diff options
Diffstat (limited to 'lib')
| -rw-r--r-- | lib/spack/docs/tutorial_basics.rst | 2121 |
1 files changed, 1308 insertions, 813 deletions
diff --git a/lib/spack/docs/tutorial_basics.rst b/lib/spack/docs/tutorial_basics.rst index 5df4179952..d74159d7f6 100644 --- a/lib/spack/docs/tutorial_basics.rst +++ b/lib/spack/docs/tutorial_basics.rst @@ -4,17 +4,17 @@ Basic Installation Tutorial ========================================= -This tutorial will guide you through the process of installing software -using Spack. We will first cover the `spack install` command, focusing on -the power of the spec syntax and the flexibility it gives to users. We -will also cover the `spack find` command for viewing installed packages -and the `spack uninstall` command. Finally, we will touch on how Spack -manages compilers, especially as it relates to using Spack-built -compilers within Spack. We will include full output from all of the -commands demonstrated, although we will frequently call attention to only -small portions of that output (or merely to the fact that it -succeeded). The provided output is all from a cluster running Red Hat -Enterprise Linux. +This tutorial will guide you through the process of installing +software using Spack. We will first cover the `spack install` command, +focusing on the power of the spec syntax and the flexibility it gives +to users. We will also cover the `spack find` command for viewing +installed packages and the `spack uninstall` command. Finally, we will +touch on how Spack manages compilers, especially as it relates to +using Spack-built compilers within Spack. We will include full output +from all of the commands demonstrated, although we will frequently +call attention to only small portions of that output (or merely to the +fact that it succeeded). The provided output is all from an AWS +instance running Ubuntu 16.04 .. _basics-tutorial-install: @@ -22,24 +22,31 @@ Enterprise Linux. Installing Spack ---------------- -Spack works out of the box. Simply clone spack and get going. +Spack works out of the box. Simply clone spack and get going. We will +clone Spack and immediately checkout the most recent release, v0.11.0. .. code-block:: console - $ git clone https://github.com/spack/spack.git - Initialized empty Git repository in ~/spack/.git/ - remote: Counting objects: 47125, done. - remote: Compressing objects: 100% (68/68), done. - remote: Total 47125 (delta 16), reused 2 (delta 2), pack-reused 47047 - Receiving objects: 100% (47125/47125), 12.02 MiB | 2.11 MiB/s, done. - Resolving deltas: 100% (23044/23044), done. + $ git clone https://github.com/spack/spack + Cloning into 'spack'... + remote: Counting objects: 94561, done. + remote: Compressing objects: 100% (121/121), done. + remote: Total 94561 (delta 91), reused 121 (delta 48), pack-reused 94368 + Receiving objects: 100% (94561/94561), 32.44 MiB | 31.88 MiB/s, done. + Resolving deltas: 100% (44914/44914), done. + Checking connectivity... done. $ cd spack + $ git checkout releases/v0.11.0 + Branch releases/v0.11.0 set up to track remote branch releases/v0.11.0 from origin. + Switched to a new branch 'releases/v0.11.0' -Then add Spack to your path. +Next add Spack to your path. Spack has some nice command line +integration tools, so instead of simply appending to your ``PATH`` +variable, source the spack setup script. Then add Spack to your path. .. code-block:: console - $ export PATH=~/spack/bin:$PATH + $ . share/spack/setup-env.sh You're good to go! @@ -52,10 +59,10 @@ The ``spack list`` command shows available packages. .. code-block:: console $ spack list - ==> 1016 packages. - abinit hwloc piranha r-rjava - ack hydra pixman r-rjson - activeharmony hypre pkg-config r-rjsonio + ==> 2177 packages. + abinit libepoxy py-html5lib r-ncdf4 + abyss libevent py-httpbin r-network + ack libevpath py-hypothesis r-networkd3abinit ... The ``spack list`` command can also take a query string. Spack @@ -64,11 +71,11 @@ we can view all available python packages. .. code-block:: console - $ spack list py - ==> 129 packages. - py-3to2 py-epydoc py-nestle py-pycparser py-six - py-alabaster py-flake8 py-netcdf py-pydatalog py-sncosmo - py-argcomplete py-funcsigs py-networkx py-pyelftools py-snowballstemmer + $ spack list py- + ==> 356 packages. + py-3to2 py-functools32 py-numpydoc py-pywavelets + py-4suite-xml py-future py-olefile py-pyyaml + py-abipy py-futures py-ont-fast5-api py-qtawesome ... ------------------- @@ -76,26 +83,50 @@ Installing Packages ------------------- Installing a package with Spack is very simple. To install a piece of -software, simply type ``spack install <package_name>`` +software, simply type ``spack install <package_name>``. .. code-block:: console - $ spack install libelf - ==> Installing libelf - ==> Trying to fetch from ~/spack/var/spack/cache/libelf/libelf-0.8.13.tar.gz - curl: (37) Couldn't open file ~/spack/var/spack/cache/libelf/libelf-0.8.13.tar.gz - ==> Fetching from ~/spack/var/spack/cache/libelf/libelf-0.8.13.tar.gz failed. - ==> Trying to fetch from http://www.mr511.de/software/libelf-0.8.13.tar.gz - ################################################################################################################################################################################# 100.0% - ==> Staging archive: ~/spack/var/spack/stage/libelf-0.8.13-csrt4qxfkhjgn5xg3zjpkir7xdnszl2a/libelf-0.8.13.tar.gz - ==> Created stage in ~/spack/var/spack/stage/libelf-0.8.13-csrt4qxfkhjgn5xg3zjpkir7xdnszl2a - ==> No patches needed for libelf - ==> Building libelf [Package] - ==> Executing phase : 'install' - ==> Successfully installed libelf - Fetch: 1.21s. Build: 8.42s. Total: 9.62s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.13-csrt4qxfkhjgn5xg3zjpkir7xdnszl2a + $ spack install zlib + ==> Installing zlib + ==> Fetching file:///home/ubuntu/becker/buildcache/zlib/zlib-1.2.11.tar.gz + curl: (37) Couldn't open file /home/ubuntu/becker/buildcache/zlib/zlib-1.2.11.tar.gz + ==> Fetching from file:///home/ubuntu/becker/buildcache/zlib/zlib-1.2.11.tar.gz failed. + ==> Fetching http://zlib.net/fossils/zlib-1.2.11.tar.gz + ######################################################################## 100.0% + ==> Staging archive: /home/ubuntu/test/spack/var/spack/stage/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb/zlib-1.2.11.tar.gz + ==> Created stage in /home/ubuntu/test/spack/var/spack/stage/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + ==> No patches needed for zlib + ==> Building zlib [Package] + ==> Executing phase: 'install' + ==> Successfully installed zlib + Fetch: 0.58s. Build: 1.15s. Total: 1.73s. + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + +Spack can install software either from source or from a binary +cache. Packages in the binary cache are signed with GPG for +security. For the tutorial we have prepared a binary cache so you +don't have to wait on slow compilation from source. To be able to +install from the binary cache, we will need to trust the GPG key that +the binary cache was prepared with. +.. code-block:: console + + $ spack gpg trust ~/public.key + gpg: keybox '/home/ubuntu/test/spack/opt/spack/gpg/pubring.kbx' created + gpg: /home/ubuntu/test/spack/opt/spack/gpg/trustdb.gpg: trustdb created + gpg: key 3B7C69B2: public key "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" imported + gpg: Total number processed: 1 + gpg: imported: 1 + +The AWS instances and Docker images we use for the tutorial already +have configuration files in place so that Spack knows where to look +for binary packages (and that's the only change we've made). You'll +learn more about configuring Spack later in the tutorial, but for now +you will be able to install the rest of the packages in the tutorial +from a binary cache by specifying ``spack install --use-cache +<package_name>``. This will install the binary cached version if it +exists and fall back on installing from source. Spack's spec syntax is the interface by which we can request specific configurations of the package. The ``%`` sigil is used to specify @@ -103,18 +134,24 @@ compilers. .. code-block:: console - $ spack install libelf %intel - ==> Installing libelf - ==> Trying to fetch from ~/spack/var/spack/cache/libelf/libelf-0.8.13.tar.gz - ################################################################################################################################################################################# 100.0% - ==> Staging archive: ~/spack/var/spack/stage/libelf-0.8.13-7wgp32xksatkvw2tbssmehw2t5tnxndj/libelf-0.8.13.tar.gz - ==> Created stage in ~/spack/var/spack/stage/libelf-0.8.13-7wgp32xksatkvw2tbssmehw2t5tnxndj - ==> No patches needed for libelf - ==> Building libelf [Package] - ==> Executing phase : 'install' - ==> Successfully installed libelf - Fetch: 0.09s. Build: 50.64s. Total: 50.72s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/intel-16.0.3/libelf-0.8.13-7wgp32xksatkvw2tbssmehw2t5tnxndj + $ spack install --use-cache zlib %clang + ... + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-4.7-libsigsegv-2.11-eaqxu5mka32jpjif32rttiwebimrr2kb.spec.yaml + ######################################################################## 100.0% + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr.spec.yaml + ######################################################################## 100.0% + ==> Installing zlib from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.11/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-zlib-1.2.11-4pt75q7qq6lygf3hgnona4lyc2uwedul.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 01:05:02 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed zlib from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.11-4pt75q7qq6lygf3hgnona4lyc2uwedul Note that this installation is located separately from the previous one. We will discuss this in more detail later, but this is part of what @@ -122,67 +159,59 @@ allows Spack to support arbitrarily versioned software. You can check for particular versions before requesting them. We will use the ``spack versions`` command to see the available versions, and then -install a different version of ``libelf``. +install a different version of ``zlib``. .. code-block:: console - $ spack versions libelf + $ spack versions zlib ==> Safe versions (already checksummed): - 0.8.13 - 0.8.12 + 1.2.11 1.2.8 1.2.3 ==> Remote versions (not yet checksummed): - 0.8.11 - 0.8.10 - 0.8.9 - 0.8.8 - 0.8.7 - 0.8.6 - 0.8.5 - 0.8.4 - 0.8.3 - 0.8.2 - 0.8.0 - 0.7.0 - 0.6.4 - 0.5.2 - + 1.2.10 1.2.7 1.2.5.1 1.2.4.2 1.2.3.7 + ... The ``@`` sigil is used to specify versions, both of packages and of compilers. .. code-block:: console - $ spack install libelf @0.8.12 - ==> Installing libelf - ==> Trying to fetch from ~/spack/var/spack/cache/libelf/libelf-0.8.12.tar.gz - curl: (37) Couldn't open file ~/spack/var/spack/cache/libelf/libelf-0.8.12.tar.gz - ==> Fetching from ~/spack/var/spack/cache/libelf/libelf-0.8.12.tar.gz failed. - ==> Trying to fetch from http://www.mr511.de/software/libelf-0.8.12.tar.gz - ################################################################################################################################################################################# 100.0% - ==> Staging archive: ~/spack/var/spack/stage/libelf-0.8.12-ipggckv6i7h44iryzfa4dwdela32a7fy/libelf-0.8.12.tar.gz - ==> Created stage in ~/spack/var/spack/stage/libelf-0.8.12-ipggckv6i7h44iryzfa4dwdela32a7fy - ==> No patches needed for libelf - ==> Building libelf [Package] - ==> Executing phase : 'install' - ==> Successfully installed libelf - Fetch: 1.12s. Build: 7.88s. Total: 9.00s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.12-ipggckv6i7h44iryzfa4dwdela32a7fy - - - - $ spack install libelf %intel@15.0.4 - ==> Installing libelf - ==> Trying to fetch from ~/spack/var/spack/cache/libelf/libelf-0.8.13.tar.gz - ################################################################################################################################################################################# 100.0% - ==> Staging archive: ~/spack/var/spack/stage/libelf-0.8.13-w33hrejdyqu2j2gggdswitls2zv6kdsi/libelf-0.8.13.tar.gz - ==> Created stage in ~/spack/var/spack/stage/libelf-0.8.13-w33hrejdyqu2j2gggdswitls2zv6kdsi - ==> No patches needed for libelf - ==> Building libelf [Package] - ==> Executing phase : 'install' - ==> Successfully installed libelf - Fetch: 0.09s. Build: 55.51s. Total: 55.60s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/intel-15.0.4/libelf-0.8.13-w33hrejdyqu2j2gggdswitls2zv6kdsi - + $ spack install --use-cache zlib@1.2.8 + ==> Installing zlib + ==> Searching for binary cache of zlib + ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-zlib-1.2.11-4pt75q7qq6lygf3hgnona4lyc2uwedul.spec.yaml + ######################################################################## 100.0% + ==> Installing zlib from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8/linux-ubuntu16.04-x86_64-gcc-5.4.0-zlib-1.2.8-bkyl5bhuep6fmhuxzkmhqy25qefjcvzc.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 01:05:03 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed zlib from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-bkyl5bhuep6fmhuxzkmhqy25qefjcvzc + + $ spack install --use-cache zlib %gcc@4.7 + ==> Installing zlib + ==> Searching for binary cache of zlib + ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-zlib-1.2.8-bkyl5bhuep6fmhuxzkmhqy25qefjcvzc.spec.yaml + ######################################################################## 100.0% + ==> Installing zlib from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-4.7/zlib-1.2.11/linux-ubuntu16.04-x86_64-gcc-4.7-zlib-1.2.11-bq2wtdxakpjytk2tjr7qu23i4py2fi2r.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 01:03:00 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed zlib from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-4.7/zlib-1.2.11-bq2wtdxakpjytk2tjr7qu23i4py2fi2r The spec syntax also includes compiler flags. Spack accepts ``cppflags``, ``cflags``, ``cxxflags``, ``fflags``, ``ldflags``, and @@ -192,19 +221,24 @@ into the compile line automatically by the Spack compiler wrappers. .. code-block:: console - $ spack install libelf @0.8.12 cppflags="-O3" - ==> Installing libelf - ==> Trying to fetch from ~/spack/var/spack/cache/libelf/libelf-0.8.12.tar.gz - ################################################################################################################################################################################# 100.0% - ==> Staging archive: ~/spack/var/spack/stage/libelf-0.8.12-vrv2ttbd34xlfoxy4jwt6qsjrcbalmmw/libelf-0.8.12.tar.gz - ==> Created stage in ~/spack/var/spack/stage/libelf-0.8.12-vrv2ttbd34xlfoxy4jwt6qsjrcbalmmw - ==> No patches needed for libelf - ==> Building libelf [Package] - ==> Executing phase : 'install' - ==> Successfully installed libelf - Fetch: 0.04s. Build: 7.95s. Total: 7.99s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.12-vrv2ttbd34xlfoxy4jwt6qsjrcbalmmw - + $ spack install --use-cache zlib @1.2.8 cppflags=-O3 + ==> Installing zlib + ==> Searching for binary cache of zlib + ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-4.7-zlib-1.2.11-bq2wtdxakpjytk2tjr7qu23i4py2fi2r.spec.yaml + ######################################################################## 100.0% + ==> Installing zlib from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8/linux-ubuntu16.04-x86_64-gcc-5.4.0-zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 01:03:00 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed zlib from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu The ``spack find`` command is used to query installed packages. Note that some packages appear identical with the default output. The ``-l`` flag @@ -215,36 +249,32 @@ compiler flags of those packages. $ spack find ==> 5 installed packages. - -- linux-redhat6-x86_64 / gcc@4.4.7 ----------------------------- - libelf@0.8.12 - libelf@0.8.12 - libelf@0.8.13 - - -- linux-redhat6-x86_64 / intel@15.0.4 -------------------------- - libelf@0.8.13 + -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- + zlib@1.2.11 - -- linux-redhat6-x86_64 / intel@16.0.3 -------------------------- - libelf@0.8.13 + -- linux-ubuntu16.04-x86_64 / gcc@4.7 --------------------------- + zlib@1.2.11 + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + zlib@1.2.8 zlib@1.2.8 zlib@1.2.11 $ spack find -lf ==> 5 installed packages. - -- linux-redhat6-x86_64 / gcc@4.4.7 ----------------------------- - ipggckv libelf@0.8.12%gcc - - vrv2ttb libelf@0.8.12%gcc cppflags="-O3" + -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- + 4pt75q7 zlib@1.2.11%clang - csrt4qx libelf@0.8.13%gcc + -- linux-ubuntu16.04-x86_64 / gcc@4.7 --------------------------- + bq2wtdx zlib@1.2.11%gcc - -- linux-redhat6-x86_64 / intel@15.0.4 -------------------------- - w33hrej libelf@0.8.13%intel + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + bkyl5bh zlib@1.2.8%gcc - -- linux-redhat6-x86_64 / intel@16.0.3 -------------------------- - 7wgp32x libelf@0.8.13%intel + 64mns5m zlib@1.2.8%gcc cppflags="-O3" + 5nus6kn zlib@1.2.11%gcc Spack generates a hash for each spec. This hash is a function of the full provenance of the package, so any change to the spec affects the @@ -256,24 +286,25 @@ existing package's hash matches the desired spec. .. code-block:: console - $ spack install libdwarf - ==> Installing libdwarf - ==> libelf is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.13-csrt4qxfkhjgn5xg3zjpkir7xdnszl2a - ==> Can not find version 20160507 in url_list - ==> Trying to fetch from ~/spack/var/spack/cache/libdwarf/libdwarf-20160507.tar.gz - curl: (37) Couldn't open file ~/spack/var/spack/cache/libdwarf/libdwarf-20160507.tar.gz - ==> Fetching from ~/spack/var/spack/cache/libdwarf/libdwarf-20160507.tar.gz failed. - ==> Trying to fetch from http://www.prevanders.net/libdwarf-20160507.tar.gz - ################################################################################################################################################################################# 100.0% - ==> Staging archive: ~/spack/var/spack/stage/libdwarf-20160507-yfx6p3g3rkmqvcqbmtb34o6pln7pqvcz/libdwarf-20160507.tar.gz - ==> Created stage in ~/spack/var/spack/stage/libdwarf-20160507-yfx6p3g3rkmqvcqbmtb34o6pln7pqvcz - ==> No patches needed for libdwarf - ==> Building libdwarf [Package] - ==> Executing phase : 'install' - ==> Successfully installed libdwarf - Fetch: 1.56s. Build: 33.59s. Total: 35.15s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libdwarf-20160507-yfx6p3g3rkmqvcqbmtb34o6pln7pqvcz - + $ spack install --use-cache openssl + ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + ==> Installing openssl + ==> Searching for binary cache of openssl + ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu.spec.yaml + ######################################################################## 100.0% + ==> Installing openssl from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k/linux-ubuntu16.04-x86_64-gcc-5.4.0-openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 01:03:18 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed openssl from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom Dependencies can be explicitly requested using the ``^`` sigil. Note that the spec syntax is recursive. Anything we could specify about the @@ -281,36 +312,43 @@ top-level package, we can also specify about a dependency using ``^``. .. code-block:: console - $ spack install libdwarf ^libelf @0.8.12 %intel - ==> Installing libdwarf - ==> Installing libelf - ==> Trying to fetch from ~/spack/var/spack/cache/libelf/libelf-0.8.12.tar.gz - ################################################################################################################################################################################# 100.0% - ==> Staging archive: ~/spack/var/spack/stage/libelf-0.8.12-4blbe3qxqct3ymrfoxxnxysmybvbxay7/libelf-0.8.12.tar.gz - ==> Created stage in ~/spack/var/spack/stage/libelf-0.8.12-4blbe3qxqct3ymrfoxxnxysmybvbxay7 - ==> No patches needed for libelf - ==> Building libelf [Package] - ==> Executing phase : 'install' - ==> Successfully installed libelf - Fetch: 0.04s. Build: 52.16s. Total: 52.19s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/intel-16.0.3/libelf-0.8.12-4blbe3qxqct3ymrfoxxnxysmybvbxay7 - ==> Can not find version 20160507 in url_list - ==> Trying to fetch from ~/spack/var/spack/cache/libdwarf/libdwarf-20160507.tar.gz - ################################################################################################################################################################################# 100.0% - ==> Staging archive: ~/spack/var/spack/stage/libdwarf-20160507-csruprgucaujkfkrcywhwou7nbeis5fo/libdwarf-20160507.tar.gz - ==> Created stage in ~/spack/var/spack/stage/libdwarf-20160507-csruprgucaujkfkrcywhwou7nbeis5fo - ==> No patches needed for libdwarf - ==> Building libdwarf [Package] - ==> Executing phase : 'install' - ==> Successfully installed libdwarf - Fetch: 0.40s. Build: 2m 17.29s. Total: 2m 17.69s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/intel-16.0.3/libdwarf-20160507-csruprgucaujkfkrcywhwou7nbeis5fo - + $ spack install --use-cache openssl ^zlib @1.2.8 %clang + ==> Installing zlib + ==> Searching for binary cache of zlib + ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom.spec.yaml + ######################################################################## 100.0% + ==> Installing zlib from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.8/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-zlib-1.2.8-i426yu3o6lyau5fv5ljwsajfkqxj5rl5.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 01:03:06 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed zlib from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.8-i426yu3o6lyau5fv5ljwsajfkqxj5rl5 + ==> Installing openssl + ==> Searching for binary cache of openssl + ==> Installing openssl from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/openssl-1.0.2k/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-openssl-1.0.2k-ufruk7kj2fz3oupuat2jbgc2y7hg37vy.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 01:03:23 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed openssl from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/openssl-1.0.2k-ufruk7kj2fz3oupuat2jbgc2y7hg37vy Packages can also be referred to from the command line by their package hash. Using the ``spack find -lf`` command earlier we saw that the hash -of our optimized installation of libelf (``cppflags="-O3"``) began with -``vrv2ttb``. We can now explicitly build with that package without typing +of our optimized installation of zlib (``cppflags="-O3"``) began with +``64mns5m``. We can now explicitly build with that package without typing the entire spec, by using the ``/`` sigil to refer to it by hash. As with other tools like git, you do not need to specify an *entire* hash on the command line. You can specify just enough digits to identify a hash @@ -319,21 +357,27 @@ packages share the prefix) then spack will report an error. .. code-block:: console - $ spack install libdwarf ^/vrv2ttb - ==> Installing libdwarf - ==> libelf is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.12-vrv2ttbd34xlfoxy4jwt6qsjrcbalmmw - ==> Can not find version 20160507 in url_list - ==> Trying to fetch from ~/spack/var/spack/cache/libdwarf/libdwarf-20160507.tar.gz - #################################################################################################################################################################################################################################################### 100.0% - ==> Staging archive: ~/spack/var/spack/stage/libdwarf-20160507-dtg3tgnp7htccoly26gduqlrgvnwcp5t/libdwarf-20160507.tar.gz - ==> Created stage in ~/spack/var/spack/stage/libdwarf-20160507-dtg3tgnp7htccoly26gduqlrgvnwcp5t - ==> No patches needed for libdwarf - ==> Building libdwarf [Package] - ==> Executing phase : 'install' - ==> Successfully installed libdwarf - Fetch: 0.96s. Build: 24.03s. Total: 24.99s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libdwarf-20160507-dtg3tgnp7htccoly26gduqlrgvnwcp5t - + $ spack install --use-cache openssl ^/64mn + ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu + ==> Installing openssl + ==> Searching for binary cache of openssl + ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-zlib-1.2.8-i426yu3o6lyau5fv5ljwsajfkqxj5rl5.spec.yaml + ######################################################################## 100.0% + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-openssl-1.0.2k-ufruk7kj2fz3oupuat2jbgc2y7hg37vy.spec.yaml + ######################################################################## 100.0% + ==> Installing openssl from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k/linux-ubuntu16.04-x86_64-gcc-5.4.0-openssl-1.0.2k-gyxmhgbam26d7y42omb7xrvkjjgmzwio.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 01:03:12 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed openssl from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-gyxmhgbam26d7y42omb7xrvkjjgmzwio The ``spack find`` command can also take a ``-d`` flag, which can show dependency information. Note that each package has a top-level entry, @@ -343,104 +387,198 @@ even if it also appears as a dependency. $ spack find -ldf ==> 9 installed packages. - -- linux-redhat6-x86_64 / gcc@4.4.7 ----------------------------- - dtg3tgn libdwarf@20160507%gcc - vrv2ttb ^libelf@0.8.12%gcc cppflags="-O3" + -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- + ufruk7k openssl@1.0.2k%clang + i426yu3 ^zlib@1.2.8%clang - yfx6p3g libdwarf@20160507%gcc - csrt4qx ^libelf@0.8.13%gcc + i426yu3 zlib@1.2.8%clang - ipggckv libelf@0.8.12%gcc + 4pt75q7 zlib@1.2.11%clang - vrv2ttb libelf@0.8.12%gcc cppflags="-O3" - csrt4qx libelf@0.8.13%gcc + -- linux-ubuntu16.04-x86_64 / gcc@4.7 --------------------------- + bq2wtdx zlib@1.2.11%gcc - -- linux-redhat6-x86_64 / intel@15.0.4 -------------------------- - w33hrej libelf@0.8.13%intel + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + gyxmhgb openssl@1.0.2k%gcc + 64mns5m ^zlib@1.2.8%gcc cppflags="-O3" + 2woov64 openssl@1.0.2k%gcc + 5nus6kn ^zlib@1.2.11%gcc - -- linux-redhat6-x86_64 / intel@16.0.3 -------------------------- - csruprg libdwarf@20160507%intel - 4blbe3q ^libelf@0.8.12%intel + bkyl5bh zlib@1.2.8%gcc - 4blbe3q libelf@0.8.12%intel + 64mns5m zlib@1.2.8%gcc cppflags="-O3" - 7wgp32x libelf@0.8.13%intel + 5nus6kn zlib@1.2.11%gcc -As we get to more complex packages, full installs will take too long to -build in the time allotted for this tutorial. Our collaborators at CERN -have been working on binary caching for Spack, which would allow for very -fast installs of previously built packages. We are still working out the -security ramifications of the feature, but it is coming soon. - -For now, we will switch to doing "fake" installs. When supplied with the -``--fake`` flag (primarily used for debugging), Spack computes build -metadata the same way it normally would, but it does not download the -source or run the install script for a pacakge. We can use this to -quickly demonstrate some of the more advanced Spack features in our -limited tutorial time. - -``HDF5`` is an example of a more complicated package, with an MPI -dependency. If we install it "out of the box," it will build with -``openmpi``. +Let's move on to slightly more complicated packages. ``HDF5`` is a +good example of a more complicated package, with an MPI dependency. If +we install it "out of the box," it will build with ``openmpi``. .. code-block:: console - $ spack install --fake hdf5 - ==> Installing hdf5 - ==> Installing zlib - ==> Building zlib [Package] - ==> Successfully installed zlib - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh - ==> Installing openmpi - ==> Installing hwloc - ==> Installing libpciaccess - ==> Installing util-macros - ==> Building util-macros [Package] - ==> Successfully installed util-macros - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/util-macros-1.19.0-pc6zhs4cnkmg2cv4et4fizsp6scuvacg - ==> Installing libtool - ==> Installing m4 + $ spack install --use-cache hdf5 ==> Installing libsigsegv - ==> Building libsigsegv [Package] - ==> Successfully installed libsigsegv - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libsigsegv-2.10-q4cok3yber7lhf3jswg6mysg7oi53unh - ==> Building m4 [Package] - ==> Successfully installed m4 - Fetch: . Build: 0.23s. Total: 0.23s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je - ==> Building libtool [Package] - ==> Successfully installed libtool - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libtool-2.4.6-rdx5nkfjwlvcanz5il3ys2pe34j4vxx5 + ==> Searching for binary cache of libsigsegv + ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-openssl-1.0.2k-gyxmhgbam26d7y42omb7xrvkjjgmzwio.spec.yaml + ######################################################################## 100.0% + ==> Installing libsigsegv from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11/linux-ubuntu16.04-x86_64-gcc-5.4.0-libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 01:21:10 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed libsigsegv from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz + ==> Installing m4 + ==> Searching for binary cache of m4 + ==> Installing m4 from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18/linux-ubuntu16.04-x86_64-gcc-5.4.0-m4-1.4.18-r5envx3kqctwwflhd4qax4ahqtt6x43a.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 01:22:03 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed m4 from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-r5envx3kqctwwflhd4qax4ahqtt6x43a + ==> Installing libtool + ==> Searching for binary cache of libtool + ==> Installing libtool from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6/linux-ubuntu16.04-x86_64-gcc-5.4.0-libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 01:29:09 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed libtool from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu ==> Installing pkg-config - ==> Building pkg-config [Package] - ==> Successfully installed pkg-config - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/pkg-config-0.29.1-wpjnlzahdw6ahkrgmqyeugkj2zhv4tui - ==> Building libpciaccess [Package] - ==> Successfully installed libpciaccess - Fetch: . Build: 0.10s. Total: 0.10s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libpciaccess-0.13.4-m2f6fpm22rpprq2ihkmfx6llf363264m - ==> Building hwloc [Package] - ==> Successfully installed hwloc - Fetch: . Build: 0.23s. Total: 0.23s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hwloc-1.11.4-xpb6hbl2hsze25cgdgfnoppn6rchhzaz - ==> Building openmpi [Package] - ==> Successfully installed openmpi - Fetch: . Build: 0.35s. Total: 0.35s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openmpi-2.0.1-j4cgoq4furxvr73pq72r2qgywgksw3qn - ==> Building hdf5 [AutotoolsPackage] - ==> Successfully installed hdf5 - Fetch: . Build: 0.61s. Total: 0.61s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-ezvtnox35albuaxqryuondweyjgeo6es - + ==> Searching for binary cache of pkg-config + ==> Installing pkg-config from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkg-config-0.29.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-pkg-config-0.29.2-ae2hwm7q57byfbxtymts55xppqwk7ecj.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 01:30:13 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed pkg-config from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkg-config-0.29.2-ae2hwm7q57byfbxtymts55xppqwk7ecj + ==> Installing util-macros + ==> Searching for binary cache of util-macros + ==> Installing util-macros from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/util-macros-1.19.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 01:30:12 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed util-macros from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr + ==> Installing libpciaccess + ==> Searching for binary cache of libpciaccess + ==> Installing libpciaccess from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libpciaccess-0.13.5/linux-ubuntu16.04-x86_64-gcc-5.4.0-libpciaccess-0.13.5-5urc6tcjae26fbbd2wyfohoszhgxtbmc.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:30:23 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed libpciaccess from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libpciaccess-0.13.5-5urc6tcjae26fbbd2wyfohoszhgxtbmc + ==> Installing xz + ==> Searching for binary cache of xz + ==> Installing xz from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/xz-5.2.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-xz-5.2.3-htnq7wqdrqtof6uxqicdj3f7oe3xz6pw.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:30:34 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed xz from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/xz-5.2.3-htnq7wqdrqtof6uxqicdj3f7oe3xz6pw + ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + ==> Installing libxml2 + ==> Searching for binary cache of libxml2 + ==> Installing libxml2 from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libxml2-2.9.4/linux-ubuntu16.04-x86_64-gcc-5.4.0-libxml2-2.9.4-sxk64lvcxhqjflzesnf3ye4wakovwi45.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:30:23 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed libxml2 from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libxml2-2.9.4-sxk64lvcxhqjflzesnf3ye4wakovwi45 + ==> Installing hwloc + ==> Searching for binary cache of hwloc + ==> Installing hwloc from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hwloc-1.11.8/linux-ubuntu16.04-x86_64-gcc-5.4.0-hwloc-1.11.8-ivg4d2e6anxwin4zbld2g4qlrbuquoyg.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:30:32 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed hwloc from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hwloc-1.11.8-ivg4d2e6anxwin4zbld2g4qlrbuquoyg + ==> Installing openmpi + ==> Searching for binary cache of openmpi + ==> Installing openmpi from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.0.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-openmpi-3.0.0-yo5qkfvumpmgmvlbalqcadu46j5bd52f.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:43:34 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed openmpi from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.0.0-yo5qkfvumpmgmvlbalqcadu46j5bd52f + ==> Installing hdf5 + ==> Searching for binary cache of hdf5 + ==> Installing hdf5 from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-bovz45ms24pmfr7hlckf56bxegfc4rea.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:53:08 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed hdf5 from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-bovz45ms24pmfr7hlckf56bxegfc4rea Spack packages can also have variants. Boolean variants can be specified using the ``+`` and ``~`` or ``-`` sigils. There are two sigils for @@ -451,14 +589,28 @@ support. .. code-block:: console - $ spack install --fake hdf5~mpi - ==> Installing hdf5 - ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh - ==> Building hdf5 [AutotoolsPackage] - ==> Successfully installed hdf5 - Fetch: . Build: 0.22s. Total: 0.22s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-twppaioxqn6lti4grgopnmhwcq3h2rpw - + $ spack install --use-cache hdf5~mpi + ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + ==> Installing hdf5 + ==> Searching for binary cache of hdf5 + ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-openmpi-3.0.0-yo5qkfvumpmgmvlbalqcadu46j5bd52f.spec.yaml + ######################################################################## 100.0% + ... + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr.spec.yaml + ######################################################################## 100.0% + ==> Installing hdf5 from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-pa6oqzfeqzkqkzqr2375fqyt3qggx3tr.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:53:40 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed hdf5 from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-pa6oqzfeqzkqkzqr2375fqyt3qggx3tr We might also want to install HDF5 with a different MPI implementation. While MPI is not a package itself, packages can depend on @@ -475,84 +627,120 @@ by any of several providers. .. code-block:: console - $ spack install --fake hdf5+mpi ^mpich + $ spack install --use-cache hdf5+hl+mpi ^mpich + ==> Installing mpich + ==> Searching for binary cache of mpich + ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-pa6oqzfeqzkqkzqr2375fqyt3qggx3tr.spec.yaml + ######################################################################## 100.0% + ==> Installing mpich from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpich-3.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-mpich-3.2-cymrnoowcc4vdyvdnf5ypvob4cmdadk5.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:45:26 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed mpich from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpich-3.2-cymrnoowcc4vdyvdnf5ypvob4cmdadk5 + ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb ==> Installing hdf5 - ==> mpich is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpich-3.2-5jlp2ndnsb67txggraglu47vjmayx5za - ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh - ==> Building hdf5 [AutotoolsPackage] - ==> Successfully installed hdf5 - Fetch: . Build: 0.38s. Total: 0.38s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-j36yfw25i6gdd3q4vwlupgkpwic4ua6m - + ==> Searching for binary cache of hdf5 + ==> Installing hdf5 from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-e4gz6f2l5ik3ijuk3alwsqplex4tbvin.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:49:45 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed hdf5 from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-e4gz6f2l5ik3ijuk3alwsqplex4tbvin We'll do a quick check in on what we have installed so far. .. code-block:: console $ spack find -ldf - ==> 22 installed packages. - -- linux-redhat6-x86_64 / gcc@4.4.7 ----------------------------- - twppaio hdf5@1.10.0-patch1%gcc - ayc4jq7 ^zlib@1.2.8%gcc + ==> 23 installed packages. + -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- + ufruk7k openssl@1.0.2k%clang + i426yu3 ^zlib@1.2.8%clang + + i426yu3 zlib@1.2.8%clang - j36yfw2 hdf5@1.10.0-patch1%gcc - 5jlp2nd ^mpich@3.2%gcc - ayc4jq7 ^zlib@1.2.8%gcc + 4pt75q7 zlib@1.2.11%clang - ezvtnox hdf5@1.10.0-patch1%gcc - j4cgoq4 ^openmpi@2.0.1%gcc - xpb6hbl ^hwloc@1.11.4%gcc - m2f6fpm ^libpciaccess@0.13.4%gcc - ayc4jq7 ^zlib@1.2.8%gcc - xpb6hbl hwloc@1.11.4%gcc - m2f6fpm ^libpciaccess@0.13.4%gcc + -- linux-ubuntu16.04-x86_64 / gcc@4.7 --------------------------- + bq2wtdx zlib@1.2.11%gcc - dtg3tgn libdwarf@20160507%gcc - vrv2ttb ^libelf@0.8.12%gcc cppflags="-O3" - yfx6p3g libdwarf@20160507%gcc - csrt4qx ^libelf@0.8.13%gcc + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + pa6oqzf hdf5@1.10.1%gcc + 5nus6kn ^zlib@1.2.11%gcc - ipggckv libelf@0.8.12%gcc + bovz45m hdf5@1.10.1%gcc + yo5qkfv ^openmpi@3.0.0%gcc + ivg4d2e ^hwloc@1.11.8%gcc + 5urc6tc ^libpciaccess@0.13.5%gcc + sxk64lv ^libxml2@2.9.4%gcc + htnq7wq ^xz@5.2.3%gcc + 5nus6kn ^zlib@1.2.11%gcc - vrv2ttb libelf@0.8.12%gcc cppflags="-O3" + e4gz6f2 hdf5@1.10.1%gcc + cymrnoo ^mpich@3.2%gcc + 5nus6kn ^zlib@1.2.11%gcc - csrt4qx libelf@0.8.13%gcc + ivg4d2e hwloc@1.11.8%gcc + 5urc6tc ^libpciaccess@0.13.5%gcc + sxk64lv ^libxml2@2.9.4%gcc + htnq7wq ^xz@5.2.3%gcc + 5nus6kn ^zlib@1.2.11%gcc - m2f6fpm libpciaccess@0.13.4%gcc + 5urc6tc libpciaccess@0.13.5%gcc - q4cok3y libsigsegv@2.10%gcc + fypapcp libsigsegv@2.11%gcc - rdx5nkf libtool@2.4.6%gcc + o2pfwjf libtool@2.4.6%gcc - qijdzvh m4@1.4.17%gcc - q4cok3y ^libsigsegv@2.10%gcc + sxk64lv libxml2@2.9.4%gcc + htnq7wq ^xz@5.2.3%gcc + 5nus6kn ^zlib@1.2.11%gcc - 5jlp2nd mpich@3.2%gcc + r5envx3 m4@1.4.18%gcc + fypapcp ^libsigsegv@2.11%gcc - j4cgoq4 openmpi@2.0.1%gcc - xpb6hbl ^hwloc@1.11.4%gcc - m2f6fpm ^libpciaccess@0.13.4%gcc + cymrnoo mpich@3.2%gcc - wpjnlza pkg-config@0.29.1%gcc + yo5qkfv openmpi@3.0.0%gcc + ivg4d2e ^hwloc@1.11.8%gcc + 5urc6tc ^libpciaccess@0.13.5%gcc + sxk64lv ^libxml2@2.9.4%gcc + htnq7wq ^xz@5.2.3%gcc + 5nus6kn ^zlib@1.2.11%gcc - pc6zhs4 util-macros@1.19.0%gcc + gyxmhgb openssl@1.0.2k%gcc + 64mns5m ^zlib@1.2.8%gcc cppflags="-O3" - ayc4jq7 zlib@1.2.8%gcc + 2woov64 openssl@1.0.2k%gcc + 5nus6kn ^zlib@1.2.11%gcc + ae2hwm7 pkg-config@0.29.2%gcc - -- linux-redhat6-x86_64 / intel@15.0.4 -------------------------- - w33hrej libelf@0.8.13%intel + milz7fm util-macros@1.19.1%gcc + htnq7wq xz@5.2.3%gcc - -- linux-redhat6-x86_64 / intel@16.0.3 -------------------------- - csruprg libdwarf@20160507%intel - 4blbe3q ^libelf@0.8.12%intel + bkyl5bh zlib@1.2.8%gcc - 4blbe3q libelf@0.8.12%intel + 64mns5m zlib@1.2.8%gcc cppflags="-O3" - 7wgp32x libelf@0.8.13%intel + 5nus6kn zlib@1.2.11%gcc Spack models the dependencies of packages as a directed acyclic graph @@ -562,7 +750,7 @@ DAG as a graph. .. code-block:: console - $ spack graph hdf5+mpi ^mpich + $ spack graph hdf5+hl+mpi ^mpich o hdf5 |\ o | zlib @@ -582,198 +770,277 @@ consistency requirements. It is entirely possible to have two packages using different versions of a dependency to build, which obviously cannot be done with linked dependencies. -``HDF5`` is more complicated than our basic example of libelf and -libdwarf, but it's still within the realm of software that an experienced +``HDF5`` is more complicated than our basic example of zlib and +openssl, but it's still within the realm of software that an experienced HPC user could reasonably expect to install given a bit of time. Now -let's look at a more complicated package. +let's look at an even more complicated package. .. code-block:: console - $ spack install --fake trilinos - ==> Installing trilinos - ==> Installing superlu-dist - ==> openmpi is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openmpi-2.0.1-j4cgoq4furxvr73pq72r2qgywgksw3qn - ==> Installing parmetis - ==> openmpi is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openmpi-2.0.1-j4cgoq4furxvr73pq72r2qgywgksw3qn - ==> Installing cmake + $ spack install --use-cache trilinos ==> Installing bzip2 - ==> Building bzip2 [Package] - ==> Successfully installed bzip2 - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/bzip2-1.0.6-gll2xsahysy7ji5gkmfxwkofdt3mwjhs - ==> expat is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/expat-2.2.0-mg5kwd3kluxdgorj32vzbp7aksg3vqej + ==> Searching for binary cache of bzip2 + ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-e4gz6f2l5ik3ijuk3alwsqplex4tbvin.spec.yaml + ######################################################################## 100.0% + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-mpich-3.2-cymrnoowcc4vdyvdnf5ypvob4cmdadk5.spec.yaml + ######################################################################## 100.0% + ==> Installing bzip2 from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/bzip2-1.0.6/linux-ubuntu16.04-x86_64-gcc-5.4.0-bzip2-1.0.6-ufczdvsqt6edesm36xiucyry7myhj7e7.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:39:37 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed bzip2 from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/bzip2-1.0.6-ufczdvsqt6edesm36xiucyry7myhj7e7 + ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + ==> Installing boost + ==> Searching for binary cache of boost + ==> Installing boost from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/boost-1.65.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-boost-1.65.1-xxqnbqql5nup7rujer2ury3hsdgcumzb.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:43:14 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed boost from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/boost-1.65.1-xxqnbqql5nup7rujer2ury3hsdgcumzb + ==> pkg-config is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkg-config-0.29.2-ae2hwm7q57byfbxtymts55xppqwk7ecj ==> Installing ncurses - ==> Building ncurses [Package] - ==> Successfully installed ncurses - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/ncurses-6.0-fttg4astvrtq2buey4wq66tnyu7bgj2c - ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh - ==> Installing openssl - ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh - ==> Building openssl [Package] - ==> Successfully installed openssl - Fetch: . Build: 0.23s. Total: 0.23s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openssl-1.0.2j-kt5xyk2dkho6tzadnqlbnbujmljprylg - ==> Installing libarchive - ==> Installing lzma - ==> Building lzma [Package] - ==> Successfully installed lzma - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/lzma-4.32.7-hah2cdo3zbulz6yg5do6dvnfn6en5v5c - ==> Installing nettle - ==> m4 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je - ==> Installing gmp - ==> m4 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je - ==> Building gmp [AutotoolsPackage] - ==> Successfully installed gmp - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gmp-6.1.1-uwn4gfdtq3sywy5uf4f7znrh66oybikf - ==> Building nettle [Package] - ==> Successfully installed nettle - Fetch: . Build: 0.18s. Total: 0.18s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/nettle-3.2-w4ieitifcmrldo4ra7as63apagzf56ja - ==> bzip2 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/bzip2-1.0.6-gll2xsahysy7ji5gkmfxwkofdt3mwjhs - ==> expat is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/expat-2.2.0-mg5kwd3kluxdgorj32vzbp7aksg3vqej - ==> Installing libxml2 - ==> Installing xz - ==> Building xz [Package] - ==> Successfully installed xz - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/xz-5.2.2-bxh6cpyqqozazm5okvjqk23sww3gccnf - ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh - ==> Building libxml2 [Package] - ==> Successfully installed libxml2 - Fetch: . Build: 0.35s. Total: 0.35s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libxml2-2.9.4-un323rppyu5qipkegyf7flmymvtmunrx - ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh - ==> Installing lz4 - ==> Building lz4 [Package] - ==> Successfully installed lz4 - Fetch: . Build: 0.12s. Total: 0.12s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/lz4-131-ivy2fcaw7ywujx74weebdi5bsm7q4vkc - ==> openssl is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openssl-1.0.2j-kt5xyk2dkho6tzadnqlbnbujmljprylg - ==> xz is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/xz-5.2.2-bxh6cpyqqozazm5okvjqk23sww3gccnf - ==> Installing lzo - ==> Building lzo [AutotoolsPackage] - ==> Successfully installed lzo - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/lzo-2.09-dlgnm74ozo6baactkft5oah2jre2ri2i - ==> Building libarchive [Package] - ==> Successfully installed libarchive - Fetch: . Build: 1.35s. Total: 1.35s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libarchive-3.2.1-biq3kebw7vel7njusill7vv7mjldkqjv - ==> xz is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/xz-5.2.2-bxh6cpyqqozazm5okvjqk23sww3gccnf - ==> Installing curl - ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh - ==> openssl is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openssl-1.0.2j-kt5xyk2dkho6tzadnqlbnbujmljprylg - ==> Building curl [Package] - ==> Successfully installed curl - Fetch: . Build: 0.36s. Total: 0.36s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/curl-7.50.3-oze4gqutj4x2isbkcn5ob2bhhxbskod4 - ==> Building cmake [Package] - ==> Successfully installed cmake - Fetch: . Build: 1.64s. Total: 1.64s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e - ==> Installing metis - ==> cmake is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e - ==> Building metis [Package] - ==> Successfully installed metis - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/metis-5.1.0-ithifyl4xvqbn76js23wsb4tjnztrbdv - ==> Building parmetis [Package] - ==> Successfully installed parmetis - Fetch: . Build: 0.62s. Total: 0.62s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/parmetis-4.0.3-rtg6hml5t6acdcnxomn3l5zfiful4d2t - ==> Installing openblas - ==> Building openblas [Package] - ==> Successfully installed openblas - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt - ==> metis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/metis-5.1.0-ithifyl4xvqbn76js23wsb4tjnztrbdv - ==> Building superlu-dist [Package] - ==> Successfully installed superlu-dist - Fetch: . Build: 0.85s. Total: 0.85s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/superlu-dist-5.1.1-25r6jlvkpjnkiuwt2rtbzhk3l3htuxs7 - ==> cmake is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e + ==> Searching for binary cache of ncurses + ==> Installing ncurses from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-ncurses-6.0-ukq4tccptm2rxd56d2bumqthnpcjzlez.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 01:06:38 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed ncurses from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.0-ukq4tccptm2rxd56d2bumqthnpcjzlez + ==> openssl is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom + ==> Installing cmake + ==> Searching for binary cache of cmake + ==> Installing cmake from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/cmake-3.9.4/linux-ubuntu16.04-x86_64-gcc-5.4.0-cmake-3.9.4-a2lyofsoxutyy4ihvzopizpbjubtdoem.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 01:22:03 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed cmake from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/cmake-3.9.4-a2lyofsoxutyy4ihvzopizpbjubtdoem ==> Installing glm - ==> cmake is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e - ==> Building glm [Package] - ==> Successfully installed glm - Fetch: . Build: 0.12s. Total: 0.12s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/glm-0.9.7.1-7a6oho4aerz7vftxd5ur7lywscht2iry + ==> Searching for binary cache of glm + ==> Installing glm from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/glm-0.9.7.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-glm-0.9.7.1-jnw622jwcbsymzj2fsx22omjl7tmvaws.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:30:38 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed glm from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/glm-0.9.7.1-jnw622jwcbsymzj2fsx22omjl7tmvaws + ==> libsigsegv is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz + ==> m4 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-r5envx3kqctwwflhd4qax4ahqtt6x43a + ==> libtool is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu + ==> util-macros is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr + ==> libpciaccess is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libpciaccess-0.13.5-5urc6tcjae26fbbd2wyfohoszhgxtbmc + ==> xz is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/xz-5.2.3-htnq7wqdrqtof6uxqicdj3f7oe3xz6pw + ==> libxml2 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libxml2-2.9.4-sxk64lvcxhqjflzesnf3ye4wakovwi45 + ==> hwloc is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hwloc-1.11.8-ivg4d2e6anxwin4zbld2g4qlrbuquoyg + ==> openmpi is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.0.0-yo5qkfvumpmgmvlbalqcadu46j5bd52f + ==> Installing hdf5 + ==> Searching for binary cache of hdf5 + ==> Installing hdf5 from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-d73xxpvfxgd2z2ypmuuwtxhoxmzdglez.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:39:36 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed hdf5 from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-d73xxpvfxgd2z2ypmuuwtxhoxmzdglez + ==> Installing openblas + ==> Searching for binary cache of openblas + ==> Installing openblas from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/openblas-0.2.20/linux-ubuntu16.04-x86_64-gcc-5.4.0-openblas-0.2.20-4dahl6ltbpojei4s3stbqbq5iuuqlaxo.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:43:22 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed openblas from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openblas-0.2.20-4dahl6ltbpojei4s3stbqbq5iuuqlaxo ==> Installing hypre - ==> openmpi is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openmpi-2.0.1-j4cgoq4furxvr73pq72r2qgywgksw3qn - ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt - ==> Building hypre [Package] - ==> Successfully installed hypre - Fetch: . Build: 0.61s. Total: 0.61s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hypre-2.11.1-lf7hcejiiww5peesh57quda72z67veit - ==> metis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/metis-5.1.0-ithifyl4xvqbn76js23wsb4tjnztrbdv + ==> Searching for binary cache of hypre + ==> Installing hypre from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.12.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hypre-2.12.1-z3rgfzqc4gu4u4qvveyo2dqqzl2j463z.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:30:17 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed hypre from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.12.1-z3rgfzqc4gu4u4qvveyo2dqqzl2j463z + ==> Installing matio + ==> Searching for binary cache of matio + ==> Installing matio from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9/linux-ubuntu16.04-x86_64-gcc-5.4.0-matio-1.5.9-4ajrcuhdf5uktotnrfzufufy5vbd6any.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:30:24 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed matio from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9-4ajrcuhdf5uktotnrfzufufy5vbd6any + ==> Installing metis + ==> Searching for binary cache of metis + ==> Installing metis from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/metis-5.1.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-metis-5.1.0-m34qytcqsvsaduxyh3wevf3kj6pbzyw6.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:39:28 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed metis from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/metis-5.1.0-m34qytcqsvsaduxyh3wevf3kj6pbzyw6 ==> Installing netlib-scalapack - ==> openmpi is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openmpi-2.0.1-j4cgoq4furxvr73pq72r2qgywgksw3qn - ==> cmake is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e - ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt - ==> Building netlib-scalapack [Package] - ==> Successfully installed netlib-scalapack - Fetch: . Build: 0.61s. Total: 0.61s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/netlib-scalapack-2.0.2-dvcanz2qq4dfcexznbhbmzbxfj43uz4q - ==> Installing suite-sparse - ==> Installing tbb - ==> Building tbb [Package] - ==> Successfully installed tbb - Fetch: . Build: 0.12s. Total: 0.12s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/tbb-4.4.4-zawzkkhrmdonbjpj3a5bb6gkgnqlrjeu - ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt - ==> metis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/metis-5.1.0-ithifyl4xvqbn76js23wsb4tjnztrbdv - ==> Building suite-sparse [Package] - ==> Successfully installed suite-sparse - Fetch: . Build: 0.49s. Total: 0.49s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/suite-sparse-4.5.3-lvur6hriy2j7xfjwh5punp3exwpynzm6 - ==> openmpi is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openmpi-2.0.1-j4cgoq4furxvr73pq72r2qgywgksw3qn - ==> Installing netcdf - ==> m4 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je - ==> curl is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/curl-7.50.3-oze4gqutj4x2isbkcn5ob2bhhxbskod4 - ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh - ==> hdf5 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-ezvtnox35albuaxqryuondweyjgeo6es - ==> Building netcdf [Package] - ==> Successfully installed netcdf - Fetch: . Build: 0.90s. Total: 0.90s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/netcdf-4.4.1-tcl4zbrmdfrit2cqlaxig6xieu5h552j + ==> Searching for binary cache of netlib-scalapack + ==> Installing netlib-scalapack from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-netlib-scalapack-2.0.2-xudg7xypr63nte6ifrdsmllilxbrfiar.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:30:28 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed netlib-scalapack from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2-xudg7xypr63nte6ifrdsmllilxbrfiar ==> Installing mumps - ==> netlib-scalapack is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/netlib-scalapack-2.0.2-dvcanz2qq4dfcexznbhbmzbxfj43uz4q - ==> openmpi is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openmpi-2.0.1-j4cgoq4furxvr73pq72r2qgywgksw3qn - ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt - ==> Building mumps [Package] - ==> Successfully installed mumps - Fetch: . Build: 0.74s. Total: 0.74s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mumps-5.0.2-kr5r4nnx5tfcacxnk3ii5dsxbe6pu5fy - ==> Installing matio - ==> Building matio [Package] - ==> Successfully installed matio - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/matio-1.5.2-4zrozucookychlvc4q53omp2zyfk2bed - ==> Installing boost - ==> bzip2 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/bzip2-1.0.6-gll2xsahysy7ji5gkmfxwkofdt3mwjhs - ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh - ==> Building boost [Package] - ==> Successfully installed boost - Fetch: . Build: 0.35s. Total: 0.35s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/boost-1.62.0-je7eqvzt74kezwhh55y5lwt5dy6pnali - ==> parmetis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/parmetis-4.0.3-rtg6hml5t6acdcnxomn3l5zfiful4d2t - ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt - ==> hdf5 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-ezvtnox35albuaxqryuondweyjgeo6es - ==> Building trilinos [Package] - ==> Successfully installed trilinos - Fetch: . Build: 2.63s. Total: 2.63s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/trilinos-12.8.1-uvd6dfd7x4uyvck4awo3r3frudihn4ar - - -Now we're starting to see the power of Spack. Trilinos has 11 top level -dependecies, many of which have dependencies of their own. Installing -more complex packages can take days or weeks even for an experienced -user. Although we've done a fake installation for the tutorial, a real -installation of trilinos using Spack takes about 3 hours (depending on -the system), but only 20 seconds of programmer time. + ==> Searching for binary cache of mumps + ==> Installing mumps from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-mumps-5.1.1-5a7hgodxoze47xqd32jcxhvzctex4ezx.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:30:15 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed mumps from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1-5a7hgodxoze47xqd32jcxhvzctex4ezx + ==> Installing netcdf + ==> Searching for binary cache of netcdf + ==> Installing netcdf from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.4.1.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-netcdf-4.4.1.1-gk2xxhbqijnrdwicawawcll4t3c7dvoj.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:43:37 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed netcdf from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.4.1.1-gk2xxhbqijnrdwicawawcll4t3c7dvoj + ==> Installing parmetis + ==> Searching for binary cache of parmetis + ==> Installing parmetis from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-parmetis-4.0.3-o4qdo7aylhejov2e5ii7tagrnw6qrrlo.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:39:37 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed parmetis from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3-o4qdo7aylhejov2e5ii7tagrnw6qrrlo + ==> Installing suite-sparse + ==> Searching for binary cache of suite-sparse + ==> Installing suite-sparse from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/suite-sparse-4.5.5/linux-ubuntu16.04-x86_64-gcc-5.4.0-suite-sparse-4.5.5-bg67crx4ltmxulnumuxjxqzrcobpmyzg.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:30:31 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed suite-sparse from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/suite-sparse-4.5.5-bg67crx4ltmxulnumuxjxqzrcobpmyzg + ==> Installing superlu-dist + ==> Searching for binary cache of superlu-dist + ==> Installing superlu-dist from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/superlu-dist-5.2.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-superlu-dist-5.2.2-gggsamgizi2dwmwxglgzbxvg6hkamhol.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:43:35 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed superlu-dist from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/superlu-dist-5.2.2-gggsamgizi2dwmwxglgzbxvg6hkamhol + ==> Installing trilinos + ==> Searching for binary cache of trilinos + ==> Installing trilinos from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-trilinos-12.12.1-istwe3b43b7etgtrhcuzjem3p5gonc6h.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 11:47:19 PM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed trilinos from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1-istwe3b43b7etgtrhcuzjem3p5gonc6h + +Now we're starting to see the power of Spack. Trilinos has 11 top +level dependecies, many of which have dependencies of their +own. Installing more complex packages can take days or weeks even for +an experienced user. Although we've done a binary installation for the +tutorial, a source installation of trilinos using Spack takes about 3 +hours (depending on the system), but only 20 seconds of programmer +time. Spack manages constistency of the entire DAG. Every MPI dependency will be satisfied by the same configuration of MPI, etc. If we install @@ -782,70 +1049,143 @@ with ``mpich``: .. code-block:: console - $ spack install --fake trilinos ^hdf5+mpi ^mpich - ==> Installing trilinos - ==> Installing superlu-dist - ==> mpich is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpich-3.2-5jlp2ndnsb67txggraglu47vjmayx5za - ==> metis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/metis-5.1.0-ithifyl4xvqbn76js23wsb4tjnztrbdv - ==> Installing parmetis - ==> mpich is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpich-3.2-5jlp2ndnsb67txggraglu47vjmayx5za - ==> metis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/metis-5.1.0-ithifyl4xvqbn76js23wsb4tjnztrbdv - ==> cmake is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e - ==> Building parmetis [Package] - ==> Successfully installed parmetis - Fetch: . Build: 0.38s. Total: 0.38s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/parmetis-4.0.3-43kbtni6p5y446c6qdkybq4htj7ot4zn - ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt - ==> Building superlu-dist [Package] - ==> Successfully installed superlu-dist - Fetch: . Build: 0.61s. Total: 0.61s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/superlu-dist-5.1.1-46uuupehmonx5jicc6xnegnud2n5jqyl - ==> cmake is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e - ==> glm is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/glm-0.9.7.1-7a6oho4aerz7vftxd5ur7lywscht2iry + $ spack install --use-cache trilinos +hdf5 ^hdf5+hl+mpi ^mpich + ==> bzip2 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/bzip2-1.0.6-ufczdvsqt6edesm36xiucyry7myhj7e7 + ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + ==> boost is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/boost-1.65.1-xxqnbqql5nup7rujer2ury3hsdgcumzb + ==> pkg-config is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkg-config-0.29.2-ae2hwm7q57byfbxtymts55xppqwk7ecj + ==> ncurses is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.0-ukq4tccptm2rxd56d2bumqthnpcjzlez + ==> openssl is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom + ==> cmake is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/cmake-3.9.4-a2lyofsoxutyy4ihvzopizpbjubtdoem + ==> glm is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/glm-0.9.7.1-jnw622jwcbsymzj2fsx22omjl7tmvaws + ==> mpich is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpich-3.2-cymrnoowcc4vdyvdnf5ypvob4cmdadk5 + ==> hdf5 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-e4gz6f2l5ik3ijuk3alwsqplex4tbvin + ==> openblas is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openblas-0.2.20-4dahl6ltbpojei4s3stbqbq5iuuqlaxo ==> Installing hypre - ==> mpich is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpich-3.2-5jlp2ndnsb67txggraglu47vjmayx5za - ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt - ==> Building hypre [Package] - ==> Successfully installed hypre - Fetch: . Build: 0.37s. Total: 0.37s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hypre-2.11.1-6ajnyymoivs5apajd7thjisae36jv4lz - ==> metis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/metis-5.1.0-ithifyl4xvqbn76js23wsb4tjnztrbdv + ==> Searching for binary cache of hypre + ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-netcdf-4.4.1.1-gk2xxhbqijnrdwicawawcll4t3c7dvoj.spec.yaml + ######################################################################## 100.0% + ... + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-bzip2-1.0.6-ufczdvsqt6edesm36xiucyry7myhj7e7.spec.yaml + ######################################################################## 100.0% + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-boost-1.65.1-xxqnbqql5nup7rujer2ury3hsdgcumzb.spec.yaml + ######################################################################## 100.0% + ==> Installing hypre from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.12.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hypre-2.12.1-3psjg2ka2qa26jtgitlil4vglqr67anj.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:49:37 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed hypre from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.12.1-3psjg2ka2qa26jtgitlil4vglqr67anj + ==> Installing matio + ==> Searching for binary cache of matio + ==> Installing matio from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9/linux-ubuntu16.04-x86_64-gcc-5.4.0-matio-1.5.9-3ibrutc6cs7x6ybyt5ni5n6djtq5okm2.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:45:26 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed matio from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9-3ibrutc6cs7x6ybyt5ni5n6djtq5okm2 + ==> metis is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/metis-5.1.0-m34qytcqsvsaduxyh3wevf3kj6pbzyw6 ==> Installing netlib-scalapack - ==> mpich is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpich-3.2-5jlp2ndnsb67txggraglu47vjmayx5za - ==> cmake is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e - ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt - ==> Building netlib-scalapack [Package] - ==> Successfully installed netlib-scalapack - Fetch: . Build: 0.37s. Total: 0.37s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/netlib-scalapack-2.0.2-dayeep27omm26wksd3iqvbu3gezc2eoh - ==> suite-sparse is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/suite-sparse-4.5.3-lvur6hriy2j7xfjwh5punp3exwpynzm6 - ==> Installing netcdf - ==> m4 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je - ==> curl is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/curl-7.50.3-oze4gqutj4x2isbkcn5ob2bhhxbskod4 - ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh - ==> hdf5 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-j36yfw25i6gdd3q4vwlupgkpwic4ua6m - ==> Building netcdf [Package] - ==> Successfully installed netcdf - Fetch: . Build: 0.67s. Total: 0.67s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/netcdf-4.4.1-gfemi4jk4qltvp33xhtpkam7dozbqvhq + ==> Searching for binary cache of netlib-scalapack + ==> Installing netlib-scalapack from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-netlib-scalapack-2.0.2-km7tsbgoyyywonyejkjoojskhc5knz3z.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:49:49 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed netlib-scalapack from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2-km7tsbgoyyywonyejkjoojskhc5knz3z ==> Installing mumps - ==> mpich is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpich-3.2-5jlp2ndnsb67txggraglu47vjmayx5za - ==> netlib-scalapack is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/netlib-scalapack-2.0.2-dayeep27omm26wksd3iqvbu3gezc2eoh - ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt - ==> Building mumps [Package] - ==> Successfully installed mumps - Fetch: . Build: 0.49s. Total: 0.49s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mumps-5.0.2-w7t5pl3jhhwitfiyer63zj6zv7idkt3m - ==> mpich is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpich-3.2-5jlp2ndnsb67txggraglu47vjmayx5za - ==> matio is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/matio-1.5.2-4zrozucookychlvc4q53omp2zyfk2bed - ==> boost is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/boost-1.62.0-je7eqvzt74kezwhh55y5lwt5dy6pnali - ==> parmetis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/parmetis-4.0.3-43kbtni6p5y446c6qdkybq4htj7ot4zn - ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt - ==> hdf5 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-j36yfw25i6gdd3q4vwlupgkpwic4ua6m - ==> Building trilinos [Package] - ==> Successfully installed trilinos - Fetch: . Build: 2.42s. Total: 2.42s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/trilinos-12.8.1-ffwrpxnq7lhiw2abxn2u7ffr4jjsdwep + ==> Searching for binary cache of mumps + ==> Installing mumps from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-mumps-5.1.1-phvk6yhkzqed6gjsbah6dnhlesdclild.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:45:28 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed mumps from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1-phvk6yhkzqed6gjsbah6dnhlesdclild + ==> libsigsegv is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz + ==> m4 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-r5envx3kqctwwflhd4qax4ahqtt6x43a + ==> Installing netcdf + ==> Searching for binary cache of netcdf + ==> Installing netcdf from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.4.1.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-netcdf-4.4.1.1-rmx4uppnhpv6kq7bh7r46zfqevgdkkgw.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:49:38 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed netcdf from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.4.1.1-rmx4uppnhpv6kq7bh7r46zfqevgdkkgw + ==> Installing parmetis + ==> Searching for binary cache of parmetis + ==> Installing parmetis from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-parmetis-4.0.3-qk77g6aiqr3f2hsykg54zzuhlxcpdcmv.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:45:14 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed parmetis from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3-qk77g6aiqr3f2hsykg54zzuhlxcpdcmv + ==> suite-sparse is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/suite-sparse-4.5.5-bg67crx4ltmxulnumuxjxqzrcobpmyzg + ==> Installing superlu-dist + ==> Searching for binary cache of superlu-dist + ==> Installing superlu-dist from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/superlu-dist-5.2.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-superlu-dist-5.2.2-65vot2le3ezooz7tj6eveovly725o44x.spack + ######################################################################## 100.0% + gpg: Signature made Sat 11 Nov 2017 12:45:14 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed superlu-dist from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/superlu-dist-5.2.2-65vot2le3ezooz7tj6eveovly725o44x + ==> Installing trilinos + ==> Searching for binary cache of trilinos + ==> Installing trilinos from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-trilinos-12.12.1-xupifcp5d4f53cobm6g3xzao577uzezs.spack + ######################################################################## 100.0% + gpg: Signature made Sun 12 Nov 2017 12:04:58 AM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed trilinos from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1-xupifcp5d4f53cobm6g3xzao577uzezs + We see that every package in the trilinos DAG that depends on MPI now uses ``mpich``. @@ -854,51 +1194,46 @@ uses ``mpich``. $ spack find -d trilinos ==> 2 installed packages. - -- linux-redhat6-x86_64 / gcc@4.4.7 ----------------------------- - trilinos@12.8.1 - ^boost@1.62.0 + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + trilinos@12.12.1 + ^boost@1.65.1 ^bzip2@1.0.6 - ^zlib@1.2.8 + ^zlib@1.2.11 ^glm@0.9.7.1 - ^hdf5@1.10.0-patch1 - ^mpich@3.2 - ^hypre@2.11.1 - ^openblas@0.2.19 - ^matio@1.5.2 + ^hdf5@1.10.1 + ^openmpi@3.0.0 + ^hwloc@1.11.8 + ^libpciaccess@0.13.5 + ^libxml2@2.9.4 + ^xz@5.2.3 + ^hypre@2.12.1 + ^openblas@0.2.20 + ^matio@1.5.9 ^metis@5.1.0 - ^mumps@5.0.2 + ^mumps@5.1.1 ^netlib-scalapack@2.0.2 - ^netcdf@4.4.1 - ^curl@7.50.3 - ^openssl@1.0.2j + ^netcdf@4.4.1.1 ^parmetis@4.0.3 - ^suite-sparse@4.5.3 - ^tbb@4.4.4 - ^superlu-dist@5.1.1 + ^suite-sparse@4.5.5 + ^superlu-dist@5.2.2 - trilinos@12.8.1 - ^boost@1.62.0 + trilinos@12.12.1 + ^boost@1.65.1 ^bzip2@1.0.6 - ^zlib@1.2.8 + ^zlib@1.2.11 ^glm@0.9.7.1 - ^hdf5@1.10.0-patch1 - ^openmpi@2.0.1 - ^hwloc@1.11.4 - ^libpciaccess@0.13.4 - ^hypre@2.11.1 - ^openblas@0.2.19 - ^matio@1.5.2 + ^hdf5@1.10.1 + ^mpich@3.2 + ^hypre@2.12.1 + ^openblas@0.2.20 + ^matio@1.5.9 ^metis@5.1.0 - ^mumps@5.0.2 + ^mumps@5.1.1 ^netlib-scalapack@2.0.2 - ^netcdf@4.4.1 - ^curl@7.50.3 - ^openssl@1.0.2j + ^netcdf@4.4.1.1 ^parmetis@4.0.3 - ^suite-sparse@4.5.3 - ^tbb@4.4.4 - ^superlu-dist@5.1.1 - + ^suite-sparse@4.5.5 + ^superlu-dist@5.2.2 As we discussed before, the ``spack find -d`` command shows the dependency information as a tree. While that is often sufficient, many @@ -917,35 +1252,101 @@ command shows the full DAG of the dependency information. | | | | |\ | | | | | |\ | | | | | | |\ - | o | | | | | | netcdf - | |\ \ \ \ \ \ \ - | | |\ \ \ \ \ \ \ - | | | o | | | | | | curl - | | |/| | | | | | | - | |/| | | | | | | | - | | | o | | | | | | openssl - | | |/ / / / / / / - | |/| | | | | | | - | | o | | | | | | hdf5 - | |/| | | | | | | - | | |/ / / / / / - | o | | | | | | zlib - | / / / / / / - o | | | | | | swig - o | | | | | | pcre - / / / / / / - o | | | | | mpi - / / / / / - o | | | | matio - / / / / - o | | | lapack - / / / - o | | glm - / / - o | boost - / - o blas - + | | | | | | | |\ + | | | | | | | | |\ + | | | | | | | | | |\ + | | | | | | | | | | |\ + | | | | | | | | | | | |\ + | | | | | | | | | | | | |\ + | | | | | | | | | | | | | |\ + o | | | | | | | | | | | | | | superlu-dist + |\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ + | |_|/ / / / / / / / / / / / / + |/| | | | | | | | | | | | | | + | |\ \ \ \ \ \ \ \ \ \ \ \ \ \ + | | |_|/ / / / / / / / / / / / + | |/| | | | | | | | | | | | | + | | |\ \ \ \ \ \ \ \ \ \ \ \ \ + | | | |_|/ / / / / / / / / / / + | | |/| | | | | | | | | | | | + | | | | |_|_|/ / / / / / / / + | | | |/| | | | | | | | | | + | | | | o | | | | | | | | | suite-sparse + | | | |/| | | | | | | | | | + | | |/|/ / / / / / / / / / + o | | | | | | | | | | | | parmetis + |\| | | | | | | | | | | | + |\ \ \ \ \ \ \ \ \ \ \ \ \ + | |_|_|/ / / / / / / / / / + |/| | | | | | | | | | | | + | | |_|_|_|_|_|_|_|/ / / + | |/| | | | | | | | | | + | | | | | | o | | | | | mumps + | | | |_|_|/| | | | | | + | | |/| |_|/| | | | | | + | | | |/| |/ / / / / / + | | | | |/| | | | | | + | | | | o | | | | | | netlib-scalapack + | | |_|/| | | | | | | + | |/| |/| | | | | | | + | | |/|/ / / / / / / + o | | | | | | | | | metis + |/ / / / / / / / / + | | | | | | | o | glm + | |_|_|_|_|_|/ / + |/| | | | | | | + o | | | | | | | cmake + |\ \ \ \ \ \ \ \ + o | | | | | | | | openssl + | | | | o | | | | netcdf + | |_|_|/| | | | | + |/| | |/| | | | | + | | |/| | | | | | + | | | | |\ \ \ \ \ + | | | | | | |_|/ / + | | | | | |/| | | + | | | | | | o | | matio + | |_|_|_|_|/| | | + |/| | | | |/ / / + | | | | | | o | hypre + | | | |_|_|/| | + | | |/| |_|/ / + | | | |/| | | + | | | | | o | hdf5 + | |_|_|_|/| | + |/| | |_|/ / + | | |/| | | + | | o | | | openmpi + | | o | | | hwloc + | | |\ \ \ \ + | | | |\ \ \ \ + | | | o | | | | libxml2 + | |_|/| | | | | + |/| |/| | | | | + | | | | | | | o boost + | |_|_|_|_|_|/| + |/| | | | | | | + o | | | | | | | zlib + / / / / / / / + | | o | | | | xz + | | / / / / + | | o | | | libpciaccess + | |/| | | | + | | |\ \ \ \ + | | o | | | | util-macros + | | / / / / + o | | | | | ncurses + |/ / / / / + o | | | | pkg-config + / / / / + | o | | openblas + | / / + o | | libtool + |/ / + o | m4 + o | libsigsegv + / + o bzip2 You can control how the output is displayed with a number of options. @@ -963,100 +1364,92 @@ complicated packages. The output can be changed to the ``graphviz`` Uninstalling Packages --------------------- -Earlier we installed many configurations each of libelf and -libdwarf. Now we will go through and uninstall some of those packages +Earlier we installed many configurations each of zlib and +openssl. Now we will go through and uninstall some of those packages that we didn't really need. .. code-block:: console - $ spack find -d libdwarf + $ spack find -d openssl ==> 3 installed packages. - -- linux-redhat6-x86_64 / gcc@4.4.7 ----------------------------- - libdwarf@20160507 - ^libelf@0.8.12 + -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- + openssl@1.0.2k + ^zlib@1.2.8 - libdwarf@20160507 - ^libelf@0.8.13 + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + openssl@1.0.2k + ^zlib@1.2.8 + openssl@1.0.2k + ^zlib@1.2.11 - -- linux-redhat6-x86_64 / intel@16.0.3 -------------------------- - libdwarf@20160507 - ^libelf@0.8.12 - - $ spack find libelf + $ spack find zlib ==> 6 installed packages. - -- linux-redhat6-x86_64 / gcc@4.4.7 ----------------------------- - libelf@0.8.12 libelf@0.8.12 libelf@0.8.13 - - -- linux-redhat6-x86_64 / intel@15.0.4 -------------------------- - libelf@0.8.13 + -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- + zlib@1.2.8 zlib@1.2.11 - -- linux-redhat6-x86_64 / intel@16.0.3 -------------------------- - libelf@0.8.12 libelf@0.8.13 + -- linux-ubuntu16.04-x86_64 / gcc@4.7 --------------------------- + zlib@1.2.11 + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + zlib@1.2.8 zlib@1.2.8 zlib@1.2.11 We can uninstall packages by spec using the same syntax as install. .. code-block:: console - $ spack uninstall libelf%intel@15.0.4 - ==> The following packages will be uninstalled : - - -- linux-redhat6-x86_64 / intel@15.0.4 -------------------------- - w33hrej libelf@0.8.13%intel - - - ==> Do you want to proceed? [y/n] y - ==> Successfully uninstalled libelf@0.8.13%intel@15.0.4 arch=linux-redhat6-x86_64-w33hrej + $ spack uninstall zlib %gcc@4.7 + ==> The following packages will be uninstalled: + -- linux-ubuntu16.04-x86_64 / gcc@4.7 --------------------------- + bq2wtdx zlib@1.2.11%gcc+optimize+pic+shared + ==> Do you want to proceed? [y/N] y + ==> Successfully uninstalled zlib@1.2.11%gcc@4.7+optimize+pic+shared arch=linux-ubuntu16.04-x86_64 /bq2wtdx - $ spack find -lf libelf + $ spack find -lf zlib ==> 5 installed packages. - -- linux-redhat6-x86_64 / gcc@4.4.7 ----------------------------- - ipggckv libelf@0.8.12%gcc + -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- + i426yu3 zlib@1.2.8%clang - vrv2ttb libelf@0.8.12%gcc cppflags="-O3" + 4pt75q7 zlib@1.2.11%clang - csrt4qx libelf@0.8.13%gcc + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + bkyl5bh zlib@1.2.8%gcc - -- linux-redhat6-x86_64 / intel@16.0.3 -------------------------- - 4blbe3q libelf@0.8.12%intel + 64mns5m zlib@1.2.8%gcc cppflags="-O3" - 7wgp32x libelf@0.8.13%intel - - -We can uninstall packages by referring only to their hash. + 5nus6kn zlib@1.2.11%gcc +We can also uninstall packages by referring only to their hash. We can use either ``-f`` (force) or ``-R`` (remove dependents as well) to remove packages that are required by another installed package. .. code-block:: console - $ spack uninstall /4blb - ==> Error: Will not uninstall libelf@0.8.12%intel@16.0.3-4blbe3q + $ spack uninstall zlib/i426 + ==> Error: Will not uninstall zlib@1.2.8%clang@3.8.0-2ubuntu4/i426yu3 The following packages depend on it: - -- linux-redhat6-x86_64 / intel@16.0.3 -------------------------- - csruprg libdwarf@20160507%intel + -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- + ufruk7k openssl@1.0.2k%clang - ==> Error: You can use spack uninstall --dependents to uninstall these dependencies as well - $ spack uninstall -R /4blb - ==> The following packages will be uninstalled : + ==> Error: Use \`spack uninstall --dependents\` to uninstall these dependencies as well. - -- linux-redhat6-x86_64 / intel@16.0.3 -------------------------- - csruprg libdwarf@20160507%intel + $ spack uninstall -R zlib/i426 + ==> The following packages will be uninstalled: - 4blbe3q libelf@0.8.12%intel + -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- + ufruk7k openssl@1.0.2k%clang + i426yu3 zlib@1.2.8%clang+optimize+pic+shared - ==> Do you want to proceed? [y/n] y - ==> Successfully uninstalled libdwarf@20160507%intel@16.0.3 arch=linux-redhat6-x86_64-csruprg - ==> Successfully uninstalled libelf@0.8.12%intel@16.0.3 arch=linux-redhat6-x86_64-4blbe3q - + ==> Do you want to proceed? [y/N] y + ==> Successfully uninstalled openssl@1.0.2k%clang@3.8.0-2ubuntu4 arch=linux-ubuntu16.04-x86_64 /ufruk7k + ==> Successfully uninstalled zlib@1.2.8%clang@3.8.0-2ubuntu4+optimize+pic+shared arch=linux-ubuntu16.04-x86_64 /i426yu3 Spack will not uninstall packages that are not sufficiently specified. The ``-a`` (all) flag can be used to uninstall multiple @@ -1067,27 +1460,25 @@ packages at once. $ spack uninstall trilinos ==> Error: trilinos matches multiple packages: - -- linux-redhat6-x86_64 / gcc@4.4.7 ----------------------------- - ffwrpxn trilinos@12.8.1%gcc+boost~debug+hdf5+hypre+metis+mumps~python+shared+suite-sparse+superlu-dist + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + istwe3b trilinos@12.12.1%gcc~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~dtk+epetra+epetraext+exodus+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2+instantiate~instantiate_cmplx~intrepid~intrepid2+metis+ml+muelu+mumps~nox~openmp~pnetcdf~python~rol+sacado~shards+shared~stk+suite-sparse~superlu+superlu-dist+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2 - uvd6dfd trilinos@12.8.1%gcc+boost~debug+hdf5+hypre+metis+mumps~python+shared+suite-sparse+superlu-dist + xupifcp trilinos@12.12.1%gcc~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~dtk+epetra+epetraext+exodus+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2+instantiate~instantiate_cmplx~intrepid~intrepid2+metis+ml+muelu+mumps~nox~openmp~pnetcdf~python~rol+sacado~shards+shared~stk+suite-sparse~superlu+superlu-dist+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2 ==> Error: You can either: - a) Use a more specific spec, or - b) use spack uninstall -a to uninstall ALL matching specs. - + a) use a more specific spec, or + b) use `spack uninstall --all` to uninstall ALL matching specs. - $ spack uninstall /ffwr - ==> The following packages will be uninstalled : + $ spack uninstall /istw + ==> The following packages will be uninstalled: - -- linux-redhat6-x86_64 / gcc@4.4.7 ----------------------------- - ffwrpxn trilinos@12.8.1%gcc+boost~debug+hdf5+hypre+metis+mumps~python+shared+suite-sparse+superlu-dist + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + istwe3b trilinos@12.12.1%gcc~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~dtk+epetra+epetraext+exodus+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2+instantiate~instantiate_cmplx~intrepid~intrepid2+metis+ml+muelu+mumps~nox~openmp~pnetcdf~python~rol+sacado~shards+shared~stk+suite-sparse~superlu+superlu-dist+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2 - - ==> Do you want to proceed? [y/n] y - ==> Successfully uninstalled trilinos@12.8.1%gcc@4.4.7+boost~debug+hdf5+hypre+metis+mumps~python+shared+suite-sparse+superlu-dist arch=linux-redhat6-x86_64-ffwrpxn + ==> Do you want to proceed? [y/N] y + ==> Successfully uninstalled trilinos@12.12.1%gcc@5.4.0~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~dtk+epetra+epetraext+exodus+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2+instantiate~instantiate_cmplx~intrepid~intrepid2+metis+ml+muelu+mumps~nox~openmp~pnetcdf~python~rol+sacado~shards+shared~stk+suite-sparse~superlu+superlu-dist+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2 arch=linux-ubuntu16.04-x86_64 /istwe3b ----------------------------- Advanced ``spack find`` Usage @@ -1099,24 +1490,22 @@ already covered in the :ref:`basics-tutorial-install` and The ``spack find`` command can accept what we call "anonymous specs." These are expressions in spec syntax that do not contain a package -name. For example, ``spack find %intel`` will return every package built -with the intel compiler, and ``spack find cppflags="-O3"`` will +name. For example, ``spack find ^mpich`` will return every installed +package that depends on mpich, and ``spack find cppflags="-O3"`` will return every package which was built with ``cppflags="-O3"``. .. code-block:: console - $ spack find %intel - ==> 1 installed packages. - -- linux-redhat6-x86_64 / intel@16.0.3 -------------------------- - libelf@0.8.13 - + $ spack find ^mpich + ==> 9 installed packages. + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + hdf5@1.10.1 hypre@2.12.1 matio@1.5.9 mumps@5.1.1 netcdf@4.4.1.1 netlib-scalapack@2.0.2 parmetis@4.0.3 superlu-dist@5.2.2 trilinos@12.12.1 - $ spack find cppflags="-O3" + $ spack find cppflags=-O3 ==> 1 installed packages. - -- linux-redhat6-x86_64 / gcc@4.4.7 ----------------------------- - libelf@0.8.12 - + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + zlib@1.2.8 The ``find`` command can also show which packages were installed explicitly (rather than pulled in as a dependency) using the ``-e`` @@ -1128,20 +1517,19 @@ command. $ spack find -pe ==> 10 installed packages. - -- linux-redhat6-x86_64 / gcc@4.4.7 ----------------------------- - hdf5@1.10.0-patch1 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-twppaioxqn6lti4grgopnmhwcq3h2rpw - hdf5@1.10.0-patch1 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-j36yfw25i6gdd3q4vwlupgkpwic4ua6m - hdf5@1.10.0-patch1 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-ezvtnox35albuaxqryuondweyjgeo6es - libdwarf@20160507 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libdwarf-20160507-dtg3tgnp7htccoly26gduqlrgvnwcp5t - libdwarf@20160507 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libdwarf-20160507-yfx6p3g3rkmqvcqbmtb34o6pln7pqvcz - libelf@0.8.12 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.12-ipggckv6i7h44iryzfa4dwdela32a7fy - libelf@0.8.12 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.12-vrv2ttbd34xlfoxy4jwt6qsjrcbalmmw - libelf@0.8.13 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.13-csrt4qxfkhjgn5xg3zjpkir7xdnszl2a - trilinos@12.8.1 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/trilinos-12.8.1-uvd6dfd7x4uyvck4awo3r3frudihn4ar - - -- linux-redhat6-x86_64 / intel@16.0.3 -------------------------- - libelf@0.8.13 ~/spack/opt/spack/linux-redhat6-x86_64/intel-16.0.3/libelf-0.8.13-7wgp32xksatkvw2tbssmehw2t5tnxndj - + -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 -------------- + zlib@1.2.11 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.11-4pt75q7qq6lygf3hgnona4lyc2uwedul + + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + hdf5@1.10.1 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-pa6oqzfeqzkqkzqr2375fqyt3qggx3tr + hdf5@1.10.1 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-bovz45ms24pmfr7hlckf56bxegfc4rea + hdf5@1.10.1 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-e4gz6f2l5ik3ijuk3alwsqplex4tbvin + openssl@1.0.2k /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-gyxmhgbam26d7y42omb7xrvkjjgmzwio + openssl@1.0.2k /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom + trilinos@12.12.1 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1-xupifcp5d4f53cobm6g3xzao577uzezs + zlib@1.2.8 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-bkyl5bhuep6fmhuxzkmhqy25qefjcvzc + zlib@1.2.8 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu + zlib@1.2.11 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb --------------------- Customizing Compilers @@ -1156,97 +1544,204 @@ compilers`` command is an alias for the command ``spack compiler list``. $ spack compilers ==> Available compilers - -- gcc ---------------------------------------------------------- - gcc@4.4.7 - - -- intel -------------------------------------------------------- - intel@16.0.3 intel@15.0.1 intel@14.0.0 intel@12.1.3 intel@10.0 - intel@16.0.2 intel@15.0.0 intel@13.1.1 intel@12.1.2 intel@9.1 - intel@16.0.1 intel@14.0.4 intel@13.1.0 intel@12.1.0 - intel@16.0.0 intel@14.0.3 intel@13.0.1 intel@12.0.4 - intel@15.0.4 intel@14.0.2 intel@13.0.0 intel@11.1 - intel@15.0.3 intel@14.0.1 intel@12.1.5 intel@10.1 - - -- pgi ---------------------------------------------------------- - pgi@16.5-0 pgi@15.7-0 pgi@14.7-0 pgi@13.2-0 pgi@11.10-0 pgi@9.0-4 - pgi@16.3-0 pgi@15.5-0 pgi@14.3-0 pgi@13.1-1 pgi@11.1-0 pgi@8.0-1 - pgi@16.1-0 pgi@15.1-0 pgi@13.10-0 pgi@12.8-0 pgi@10.9-0 pgi@7.1-3 - pgi@15.10-0 pgi@14.10-0 pgi@13.6-0 pgi@12.1-0 pgi@10.2-0 pgi@7.0-6 - -The compilers are maintained in a YAML file that can be hand-edited -for special cases. Spack also has tools to add compilers, and -compilers built with Spack can be added to the configuration. + -- clang ubuntu16.04-x86_64 ------------------------------------- + clang@3.8.0-2ubuntu4 clang@3.7.1-2ubuntu2 + + -- gcc ubuntu16.04-x86_64 --------------------------------------- + gcc@5.4.0 gcc@4.7 + +The compilers are maintained in a YAML file. Later in the tutorial you +will learn how to configure compilers by hand for special cases. Spack +also has tools to add compilers, and compilers built with Spack can be +added to the configuration. .. code-block:: console - $ spack install --fake gcc@6.1.0 - ==> Installing gcc - ==> gmp is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gmp-6.1.1-uwn4gfdtq3sywy5uf4f7znrh66oybikf + $ spack install --use-cache gcc + ==> libsigsegv is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz + ==> m4 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-r5envx3kqctwwflhd4qax4ahqtt6x43a + ==> pkg-config is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkg-config-0.29.2-ae2hwm7q57byfbxtymts55xppqwk7ecj + ==> ncurses is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.0-ukq4tccptm2rxd56d2bumqthnpcjzlez + ==> Installing readline + ==> Searching for binary cache of readline + ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-matio-1.5.9-3ibrutc6cs7x6ybyt5ni5n6djtq5okm2.spec.yaml + ######################################################################## 100.0% + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-trilinos-12.12.1-xupifcp5d4f53cobm6g3xzao577uzezs.spec.yaml + ######################################################################## 100.0% + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-parmetis-4.0.3-qk77g6aiqr3f2hsykg54zzuhlxcpdcmv.spec.yaml + ######################################################################## 100.0% + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-superlu-dist-5.2.2-65vot2le3ezooz7tj6eveovly725o44x.spec.yaml + ######################################################################## 100.0% + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-hypre-2.12.1-3psjg2ka2qa26jtgitlil4vglqr67anj.spec.yaml + ######################################################################## 100.0% + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-mumps-5.1.1-phvk6yhkzqed6gjsbah6dnhlesdclild.spec.yaml + ######################################################################## 100.0% + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-netcdf-4.4.1.1-rmx4uppnhpv6kq7bh7r46zfqevgdkkgw.spec.yaml + ######################################################################## 100.0% + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-netlib-scalapack-2.0.2-km7tsbgoyyywonyejkjoojskhc5knz3z.spec.yaml + ######################################################################## 100.0% + ==> Installing readline from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/readline-7.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-readline-7.0-gizxpch53zv5ufa62a2tb5lalcqgxbuc.spack + ######################################################################## 100.0% + gpg: Signature made Sun 12 Nov 2017 10:26:53 PM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed readline from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/readline-7.0-gizxpch53zv5ufa62a2tb5lalcqgxbuc + ==> Installing gdbm + ==> Searching for binary cache of gdbm + ==> Installing gdbm from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/gdbm-1.13/linux-ubuntu16.04-x86_64-gcc-5.4.0-gdbm-1.13-vdhoris6wdzzb2ykax2hz7qzgizk5h3t.spack + ######################################################################## 100.0% + gpg: Signature made Sun 12 Nov 2017 10:26:51 PM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed gdbm from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gdbm-1.13-vdhoris6wdzzb2ykax2hz7qzgizk5h3t + ==> Installing perl + ==> Searching for binary cache of perl + ==> Installing perl from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/perl-5.24.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-perl-5.24.1-mfzwy6y5mlbqpqvti4etpe3cgkmxkpi2.spack + ######################################################################## 100.0% + gpg: Signature made Sun 12 Nov 2017 10:27:19 PM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed perl from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/perl-5.24.1-mfzwy6y5mlbqpqvti4etpe3cgkmxkpi2 + ==> Installing autoconf + ==> Searching for binary cache of autoconf + ==> Installing autoconf from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/autoconf-2.69/linux-ubuntu16.04-x86_64-gcc-5.4.0-autoconf-2.69-bvabhjiklhi7c5742ixzs7hubhid3ax2.spack + ######################################################################## 100.0% + gpg: Signature made Sun 12 Nov 2017 10:27:22 PM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed autoconf from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/autoconf-2.69-bvabhjiklhi7c5742ixzs7hubhid3ax2 + ==> Installing automake + ==> Searching for binary cache of automake + ==> Installing automake from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/automake-1.15.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-automake-1.15.1-kaiefe4j2lsq6b32ncrclmbeoa5z25a5.spack + ######################################################################## 100.0% + gpg: Signature made Sun 12 Nov 2017 10:27:21 PM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed automake from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/automake-1.15.1-kaiefe4j2lsq6b32ncrclmbeoa5z25a5 + ==> libtool is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu + ==> Installing gmp + ==> Searching for binary cache of gmp + ==> Installing gmp from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/gmp-6.1.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-gmp-6.1.2-qc4qcfz4monpllc3nqupdo7vwinf73sw.spack + ######################################################################## 100.0% + gpg: Signature made Sun 12 Nov 2017 10:12:29 PM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed gmp from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gmp-6.1.2-qc4qcfz4monpllc3nqupdo7vwinf73sw ==> Installing isl - ==> gmp is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gmp-6.1.1-uwn4gfdtq3sywy5uf4f7znrh66oybikf - ==> Building isl [Package] - ==> Successfully installed isl - Fetch: . Build: 0.19s. Total: 0.19s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/isl-0.14-hs2w7mjjjaakkmbbv5yvfqf7yyzhorl6 - ==> Installing mpc - ==> gmp is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gmp-6.1.1-uwn4gfdtq3sywy5uf4f7znrh66oybikf + ==> Searching for binary cache of isl + ==> Installing isl from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/isl-0.18/linux-ubuntu16.04-x86_64-gcc-5.4.0-isl-0.18-vttqoutnsmjpm3ogb52rninksc7hq5ax.spack + ######################################################################## 100.0% + gpg: Signature made Sun 12 Nov 2017 10:12:28 PM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed isl from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/isl-0.18-vttqoutnsmjpm3ogb52rninksc7hq5ax ==> Installing mpfr - ==> gmp is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gmp-6.1.1-uwn4gfdtq3sywy5uf4f7znrh66oybikf - ==> Building mpfr [Package] - ==> Successfully installed mpfr - Fetch: . Build: 0.17s. Total: 0.17s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpfr-3.1.4-7kt5ij437khredfq4bvnyu22t3fmtfvt - ==> Building mpc [Package] - ==> Successfully installed mpc - Fetch: . Build: 0.28s. Total: 0.28s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpc-1.0.3-g5taq6lt3zuy5l2jtggi5lctxnl4la5u - ==> Installing binutils - ==> m4 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je - ==> Installing bison - ==> m4 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je - ==> Building bison [Package] - ==> Successfully installed bison - Fetch: . Build: 0.12s. Total: 0.12s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/bison-3.0.4-hkhfysfvq5l6rsns67g2htmkpxauvnwa - ==> Installing flex - ==> m4 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je - ==> bison is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/bison-3.0.4-hkhfysfvq5l6rsns67g2htmkpxauvnwa - ==> Building flex [Package] - ==> Successfully installed flex - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/flex-2.6.0-qd6d73rdfrozdrsdpimvl4tj7d5ps7qg - ==> Building binutils [Package] - ==> Successfully installed binutils - Fetch: . Build: 0.11s. Total: 0.11s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/binutils-2.27-iq2hry3gvaxszmwwbnll7njgdgaek56o - ==> mpfr is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpfr-3.1.4-7kt5ij437khredfq4bvnyu22t3fmtfvt - ==> Building gcc [Package] - ==> Successfully installed gcc - Fetch: . Build: 0.66s. Total: 0.66s. - [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gcc-6.1.0-j5576zbsot2ydljlthjzhsirsesnogvh - - + ==> Searching for binary cache of mpfr + ==> Installing mpfr from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpfr-3.1.5/linux-ubuntu16.04-x86_64-gcc-5.4.0-mpfr-3.1.5-mdi6irzvxcbemt7yredzr36dvo6ty4sl.spack + ######################################################################## 100.0% + gpg: Signature made Sun 12 Nov 2017 10:12:30 PM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed mpfr from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpfr-3.1.5-mdi6irzvxcbemt7yredzr36dvo6ty4sl + ==> Installing mpc + ==> Searching for binary cache of mpc + ==> Installing mpc from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpc-1.0.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-mpc-1.0.3-tumbpshu5hjxwextoudk5hmic6nspb3z.spack + ######################################################################## 100.0% + gpg: Signature made Sun 12 Nov 2017 10:12:29 PM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed mpc from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpc-1.0.3-tumbpshu5hjxwextoudk5hmic6nspb3z + ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb + ==> Installing gcc + ==> Searching for binary cache of gcc + ==> Installing gcc from binary cache + ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-gcc-7.2.0-k3vy57euyeuyvpotwf4wezfmpo3mrtrj.spack + ######################################################################## 100.0% + gpg: Signature made Sun 12 Nov 2017 10:16:31 PM UTC using RSA key ID 3B7C69B2 + gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown] + gpg: WARNING: This key is not certified with a trusted signature! + gpg: There is no indication that the signature belongs to the owner. + Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2 + ==> Relocating package from + /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack. + ==> Successfully installed gcc from binary cache + [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-k3vy57euyeuyvpotwf4wezfmpo3mrtrj $ spack find -p gcc ==> 1 installed packages. - -- linux-redhat6-x86_64 / gcc@4.4.7 ----------------------------- - gcc@6.1.0 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gcc-6.1.0-j5576zbsot2ydljlthjzhsirsesnogvh - + -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 ------------------------- + gcc@7.2.0 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-k3vy57euyeuyvpotwf4wezfmpo3mrtrj -If we had done a "real" install of gcc, we could add it to our -configuration now using the `spack compiler add` command, but we would -also be waiting for it to install. If we run the command now, it will -return no new compilers. +We can add gcc to Spack as an available compiler using the ``spack +compiler add`` command. This will allow future packages to build with +gcc@7.2.0. .. code-block:: console - $ spack compiler add ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gcc-6.1.0-j5576zbsot2ydljlthjzhsirsesnogvh/bin - ==> Found no new compilers + $ spack compiler add /home/ubuntu/becker/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-k3vy57euyeuyvpotwf4wezfmpo3mrtrj + ==> Added 1 new compiler to /home/ubuntu/.spack/linux/compilers.yaml + gcc@7.2.0 + ==> Compilers are defined in the following files: + /home/ubuntu/.spack/linux/compilers.yaml -If we had done a real install, the output would have been as follows: +We can also remove compilers from our configuration using ``spack compiler remove <compiler_spec>`` .. code-block:: console - $ spack compiler add ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gcc-6.1.0-j5576zbsot2ydljlthjzhsirsesnogvh/bin - ==> Added 1 new compiler to ~/.spack/linux/compilers.yaml - gcc@6.1.0 + $ spack compiler remove gcc@7.2.0 + ==> Removed compiler gcc@7.2.0 |