4vglqr67anj + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.15.1-obewuozolon7tkdg4cfxc6ae2tzkronb ==> Installing matio ==> Searching for binary cache of matio ==> Installing matio from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9/linux-ubuntu16.04-x86_64-gcc-5.4.0-matio-1.5.9-3ibrutc6cs7x6ybyt5ni5n6djtq5okm2.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9/linux-ubuntu16.04-x86_64-gcc-5.4.0-matio-1.5.9-gvyqldhifflmvcrtui3b6s64jcczsxxh.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:45:26 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:25:11 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed matio from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9-3ibrutc6cs7x6ybyt5ni5n6djtq5okm2 - ==> metis is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/metis-5.1.0-m34qytcqsvsaduxyh3wevf3kj6pbzyw6 + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9-gvyqldhifflmvcrtui3b6s64jcczsxxh + ==> metis is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/metis-5.1.0-3wnvp4ji3wwu4v4vymszrhx6naehs6jc ==> Installing netlib-scalapack ==> Searching for binary cache of netlib-scalapack ==> Installing netlib-scalapack from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-netlib-scalapack-2.0.2-km7tsbgoyyywonyejkjoojskhc5knz3z.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-netlib-scalapack-2.0.2-p7iln2pcosw2ipyqoyr7ie6lpva2oj7r.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:49:49 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:32:20 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed netlib-scalapack from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2-km7tsbgoyyywonyejkjoojskhc5knz3z + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2-p7iln2pcosw2ipyqoyr7ie6lpva2oj7r ==> Installing mumps ==> Searching for binary cache of mumps ==> Installing mumps from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-mumps-5.1.1-phvk6yhkzqed6gjsbah6dnhlesdclild.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-mumps-5.1.1-cumcj5a75cagsznpjrgretxdg6okxaur.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:45:28 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:33:18 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed mumps from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1-phvk6yhkzqed6gjsbah6dnhlesdclild - ==> libsigsegv is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz - ==> m4 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-r5envx3kqctwwflhd4qax4ahqtt6x43a + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1-cumcj5a75cagsznpjrgretxdg6okxaur ==> Installing netcdf ==> Searching for binary cache of netcdf ==> Installing netcdf from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.4.1.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-netcdf-4.4.1.1-rmx4uppnhpv6kq7bh7r46zfqevgdkkgw.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.6.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-netcdf-4.6.1-wmmx5sgwfds34v7bkkhiduar5yecrnnd.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:49:38 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:24:01 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed netcdf from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.4.1.1-rmx4uppnhpv6kq7bh7r46zfqevgdkkgw + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.6.1-wmmx5sgwfds34v7bkkhiduar5yecrnnd ==> Installing parmetis ==> Searching for binary cache of parmetis ==> Installing parmetis from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-parmetis-4.0.3-qk77g6aiqr3f2hsykg54zzuhlxcpdcmv.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-parmetis-4.0.3-jehtatan4y2lcobj6waoqv66jj4libtz.spack ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:45:14 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:07:41 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed parmetis from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3-qk77g6aiqr3f2hsykg54zzuhlxcpdcmv - ==> suite-sparse is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/suite-sparse-4.5.5-bg67crx4ltmxulnumuxjxqzrcobpmyzg - ==> Installing superlu-dist - ==> Searching for binary cache of superlu-dist - ==> Installing superlu-dist from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/superlu-dist-5.2.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-superlu-dist-5.2.2-65vot2le3ezooz7tj6eveovly725o44x.spack - ######################################################################## 100.0% - gpg: Signature made Sat 11 Nov 2017 12:45:14 AM UTC using RSA key ID 3B7C69B2 - gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] - gpg: WARNING: This key is not certified with a trusted signature! - gpg: There is no indication that the signature belongs to the owner. - Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. - ==> Successfully installed superlu-dist from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/superlu-dist-5.2.2-65vot2le3ezooz7tj6eveovly725o44x + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3-jehtatan4y2lcobj6waoqv66jj4libtz + ==> suite-sparse is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/suite-sparse-5.3.0-zaau4kifha2enpdcn3mjlrqym7hm7yon ==> Installing trilinos ==> Searching for binary cache of trilinos ==> Installing trilinos from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-trilinos-12.12.1-xupifcp5d4f53cobm6g3xzao577uzezs.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-trilinos-12.12.1-kqc52moweigxqxzwzfqajc6ocxwdwn4w.spack ######################################################################## 100.0% - gpg: Signature made Sun 12 Nov 2017 12:04:58 AM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:30:15 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed trilinos from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1-xupifcp5d4f53cobm6g3xzao577uzezs + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1-kqc52moweigxqxzwzfqajc6ocxwdwn4w We see that every package in the trilinos DAG that depends on MPI now @@ -1193,47 +1262,47 @@ uses ``mpich``. .. code-block:: console $ spack find -d trilinos - ==> 2 installed packages. + ==> 2 installed packages -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- trilinos@12.12.1 - ^boost@1.65.1 + ^boost@1.68.0 ^bzip2@1.0.6 ^zlib@1.2.11 ^glm@0.9.7.1 - ^hdf5@1.10.1 - ^openmpi@3.0.0 - ^hwloc@1.11.8 + ^hdf5@1.10.4 + ^openmpi@3.1.3 + ^hwloc@1.11.9 ^libpciaccess@0.13.5 - ^libxml2@2.9.4 - ^xz@5.2.3 - ^hypre@2.12.1 - ^openblas@0.2.20 + ^libxml2@2.9.8 + ^xz@5.2.4 + ^numactl@2.0.11 + ^hypre@2.15.1 + ^openblas@0.3.3 ^matio@1.5.9 ^metis@5.1.0 ^mumps@5.1.1 ^netlib-scalapack@2.0.2 - ^netcdf@4.4.1.1 + ^netcdf@4.6.1 ^parmetis@4.0.3 - ^suite-sparse@4.5.5 - ^superlu-dist@5.2.2 + ^suite-sparse@5.3.0 trilinos@12.12.1 - ^boost@1.65.1 + ^boost@1.68.0 ^bzip2@1.0.6 ^zlib@1.2.11 ^glm@0.9.7.1 - ^hdf5@1.10.1 - ^mpich@3.2 - ^hypre@2.12.1 - ^openblas@0.2.20 + ^hdf5@1.10.4 + ^mpich@3.2.1 + ^hypre@2.15.1 + ^openblas@0.3.3 ^matio@1.5.9 ^metis@5.1.0 ^mumps@5.1.1 ^netlib-scalapack@2.0.2 - ^netcdf@4.4.1.1 + ^netcdf@4.6.1 ^parmetis@4.0.3 - ^suite-sparse@4.5.5 - ^superlu-dist@5.2.2 + ^suite-sparse@5.3.0 + As we discussed before, the ``spack find -d`` command shows the dependency information as a tree. While that is often sufficient, many @@ -1258,95 +1327,111 @@ command shows the full DAG of the dependency information. | | | | | | | | | | |\ | | | | | | | | | | | |\ | | | | | | | | | | | | |\ - | | | | | | | | | | | | | |\ - o | | | | | | | | | | | | | | superlu-dist - |\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ - | |_|/ / / / / / / / / / / / / - |/| | | | | | | | | | | | | | - | |\ \ \ \ \ \ \ \ \ \ \ \ \ \ - | | |_|/ / / / / / / / / / / / - | |/| | | | | | | | | | | | | - | | |\ \ \ \ \ \ \ \ \ \ \ \ \ - | | | |_|/ / / / / / / / / / / - | | |/| | | | | | | | | | | | - | | | | |_|_|/ / / / / / / / - | | | |/| | | | | | | | | | - | | | | o | | | | | | | | | suite-sparse - | | | |/| | | | | | | | | | - | | |/|/ / / / / / / / / / - o | | | | | | | | | | | | parmetis - |\| | | | | | | | | | | | - |\ \ \ \ \ \ \ \ \ \ \ \ \ - | |_|_|/ / / / / / / / / / - |/| | | | | | | | | | | | - | | |_|_|_|_|_|_|_|/ / / - | |/| | | | | | | | | | + o | | | | | | | | | | | | | suite-sparse + |\ \ \ \ \ \ \ \ \ \ \ \ \ \ + | |_|_|/ / / / / / / / / / / + |/| | | | | | | | | | | | | + | |\ \ \ \ \ \ \ \ \ \ \ \ \ + | | |_|_|_|_|_|/ / / / / / / + | |/| | | | | | | | | | | | + | | | |_|_|_|_|_|_|_|/ / / + | | |/| | | | | | | | | | + | | | o | | | | | | | | | parmetis + | | |/| | | | | | | | | | + | |/|/| | | | | | | | | | + | | | |/ / / / / / / / / | | | | | | o | | | | | mumps - | | | |_|_|/| | | | | | - | | |/| |_|/| | | | | | + | |_|_|_|_|/| | | | | | + |/| | | |_|/| | | | | | | | | |/| |/ / / / / / | | | | |/| | | | | | | | | | o | | | | | | netlib-scalapack - | | |_|/| | | | | | | - | |/| |/| | | | | | | + | |_|_|/| | | | | | | + |/| | |/| | | | | | | | | |/|/ / / / / / / - o | | | | | | | | | metis - |/ / / / / / / / / + | o | | | | | | | | metis + | |/ / / / / / / / | | | | | | | o | glm - | |_|_|_|_|_|/ / - |/| | | | | | | - o | | | | | | | cmake - |\ \ \ \ \ \ \ \ - o | | | | | | | | openssl - | | | | o | | | | netcdf - | |_|_|/| | | | | - |/| | |/| | | | | - | | |/| | | | | | - | | | | |\ \ \ \ \ - | | | | | | |_|/ / - | | | | | |/| | | - | | | | | | o | | matio - | |_|_|_|_|/| | | - |/| | | | |/ / / - | | | | | | o | hypre - | | | |_|_|/| | - | | |/| |_|/ / + | | |_|_|_|_|/ / + | |/| | | | | | + | o | | | | | | cmake + | |\ \ \ \ \ \ \ + | o | | | | | | | openssl + | |\ \ \ \ \ \ \ \ + | | | | | o | | | | netcdf + | | |_|_|/| | | | | + | |/| | |/| | | | | + | | | | | |\ \ \ \ \ + | | | | | | | |_|/ / + | | | | | | |/| | | + | | | | | | | o | | matio + | | |_|_|_|_|/| | | + | |/| | | | |/ / / + | | | | | | | o | hypre + | |_|_|_|_|_|/| | + |/| | | | |_|/ / + | | | | |/| | | + | | | | | | o | hdf5 + | | |_|_|_|/| | + | |/| | | |/ / + | | | | |/| | + | | | | o | | openmpi + | | |_|/| | | + | |/| | | | | + | | | | |\ \ \ + | | | | | o | | hwloc + | | | | |/| | | + | | | | | |\ \ \ + | | | | | | |\ \ \ + | | | | | | o | | | libxml2 + | | |_|_|_|/| | | | + | |/| | | |/| | | | + | | | | | | | | | o boost + | | |_|_|_|_|_|_|/| + | |/| | | | | | | | + | o | | | | | | | | zlib + | / / / / / / / / + | | | | | o | | | xz + | | | | | / / / + | | | | | o | | libpciaccess + | | | | |/| | | + | | | | | |\ \ \ + | | | | | o | | | util-macros + | | | | | / / / + | | | o | | | | numactl + | | | |\ \ \ \ \ + | | | | |_|_|/ / + | | | |/| | | | + | | | | |\ \ \ \ + | | | | | |_|/ / + | | | | |/| | | + | | | | | |\ \ \ + | | | | | o | | | automake + | | |_|_|/| | | | + | |/| | | | | | | + | | | | | |/ / / + | | | | | o | | autoconf + | | |_|_|/| | | + | |/| | |/ / / | | | |/| | | - | | | | | o | hdf5 - | |_|_|_|/| | - |/| | |_|/ / - | | |/| | | - | | o | | | openmpi - | | o | | | hwloc - | | |\ \ \ \ - | | | |\ \ \ \ - | | | o | | | | libxml2 - | |_|/| | | | | - |/| |/| | | | | - | | | | | | | o boost - | |_|_|_|_|_|/| - |/| | | | | | | - o | | | | | | | zlib - / / / / / / / - | | o | | | | xz - | | / / / / - | | o | | | libpciaccess - | |/| | | | - | | |\ \ \ \ - | | o | | | | util-macros - | | / / / / - o | | | | | ncurses - |/ / / / / - o | | | | pkg-config - / / / / - | o | | openblas - | / / - o | | libtool - |/ / - o | m4 - o | libsigsegv - / - o bzip2 + | o | | | | | perl + | o | | | | | gdbm + | o | | | | | readline + | |/ / / / / + | o | | | | ncurses + | | |_|/ / + | |/| | | + | o | | | pkgconf + | / / / + o | | | openblas + / / / + | o | libtool + |/ / + o | m4 + o | libsigsegv + / + o bzip2 + o diffutils You can control how the output is displayed with a number of options. @@ -1364,25 +1449,27 @@ complicated packages. The output can be changed to the ``graphviz`` Uninstalling Packages --------------------- -Earlier we installed many configurations each of zlib and -openssl. Now we will go through and uninstall some of those packages -that we didn't really need. +Earlier we installed many configurations each of zlib and tcl. Now we +will go through and uninstall some of those packages that we didn't +really need. .. code-block:: console - $ spack find -d openssl - ==> 3 installed packages. + $ spack find -d tcl + ==> 3 installed packages -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- - openssl@1.0.2k + tcl@8.6.8 ^zlib@1.2.8 + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- - openssl@1.0.2k + tcl@8.6.8 ^zlib@1.2.8 - openssl@1.0.2k + tcl@8.6.8 ^zlib@1.2.11 + $ spack find zlib ==> 6 installed packages. -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- @@ -1411,15 +1498,12 @@ We can uninstall packages by spec using the same syntax as install. ==> 5 installed packages. -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- i426yu3 zlib@1.2.8%clang - 4pt75q7 zlib@1.2.11%clang -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- bkyl5bh zlib@1.2.8%gcc - 64mns5m zlib@1.2.8%gcc cppflags="-O3" - 5nus6kn zlib@1.2.11%gcc We can also uninstall packages by referring only to their hash. @@ -1433,22 +1517,19 @@ remove packages that are required by another installed package. ==> Error: Will not uninstall zlib@1.2.8%clang@3.8.0-2ubuntu4/i426yu3 The following packages depend on it: - -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- - ufruk7k openssl@1.0.2k%clang - + -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- + 6wc66et tcl@8.6.8%clang ==> Error: Use \`spack uninstall --dependents\` to uninstall these dependencies as well. $ spack uninstall -R zlib/i426 ==> The following packages will be uninstalled: - -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- - ufruk7k openssl@1.0.2k%clang - - i426yu3 zlib@1.2.8%clang+optimize+pic+shared - + -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- + 6wc66et tcl@8.6.8%clang + i426yu3 zlib@1.2.8%clang+optimize+pic+shared ==> Do you want to proceed? [y/N] y - ==> Successfully uninstalled openssl@1.0.2k%clang@3.8.0-2ubuntu4 arch=linux-ubuntu16.04-x86_64 /ufruk7k + ==> Successfully uninstalled tcl@8.6.8%clang@3.8.0-2ubuntu4 arch=linux-ubuntu16.04-x86_64 /6wc66et ==> Successfully uninstalled zlib@1.2.8%clang@3.8.0-2ubuntu4+optimize+pic+shared arch=linux-ubuntu16.04-x86_64 /i426yu3 Spack will not uninstall packages that are not sufficiently @@ -1460,25 +1541,22 @@ packages at once. $ spack uninstall trilinos ==> Error: trilinos matches multiple packages: - -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- - istwe3b trilinos@12.12.1%gcc~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~dtk+epetra+epetraext+exodus+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2+instantiate~instantiate_cmplx~intrepid~intrepid2+metis+ml+muelu+mumps~nox~openmp~pnetcdf~python~rol+sacado~shards+shared~stk+suite-sparse~superlu+superlu-dist+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2 - - xupifcp trilinos@12.12.1%gcc~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~dtk+epetra+epetraext+exodus+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2+instantiate~instantiate_cmplx~intrepid~intrepid2+metis+ml+muelu+mumps~nox~openmp~pnetcdf~python~rol+sacado~shards+shared~stk+suite-sparse~superlu+superlu-dist+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2 - + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + rlsruav trilinos@12.12.1%gcc~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~cgns~complex~dtk+epetra+epetraext+exodus+explicit_template_instantiation~float+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2~intrepid~intrepid2~isorropia+kokkos+metis~minitensor+ml+muelu+mumps~nox~openmp~phalanx~piro~pnetcdf~python~rol~rythmos+sacado~shards+shared~stk+suite-sparse~superlu~superlu-dist~teko~tempus+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2 + kqc52mo trilinos@12.12.1%gcc~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~cgns~complex~dtk+epetra+epetraext+exodus+explicit_template_instantiation~float+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2~intrepid~intrepid2~isorropia+kokkos+metis~minitensor+ml+muelu+mumps~nox~openmp~phalanx~piro~pnetcdf~python~rol~rythmos+sacado~shards+shared~stk+suite-sparse~superlu~superlu-dist~teko~tempus+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2 ==> Error: You can either: a) use a more specific spec, or b) use `spack uninstall --all` to uninstall ALL matching specs. - $ spack uninstall /istw + $ spack uninstall /rlsr ==> The following packages will be uninstalled: - -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- - istwe3b trilinos@12.12.1%gcc~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~dtk+epetra+epetraext+exodus+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2+instantiate~instantiate_cmplx~intrepid~intrepid2+metis+ml+muelu+mumps~nox~openmp~pnetcdf~python~rol+sacado~shards+shared~stk+suite-sparse~superlu+superlu-dist+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2 - + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + rlsruav trilinos@12.12.1%gcc~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~cgns~complex~dtk+epetra+epetraext+exodus+explicit_template_instantiation~float+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2~intrepid~intrepid2~isorropia+kokkos+metis~minitensor+ml+muelu+mumps~nox~openmp~phalanx~piro~pnetcdf~python~rol~rythmos+sacado~shards+shared~stk+suite-sparse~superlu~superlu-dist~teko~tempus+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2 ==> Do you want to proceed? [y/N] y - ==> Successfully uninstalled trilinos@12.12.1%gcc@5.4.0~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~dtk+epetra+epetraext+exodus+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2+instantiate~instantiate_cmplx~intrepid~intrepid2+metis+ml+muelu+mumps~nox~openmp~pnetcdf~python~rol+sacado~shards+shared~stk+suite-sparse~superlu+superlu-dist+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2 arch=linux-ubuntu16.04-x86_64 /istwe3b + ==> Successfully uninstalled trilinos@12.12.1%gcc@5.4.0~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~cgns~complex~dtk+epetra+epetraext+exodus+explicit_template_instantiation~float+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2~intrepid~intrepid2~isorropia+kokkos+metis~minitensor+ml+muelu+mumps~nox~openmp~phalanx~piro~pnetcdf~python~rol~rythmos+sacado~shards+shared~stk+suite-sparse~superlu~superlu-dist~teko~tempus+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2 arch=linux-ubuntu16.04-x86_64 /rlsruav ----------------------------- Advanced ``spack find`` Usage @@ -1497,10 +1575,10 @@ return every package which was built with ``cppflags="-O3"``. .. code-block:: console $ spack find ^mpich - ==> 9 installed packages. + ==> 8 installed packages -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- - hdf5@1.10.1 hypre@2.12.1 matio@1.5.9 mumps@5.1.1 netcdf@4.4.1.1 netlib-scalapack@2.0.2 parmetis@4.0.3 superlu-dist@5.2.2 trilinos@12.12.1 - + hdf5@1.10.4 matio@1.5.9 netcdf@4.6.1 parmetis@4.0.3 + hypre@2.15.1 mumps@5.1.1 netlib-scalapack@2.0.2 trilinos@12.12.1 $ spack find cppflags=-O3 ==> 1 installed packages. @@ -1508,28 +1586,28 @@ return every package which was built with ``cppflags="-O3"``. zlib@1.2.8 The ``find`` command can also show which packages were installed -explicitly (rather than pulled in as a dependency) using the ``-e`` -flag. The ``-E`` flag shows implicit installs only. The ``find`` command can +explicitly (rather than pulled in as a dependency) using the ``-x`` +flag. The ``-X`` flag shows implicit installs only. The ``find`` command can also show the path to which a spack package was installed using the ``-p`` command. .. code-block:: console - $ spack find -pe - ==> 10 installed packages. + $ spack find -px + ==> 10 installed packages -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- - zlib@1.2.11 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.11-4pt75q7qq6lygf3hgnona4lyc2uwedul + zlib@1.2.11 /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.11-4pt75q7qq6lygf3hgnona4lyc2uwedul -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- - hdf5@1.10.1 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-pa6oqzfeqzkqkzqr2375fqyt3qggx3tr - hdf5@1.10.1 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-bovz45ms24pmfr7hlckf56bxegfc4rea - hdf5@1.10.1 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-e4gz6f2l5ik3ijuk3alwsqplex4tbvin - openssl@1.0.2k /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-gyxmhgbam26d7y42omb7xrvkjjgmzwio - openssl@1.0.2k /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom - trilinos@12.12.1 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1-xupifcp5d4f53cobm6g3xzao577uzezs - zlib@1.2.8 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-bkyl5bhuep6fmhuxzkmhqy25qefjcvzc - zlib@1.2.8 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu - zlib@1.2.11 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + hdf5@1.10.4 /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.4-5vcv5r67vpjzenq4apyebshclelnzuja + hdf5@1.10.4 /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.4-ozyvmhzdew66byarohm4p36ep7wtcuiw + hdf5@1.10.4 /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.4-xxd7syhgej6onpyfyewxqcqe7ltkt7ob + tcl@8.6.8 /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/tcl-8.6.8-am4pbatrtga3etyusg2akmsvrswwxno2 + tcl@8.6.8 /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/tcl-8.6.8-qhwyccywhx2i6s7ob2gvjrjtj3rnfuqt + trilinos@12.12.1 /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1-kqc52moweigxqxzwzfqajc6ocxwdwn4w + zlib@1.2.8 /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-bkyl5bhuep6fmhuxzkmhqy25qefjcvzc + zlib@1.2.8 /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu + zlib@1.2.11 /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb --------------------- Customizing Compilers @@ -1557,175 +1635,86 @@ added to the configuration. .. code-block:: console - $ spack install --use-cache gcc - ==> libsigsegv is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz - ==> m4 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-r5envx3kqctwwflhd4qax4ahqtt6x43a - ==> pkg-config is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkg-config-0.29.2-ae2hwm7q57byfbxtymts55xppqwk7ecj - ==> ncurses is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.0-ukq4tccptm2rxd56d2bumqthnpcjzlez - ==> Installing readline - ==> Searching for binary cache of readline - ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-matio-1.5.9-3ibrutc6cs7x6ybyt5ni5n6djtq5okm2.spec.yaml - ######################################################################## 100.0% - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-trilinos-12.12.1-xupifcp5d4f53cobm6g3xzao577uzezs.spec.yaml - ######################################################################## 100.0% - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-parmetis-4.0.3-qk77g6aiqr3f2hsykg54zzuhlxcpdcmv.spec.yaml - ######################################################################## 100.0% - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-superlu-dist-5.2.2-65vot2le3ezooz7tj6eveovly725o44x.spec.yaml - ######################################################################## 100.0% - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-hypre-2.12.1-3psjg2ka2qa26jtgitlil4vglqr67anj.spec.yaml - ######################################################################## 100.0% - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-mumps-5.1.1-phvk6yhkzqed6gjsbah6dnhlesdclild.spec.yaml - ######################################################################## 100.0% - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-netcdf-4.4.1.1-rmx4uppnhpv6kq7bh7r46zfqevgdkkgw.spec.yaml - ######################################################################## 100.0% - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-netlib-scalapack-2.0.2-km7tsbgoyyywonyejkjoojskhc5knz3z.spec.yaml - ######################################################################## 100.0% - ==> Installing readline from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/readline-7.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-readline-7.0-gizxpch53zv5ufa62a2tb5lalcqgxbuc.spack - ######################################################################## 100.0% - gpg: Signature made Sun 12 Nov 2017 10:26:53 PM UTC using RSA key ID 3B7C69B2 - gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] - gpg: WARNING: This key is not certified with a trusted signature! - gpg: There is no indication that the signature belongs to the owner. - Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. - ==> Successfully installed readline from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/readline-7.0-gizxpch53zv5ufa62a2tb5lalcqgxbuc - ==> Installing gdbm - ==> Searching for binary cache of gdbm - ==> Installing gdbm from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/gdbm-1.13/linux-ubuntu16.04-x86_64-gcc-5.4.0-gdbm-1.13-vdhoris6wdzzb2ykax2hz7qzgizk5h3t.spack - ######################################################################## 100.0% - gpg: Signature made Sun 12 Nov 2017 10:26:51 PM UTC using RSA key ID 3B7C69B2 - gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] - gpg: WARNING: This key is not certified with a trusted signature! - gpg: There is no indication that the signature belongs to the owner. - Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. - ==> Successfully installed gdbm from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gdbm-1.13-vdhoris6wdzzb2ykax2hz7qzgizk5h3t - ==> Installing perl - ==> Searching for binary cache of perl - ==> Installing perl from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/perl-5.24.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-perl-5.24.1-mfzwy6y5mlbqpqvti4etpe3cgkmxkpi2.spack - ######################################################################## 100.0% - gpg: Signature made Sun 12 Nov 2017 10:27:19 PM UTC using RSA key ID 3B7C69B2 - gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] - gpg: WARNING: This key is not certified with a trusted signature! - gpg: There is no indication that the signature belongs to the owner. - Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. - ==> Successfully installed perl from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/perl-5.24.1-mfzwy6y5mlbqpqvti4etpe3cgkmxkpi2 - ==> Installing autoconf - ==> Searching for binary cache of autoconf - ==> Installing autoconf from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/autoconf-2.69/linux-ubuntu16.04-x86_64-gcc-5.4.0-autoconf-2.69-bvabhjiklhi7c5742ixzs7hubhid3ax2.spack - ######################################################################## 100.0% - gpg: Signature made Sun 12 Nov 2017 10:27:22 PM UTC using RSA key ID 3B7C69B2 - gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] - gpg: WARNING: This key is not certified with a trusted signature! - gpg: There is no indication that the signature belongs to the owner. - Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. - ==> Successfully installed autoconf from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/autoconf-2.69-bvabhjiklhi7c5742ixzs7hubhid3ax2 - ==> Installing automake - ==> Searching for binary cache of automake - ==> Installing automake from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/automake-1.15.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-automake-1.15.1-kaiefe4j2lsq6b32ncrclmbeoa5z25a5.spack - ######################################################################## 100.0% - gpg: Signature made Sun 12 Nov 2017 10:27:21 PM UTC using RSA key ID 3B7C69B2 - gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] - gpg: WARNING: This key is not certified with a trusted signature! - gpg: There is no indication that the signature belongs to the owner. - Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. - ==> Successfully installed automake from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/automake-1.15.1-kaiefe4j2lsq6b32ncrclmbeoa5z25a5 - ==> libtool is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu + $ spack install gcc + ==> libsigsegv is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz + ==> m4 is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-suf5jtcfehivwfesrc5hjy72r4nukyel + ==> pkgconf is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkgconf-1.4.2-fovrh7alpft646n6mhis5mml6k6e5f4v + ==> ncurses is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.1-3o765ourmesfrji6yeclb4wb5w54aqbh + ==> readline is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/readline-7.0-nxhwrg7xwc6nbsm2v4ezwe63l6nfidbi + ==> gdbm is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gdbm-1.14.1-q4fpyuo7ouhkeq6d3oabtrppctpvxmes + ==> perl is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/perl-5.26.2-ic2kyoadgp3dxfejcbllyplj2wf524fo + ==> autoconf is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/autoconf-2.69-3sx2gxeibc4oasqd4o5h6lnwpcpsgd2q + ==> automake is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/automake-1.16.1-rymw7imfehycqxzj4nuy2oiw3abegooy + ==> libtool is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu ==> Installing gmp ==> Searching for binary cache of gmp + ==> Finding buildcaches in /mirror/build_cache ==> Installing gmp from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/gmp-6.1.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-gmp-6.1.2-qc4qcfz4monpllc3nqupdo7vwinf73sw.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/gmp-6.1.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-gmp-6.1.2-qc4qcfz4monpllc3nqupdo7vwinf73sw.spack ######################################################################## 100.0% - gpg: Signature made Sun 12 Nov 2017 10:12:29 PM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:18:16 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed gmp from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gmp-6.1.2-qc4qcfz4monpllc3nqupdo7vwinf73sw + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gmp-6.1.2-qc4qcfz4monpllc3nqupdo7vwinf73sw ==> Installing isl ==> Searching for binary cache of isl ==> Installing isl from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/isl-0.18/linux-ubuntu16.04-x86_64-gcc-5.4.0-isl-0.18-vttqoutnsmjpm3ogb52rninksc7hq5ax.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/isl-0.18/linux-ubuntu16.04-x86_64-gcc-5.4.0-isl-0.18-vttqoutnsmjpm3ogb52rninksc7hq5ax.spack ######################################################################## 100.0% - gpg: Signature made Sun 12 Nov 2017 10:12:28 PM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:05:19 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed isl from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/isl-0.18-vttqoutnsmjpm3ogb52rninksc7hq5ax + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/isl-0.18-vttqoutnsmjpm3ogb52rninksc7hq5ax ==> Installing mpfr ==> Searching for binary cache of mpfr ==> Installing mpfr from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpfr-3.1.5/linux-ubuntu16.04-x86_64-gcc-5.4.0-mpfr-3.1.5-mdi6irzvxcbemt7yredzr36dvo6ty4sl.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpfr-3.1.6/linux-ubuntu16.04-x86_64-gcc-5.4.0-mpfr-3.1.6-jnt2nnp5pmvikbw7opueajlbwbhmjxyv.spack ######################################################################## 100.0% - gpg: Signature made Sun 12 Nov 2017 10:12:30 PM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:32:07 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed mpfr from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpfr-3.1.5-mdi6irzvxcbemt7yredzr36dvo6ty4sl + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpfr-3.1.6-jnt2nnp5pmvikbw7opueajlbwbhmjxyv ==> Installing mpc ==> Searching for binary cache of mpc ==> Installing mpc from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpc-1.0.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-mpc-1.0.3-tumbpshu5hjxwextoudk5hmic6nspb3z.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpc-1.1.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-mpc-1.1.0-iuf3gc3zpgr4n4mditnxhff6x3joxi27.spack ######################################################################## 100.0% - gpg: Signature made Sun 12 Nov 2017 10:12:29 PM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:30:35 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed mpc from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpc-1.0.3-tumbpshu5hjxwextoudk5hmic6nspb3z - ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb - ==> Installing gcc + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpc-1.1.0-iuf3gc3zpgr4n4mditnxhff6x3joxi27 + ==> zlib is already installed in /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + Installing gcc ==> Searching for binary cache of gcc + ==> Finding buildcaches in /mirror/build_cache ==> Installing gcc from binary cache - ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-gcc-7.2.0-k3vy57euyeuyvpotwf4wezfmpo3mrtrj.spack + ==> Fetching file:///mirror/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-gcc-7.2.0-b7smjjcsmwe5u5fcsvjmonlhlzzctnfs.spack ######################################################################## 100.0% - gpg: Signature made Sun 12 Nov 2017 10:16:31 PM UTC using RSA key ID 3B7C69B2 + gpg: Signature made Sat Nov 10 05:22:47 2018 UTC using RSA key ID 3B7C69B2 gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 - ==> Relocating package from - /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. ==> Successfully installed gcc from binary cache - [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-k3vy57euyeuyvpotwf4wezfmpo3mrtrj + [+] /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-b7smjjcsmwe5u5fcsvjmonlhlzzctnfs $ spack find -p gcc - ==> 1 installed packages. + spack find -p gcc + ==> 1 installed package -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- - gcc@7.2.0 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-k3vy57euyeuyvpotwf4wezfmpo3mrtrj + gcc@7.2.0 /home/spack1/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-b7smjjcsmwe5u5fcsvjmonlhlzzctnfs We can add gcc to Spack as an available compiler using the ``spack compiler add`` command. This will allow future packages to build with @@ -1733,7 +1722,7 @@ gcc@7.2.0. .. code-block:: console - $ spack compiler add /home/ubuntu/becker/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-k3vy57euyeuyvpotwf4wezfmpo3mrtrj + $ spack compiler add `spack location -i gcc@7.2.0` ==> Added 1 new compiler to /home/ubuntu/.spack/linux/compilers.yaml gcc@7.2.0 ==> Compilers are defined in the following files: |