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-rw-r--r--lib/spack/docs/tutorial_basics.rst2121
1 files changed, 1308 insertions, 813 deletions
diff --git a/lib/spack/docs/tutorial_basics.rst b/lib/spack/docs/tutorial_basics.rst
index 5df4179952..d74159d7f6 100644
--- a/lib/spack/docs/tutorial_basics.rst
+++ b/lib/spack/docs/tutorial_basics.rst
@@ -4,17 +4,17 @@
Basic Installation Tutorial
=========================================
-This tutorial will guide you through the process of installing software
-using Spack. We will first cover the `spack install` command, focusing on
-the power of the spec syntax and the flexibility it gives to users. We
-will also cover the `spack find` command for viewing installed packages
-and the `spack uninstall` command. Finally, we will touch on how Spack
-manages compilers, especially as it relates to using Spack-built
-compilers within Spack. We will include full output from all of the
-commands demonstrated, although we will frequently call attention to only
-small portions of that output (or merely to the fact that it
-succeeded). The provided output is all from a cluster running Red Hat
-Enterprise Linux.
+This tutorial will guide you through the process of installing
+software using Spack. We will first cover the `spack install` command,
+focusing on the power of the spec syntax and the flexibility it gives
+to users. We will also cover the `spack find` command for viewing
+installed packages and the `spack uninstall` command. Finally, we will
+touch on how Spack manages compilers, especially as it relates to
+using Spack-built compilers within Spack. We will include full output
+from all of the commands demonstrated, although we will frequently
+call attention to only small portions of that output (or merely to the
+fact that it succeeded). The provided output is all from an AWS
+instance running Ubuntu 16.04
.. _basics-tutorial-install:
@@ -22,24 +22,31 @@ Enterprise Linux.
Installing Spack
----------------
-Spack works out of the box. Simply clone spack and get going.
+Spack works out of the box. Simply clone spack and get going. We will
+clone Spack and immediately checkout the most recent release, v0.11.0.
.. code-block:: console
- $ git clone https://github.com/spack/spack.git
- Initialized empty Git repository in ~/spack/.git/
- remote: Counting objects: 47125, done.
- remote: Compressing objects: 100% (68/68), done.
- remote: Total 47125 (delta 16), reused 2 (delta 2), pack-reused 47047
- Receiving objects: 100% (47125/47125), 12.02 MiB | 2.11 MiB/s, done.
- Resolving deltas: 100% (23044/23044), done.
+ $ git clone https://github.com/spack/spack
+ Cloning into 'spack'...
+ remote: Counting objects: 94561, done.
+ remote: Compressing objects: 100% (121/121), done.
+ remote: Total 94561 (delta 91), reused 121 (delta 48), pack-reused 94368
+ Receiving objects: 100% (94561/94561), 32.44 MiB | 31.88 MiB/s, done.
+ Resolving deltas: 100% (44914/44914), done.
+ Checking connectivity... done.
$ cd spack
+ $ git checkout releases/v0.11.0
+ Branch releases/v0.11.0 set up to track remote branch releases/v0.11.0 from origin.
+ Switched to a new branch 'releases/v0.11.0'
-Then add Spack to your path.
+Next add Spack to your path. Spack has some nice command line
+integration tools, so instead of simply appending to your ``PATH``
+variable, source the spack setup script. Then add Spack to your path.
.. code-block:: console
- $ export PATH=~/spack/bin:$PATH
+ $ . share/spack/setup-env.sh
You're good to go!
@@ -52,10 +59,10 @@ The ``spack list`` command shows available packages.
.. code-block:: console
$ spack list
- ==> 1016 packages.
- abinit hwloc piranha r-rjava
- ack hydra pixman r-rjson
- activeharmony hypre pkg-config r-rjsonio
+ ==> 2177 packages.
+ abinit libepoxy py-html5lib r-ncdf4
+ abyss libevent py-httpbin r-network
+ ack libevpath py-hypothesis r-networkd3abinit
...
The ``spack list`` command can also take a query string. Spack
@@ -64,11 +71,11 @@ we can view all available python packages.
.. code-block:: console
- $ spack list py
- ==> 129 packages.
- py-3to2 py-epydoc py-nestle py-pycparser py-six
- py-alabaster py-flake8 py-netcdf py-pydatalog py-sncosmo
- py-argcomplete py-funcsigs py-networkx py-pyelftools py-snowballstemmer
+ $ spack list py-
+ ==> 356 packages.
+ py-3to2 py-functools32 py-numpydoc py-pywavelets
+ py-4suite-xml py-future py-olefile py-pyyaml
+ py-abipy py-futures py-ont-fast5-api py-qtawesome
...
-------------------
@@ -76,26 +83,50 @@ Installing Packages
-------------------
Installing a package with Spack is very simple. To install a piece of
-software, simply type ``spack install <package_name>``
+software, simply type ``spack install <package_name>``.
.. code-block:: console
- $ spack install libelf
- ==> Installing libelf
- ==> Trying to fetch from ~/spack/var/spack/cache/libelf/libelf-0.8.13.tar.gz
- curl: (37) Couldn't open file ~/spack/var/spack/cache/libelf/libelf-0.8.13.tar.gz
- ==> Fetching from ~/spack/var/spack/cache/libelf/libelf-0.8.13.tar.gz failed.
- ==> Trying to fetch from http://www.mr511.de/software/libelf-0.8.13.tar.gz
- ################################################################################################################################################################################# 100.0%
- ==> Staging archive: ~/spack/var/spack/stage/libelf-0.8.13-csrt4qxfkhjgn5xg3zjpkir7xdnszl2a/libelf-0.8.13.tar.gz
- ==> Created stage in ~/spack/var/spack/stage/libelf-0.8.13-csrt4qxfkhjgn5xg3zjpkir7xdnszl2a
- ==> No patches needed for libelf
- ==> Building libelf [Package]
- ==> Executing phase : 'install'
- ==> Successfully installed libelf
- Fetch: 1.21s. Build: 8.42s. Total: 9.62s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.13-csrt4qxfkhjgn5xg3zjpkir7xdnszl2a
+ $ spack install zlib
+ ==> Installing zlib
+ ==> Fetching file:///home/ubuntu/becker/buildcache/zlib/zlib-1.2.11.tar.gz
+ curl: (37) Couldn't open file /home/ubuntu/becker/buildcache/zlib/zlib-1.2.11.tar.gz
+ ==> Fetching from file:///home/ubuntu/becker/buildcache/zlib/zlib-1.2.11.tar.gz failed.
+ ==> Fetching http://zlib.net/fossils/zlib-1.2.11.tar.gz
+ ######################################################################## 100.0%
+ ==> Staging archive: /home/ubuntu/test/spack/var/spack/stage/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb/zlib-1.2.11.tar.gz
+ ==> Created stage in /home/ubuntu/test/spack/var/spack/stage/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb
+ ==> No patches needed for zlib
+ ==> Building zlib [Package]
+ ==> Executing phase: 'install'
+ ==> Successfully installed zlib
+ Fetch: 0.58s. Build: 1.15s. Total: 1.73s.
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb
+
+Spack can install software either from source or from a binary
+cache. Packages in the binary cache are signed with GPG for
+security. For the tutorial we have prepared a binary cache so you
+don't have to wait on slow compilation from source. To be able to
+install from the binary cache, we will need to trust the GPG key that
+the binary cache was prepared with.
+.. code-block:: console
+
+ $ spack gpg trust ~/public.key
+ gpg: keybox '/home/ubuntu/test/spack/opt/spack/gpg/pubring.kbx' created
+ gpg: /home/ubuntu/test/spack/opt/spack/gpg/trustdb.gpg: trustdb created
+ gpg: key 3B7C69B2: public key "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" imported
+ gpg: Total number processed: 1
+ gpg: imported: 1
+
+The AWS instances and Docker images we use for the tutorial already
+have configuration files in place so that Spack knows where to look
+for binary packages (and that's the only change we've made). You'll
+learn more about configuring Spack later in the tutorial, but for now
+you will be able to install the rest of the packages in the tutorial
+from a binary cache by specifying ``spack install --use-cache
+<package_name>``. This will install the binary cached version if it
+exists and fall back on installing from source.
Spack's spec syntax is the interface by which we can request specific
configurations of the package. The ``%`` sigil is used to specify
@@ -103,18 +134,24 @@ compilers.
.. code-block:: console
- $ spack install libelf %intel
- ==> Installing libelf
- ==> Trying to fetch from ~/spack/var/spack/cache/libelf/libelf-0.8.13.tar.gz
- ################################################################################################################################################################################# 100.0%
- ==> Staging archive: ~/spack/var/spack/stage/libelf-0.8.13-7wgp32xksatkvw2tbssmehw2t5tnxndj/libelf-0.8.13.tar.gz
- ==> Created stage in ~/spack/var/spack/stage/libelf-0.8.13-7wgp32xksatkvw2tbssmehw2t5tnxndj
- ==> No patches needed for libelf
- ==> Building libelf [Package]
- ==> Executing phase : 'install'
- ==> Successfully installed libelf
- Fetch: 0.09s. Build: 50.64s. Total: 50.72s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/intel-16.0.3/libelf-0.8.13-7wgp32xksatkvw2tbssmehw2t5tnxndj
+ $ spack install --use-cache zlib %clang
+ ...
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-4.7-libsigsegv-2.11-eaqxu5mka32jpjif32rttiwebimrr2kb.spec.yaml
+ ######################################################################## 100.0%
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr.spec.yaml
+ ######################################################################## 100.0%
+ ==> Installing zlib from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.11/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-zlib-1.2.11-4pt75q7qq6lygf3hgnona4lyc2uwedul.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 01:05:02 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed zlib from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.11-4pt75q7qq6lygf3hgnona4lyc2uwedul
Note that this installation is located separately from the previous
one. We will discuss this in more detail later, but this is part of what
@@ -122,67 +159,59 @@ allows Spack to support arbitrarily versioned software.
You can check for particular versions before requesting them. We will
use the ``spack versions`` command to see the available versions, and then
-install a different version of ``libelf``.
+install a different version of ``zlib``.
.. code-block:: console
- $ spack versions libelf
+ $ spack versions zlib
==> Safe versions (already checksummed):
- 0.8.13
- 0.8.12
+ 1.2.11 1.2.8 1.2.3
==> Remote versions (not yet checksummed):
- 0.8.11
- 0.8.10
- 0.8.9
- 0.8.8
- 0.8.7
- 0.8.6
- 0.8.5
- 0.8.4
- 0.8.3
- 0.8.2
- 0.8.0
- 0.7.0
- 0.6.4
- 0.5.2
-
+ 1.2.10 1.2.7 1.2.5.1 1.2.4.2 1.2.3.7
+ ...
The ``@`` sigil is used to specify versions, both of packages and of
compilers.
.. code-block:: console
- $ spack install libelf @0.8.12
- ==> Installing libelf
- ==> Trying to fetch from ~/spack/var/spack/cache/libelf/libelf-0.8.12.tar.gz
- curl: (37) Couldn't open file ~/spack/var/spack/cache/libelf/libelf-0.8.12.tar.gz
- ==> Fetching from ~/spack/var/spack/cache/libelf/libelf-0.8.12.tar.gz failed.
- ==> Trying to fetch from http://www.mr511.de/software/libelf-0.8.12.tar.gz
- ################################################################################################################################################################################# 100.0%
- ==> Staging archive: ~/spack/var/spack/stage/libelf-0.8.12-ipggckv6i7h44iryzfa4dwdela32a7fy/libelf-0.8.12.tar.gz
- ==> Created stage in ~/spack/var/spack/stage/libelf-0.8.12-ipggckv6i7h44iryzfa4dwdela32a7fy
- ==> No patches needed for libelf
- ==> Building libelf [Package]
- ==> Executing phase : 'install'
- ==> Successfully installed libelf
- Fetch: 1.12s. Build: 7.88s. Total: 9.00s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.12-ipggckv6i7h44iryzfa4dwdela32a7fy
-
-
-
- $ spack install libelf %intel@15.0.4
- ==> Installing libelf
- ==> Trying to fetch from ~/spack/var/spack/cache/libelf/libelf-0.8.13.tar.gz
- ################################################################################################################################################################################# 100.0%
- ==> Staging archive: ~/spack/var/spack/stage/libelf-0.8.13-w33hrejdyqu2j2gggdswitls2zv6kdsi/libelf-0.8.13.tar.gz
- ==> Created stage in ~/spack/var/spack/stage/libelf-0.8.13-w33hrejdyqu2j2gggdswitls2zv6kdsi
- ==> No patches needed for libelf
- ==> Building libelf [Package]
- ==> Executing phase : 'install'
- ==> Successfully installed libelf
- Fetch: 0.09s. Build: 55.51s. Total: 55.60s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/intel-15.0.4/libelf-0.8.13-w33hrejdyqu2j2gggdswitls2zv6kdsi
-
+ $ spack install --use-cache zlib@1.2.8
+ ==> Installing zlib
+ ==> Searching for binary cache of zlib
+ ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-zlib-1.2.11-4pt75q7qq6lygf3hgnona4lyc2uwedul.spec.yaml
+ ######################################################################## 100.0%
+ ==> Installing zlib from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8/linux-ubuntu16.04-x86_64-gcc-5.4.0-zlib-1.2.8-bkyl5bhuep6fmhuxzkmhqy25qefjcvzc.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 01:05:03 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed zlib from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-bkyl5bhuep6fmhuxzkmhqy25qefjcvzc
+
+ $ spack install --use-cache zlib %gcc@4.7
+ ==> Installing zlib
+ ==> Searching for binary cache of zlib
+ ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-zlib-1.2.8-bkyl5bhuep6fmhuxzkmhqy25qefjcvzc.spec.yaml
+ ######################################################################## 100.0%
+ ==> Installing zlib from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-4.7/zlib-1.2.11/linux-ubuntu16.04-x86_64-gcc-4.7-zlib-1.2.11-bq2wtdxakpjytk2tjr7qu23i4py2fi2r.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 01:03:00 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed zlib from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-4.7/zlib-1.2.11-bq2wtdxakpjytk2tjr7qu23i4py2fi2r
The spec syntax also includes compiler flags. Spack accepts
``cppflags``, ``cflags``, ``cxxflags``, ``fflags``, ``ldflags``, and
@@ -192,19 +221,24 @@ into the compile line automatically by the Spack compiler wrappers.
.. code-block:: console
- $ spack install libelf @0.8.12 cppflags="-O3"
- ==> Installing libelf
- ==> Trying to fetch from ~/spack/var/spack/cache/libelf/libelf-0.8.12.tar.gz
- ################################################################################################################################################################################# 100.0%
- ==> Staging archive: ~/spack/var/spack/stage/libelf-0.8.12-vrv2ttbd34xlfoxy4jwt6qsjrcbalmmw/libelf-0.8.12.tar.gz
- ==> Created stage in ~/spack/var/spack/stage/libelf-0.8.12-vrv2ttbd34xlfoxy4jwt6qsjrcbalmmw
- ==> No patches needed for libelf
- ==> Building libelf [Package]
- ==> Executing phase : 'install'
- ==> Successfully installed libelf
- Fetch: 0.04s. Build: 7.95s. Total: 7.99s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.12-vrv2ttbd34xlfoxy4jwt6qsjrcbalmmw
-
+ $ spack install --use-cache zlib @1.2.8 cppflags=-O3
+ ==> Installing zlib
+ ==> Searching for binary cache of zlib
+ ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-4.7-zlib-1.2.11-bq2wtdxakpjytk2tjr7qu23i4py2fi2r.spec.yaml
+ ######################################################################## 100.0%
+ ==> Installing zlib from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8/linux-ubuntu16.04-x86_64-gcc-5.4.0-zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 01:03:00 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed zlib from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu
The ``spack find`` command is used to query installed packages. Note that
some packages appear identical with the default output. The ``-l`` flag
@@ -215,36 +249,32 @@ compiler flags of those packages.
$ spack find
==> 5 installed packages.
- -- linux-redhat6-x86_64 / gcc@4.4.7 -----------------------------
- libelf@0.8.12
- libelf@0.8.12
- libelf@0.8.13
-
- -- linux-redhat6-x86_64 / intel@15.0.4 --------------------------
- libelf@0.8.13
+ -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 --------------
+ zlib@1.2.11
- -- linux-redhat6-x86_64 / intel@16.0.3 --------------------------
- libelf@0.8.13
+ -- linux-ubuntu16.04-x86_64 / gcc@4.7 ---------------------------
+ zlib@1.2.11
+ -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
+ zlib@1.2.8 zlib@1.2.8 zlib@1.2.11
$ spack find -lf
==> 5 installed packages.
- -- linux-redhat6-x86_64 / gcc@4.4.7 -----------------------------
- ipggckv libelf@0.8.12%gcc
-
- vrv2ttb libelf@0.8.12%gcc cppflags="-O3"
+ -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 --------------
+ 4pt75q7 zlib@1.2.11%clang
- csrt4qx libelf@0.8.13%gcc
+ -- linux-ubuntu16.04-x86_64 / gcc@4.7 ---------------------------
+ bq2wtdx zlib@1.2.11%gcc
- -- linux-redhat6-x86_64 / intel@15.0.4 --------------------------
- w33hrej libelf@0.8.13%intel
+ -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
+ bkyl5bh zlib@1.2.8%gcc
- -- linux-redhat6-x86_64 / intel@16.0.3 --------------------------
- 7wgp32x libelf@0.8.13%intel
+ 64mns5m zlib@1.2.8%gcc cppflags="-O3"
+ 5nus6kn zlib@1.2.11%gcc
Spack generates a hash for each spec. This hash is a function of the full
provenance of the package, so any change to the spec affects the
@@ -256,24 +286,25 @@ existing package's hash matches the desired spec.
.. code-block:: console
- $ spack install libdwarf
- ==> Installing libdwarf
- ==> libelf is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.13-csrt4qxfkhjgn5xg3zjpkir7xdnszl2a
- ==> Can not find version 20160507 in url_list
- ==> Trying to fetch from ~/spack/var/spack/cache/libdwarf/libdwarf-20160507.tar.gz
- curl: (37) Couldn't open file ~/spack/var/spack/cache/libdwarf/libdwarf-20160507.tar.gz
- ==> Fetching from ~/spack/var/spack/cache/libdwarf/libdwarf-20160507.tar.gz failed.
- ==> Trying to fetch from http://www.prevanders.net/libdwarf-20160507.tar.gz
- ################################################################################################################################################################################# 100.0%
- ==> Staging archive: ~/spack/var/spack/stage/libdwarf-20160507-yfx6p3g3rkmqvcqbmtb34o6pln7pqvcz/libdwarf-20160507.tar.gz
- ==> Created stage in ~/spack/var/spack/stage/libdwarf-20160507-yfx6p3g3rkmqvcqbmtb34o6pln7pqvcz
- ==> No patches needed for libdwarf
- ==> Building libdwarf [Package]
- ==> Executing phase : 'install'
- ==> Successfully installed libdwarf
- Fetch: 1.56s. Build: 33.59s. Total: 35.15s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libdwarf-20160507-yfx6p3g3rkmqvcqbmtb34o6pln7pqvcz
-
+ $ spack install --use-cache openssl
+ ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb
+ ==> Installing openssl
+ ==> Searching for binary cache of openssl
+ ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu.spec.yaml
+ ######################################################################## 100.0%
+ ==> Installing openssl from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k/linux-ubuntu16.04-x86_64-gcc-5.4.0-openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 01:03:18 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed openssl from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom
Dependencies can be explicitly requested using the ``^`` sigil. Note that
the spec syntax is recursive. Anything we could specify about the
@@ -281,36 +312,43 @@ top-level package, we can also specify about a dependency using ``^``.
.. code-block:: console
- $ spack install libdwarf ^libelf @0.8.12 %intel
- ==> Installing libdwarf
- ==> Installing libelf
- ==> Trying to fetch from ~/spack/var/spack/cache/libelf/libelf-0.8.12.tar.gz
- ################################################################################################################################################################################# 100.0%
- ==> Staging archive: ~/spack/var/spack/stage/libelf-0.8.12-4blbe3qxqct3ymrfoxxnxysmybvbxay7/libelf-0.8.12.tar.gz
- ==> Created stage in ~/spack/var/spack/stage/libelf-0.8.12-4blbe3qxqct3ymrfoxxnxysmybvbxay7
- ==> No patches needed for libelf
- ==> Building libelf [Package]
- ==> Executing phase : 'install'
- ==> Successfully installed libelf
- Fetch: 0.04s. Build: 52.16s. Total: 52.19s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/intel-16.0.3/libelf-0.8.12-4blbe3qxqct3ymrfoxxnxysmybvbxay7
- ==> Can not find version 20160507 in url_list
- ==> Trying to fetch from ~/spack/var/spack/cache/libdwarf/libdwarf-20160507.tar.gz
- ################################################################################################################################################################################# 100.0%
- ==> Staging archive: ~/spack/var/spack/stage/libdwarf-20160507-csruprgucaujkfkrcywhwou7nbeis5fo/libdwarf-20160507.tar.gz
- ==> Created stage in ~/spack/var/spack/stage/libdwarf-20160507-csruprgucaujkfkrcywhwou7nbeis5fo
- ==> No patches needed for libdwarf
- ==> Building libdwarf [Package]
- ==> Executing phase : 'install'
- ==> Successfully installed libdwarf
- Fetch: 0.40s. Build: 2m 17.29s. Total: 2m 17.69s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/intel-16.0.3/libdwarf-20160507-csruprgucaujkfkrcywhwou7nbeis5fo
-
+ $ spack install --use-cache openssl ^zlib @1.2.8 %clang
+ ==> Installing zlib
+ ==> Searching for binary cache of zlib
+ ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom.spec.yaml
+ ######################################################################## 100.0%
+ ==> Installing zlib from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.8/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-zlib-1.2.8-i426yu3o6lyau5fv5ljwsajfkqxj5rl5.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 01:03:06 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed zlib from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.8-i426yu3o6lyau5fv5ljwsajfkqxj5rl5
+ ==> Installing openssl
+ ==> Searching for binary cache of openssl
+ ==> Installing openssl from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/openssl-1.0.2k/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-openssl-1.0.2k-ufruk7kj2fz3oupuat2jbgc2y7hg37vy.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 01:03:23 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed openssl from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/openssl-1.0.2k-ufruk7kj2fz3oupuat2jbgc2y7hg37vy
Packages can also be referred to from the command line by their package
hash. Using the ``spack find -lf`` command earlier we saw that the hash
-of our optimized installation of libelf (``cppflags="-O3"``) began with
-``vrv2ttb``. We can now explicitly build with that package without typing
+of our optimized installation of zlib (``cppflags="-O3"``) began with
+``64mns5m``. We can now explicitly build with that package without typing
the entire spec, by using the ``/`` sigil to refer to it by hash. As with
other tools like git, you do not need to specify an *entire* hash on the
command line. You can specify just enough digits to identify a hash
@@ -319,21 +357,27 @@ packages share the prefix) then spack will report an error.
.. code-block:: console
- $ spack install libdwarf ^/vrv2ttb
- ==> Installing libdwarf
- ==> libelf is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.12-vrv2ttbd34xlfoxy4jwt6qsjrcbalmmw
- ==> Can not find version 20160507 in url_list
- ==> Trying to fetch from ~/spack/var/spack/cache/libdwarf/libdwarf-20160507.tar.gz
- #################################################################################################################################################################################################################################################### 100.0%
- ==> Staging archive: ~/spack/var/spack/stage/libdwarf-20160507-dtg3tgnp7htccoly26gduqlrgvnwcp5t/libdwarf-20160507.tar.gz
- ==> Created stage in ~/spack/var/spack/stage/libdwarf-20160507-dtg3tgnp7htccoly26gduqlrgvnwcp5t
- ==> No patches needed for libdwarf
- ==> Building libdwarf [Package]
- ==> Executing phase : 'install'
- ==> Successfully installed libdwarf
- Fetch: 0.96s. Build: 24.03s. Total: 24.99s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libdwarf-20160507-dtg3tgnp7htccoly26gduqlrgvnwcp5t
-
+ $ spack install --use-cache openssl ^/64mn
+ ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu
+ ==> Installing openssl
+ ==> Searching for binary cache of openssl
+ ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-zlib-1.2.8-i426yu3o6lyau5fv5ljwsajfkqxj5rl5.spec.yaml
+ ######################################################################## 100.0%
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-clang-3.8.0-2ubuntu4-openssl-1.0.2k-ufruk7kj2fz3oupuat2jbgc2y7hg37vy.spec.yaml
+ ######################################################################## 100.0%
+ ==> Installing openssl from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k/linux-ubuntu16.04-x86_64-gcc-5.4.0-openssl-1.0.2k-gyxmhgbam26d7y42omb7xrvkjjgmzwio.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 01:03:12 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed openssl from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-gyxmhgbam26d7y42omb7xrvkjjgmzwio
The ``spack find`` command can also take a ``-d`` flag, which can show
dependency information. Note that each package has a top-level entry,
@@ -343,104 +387,198 @@ even if it also appears as a dependency.
$ spack find -ldf
==> 9 installed packages.
- -- linux-redhat6-x86_64 / gcc@4.4.7 -----------------------------
- dtg3tgn libdwarf@20160507%gcc
- vrv2ttb ^libelf@0.8.12%gcc cppflags="-O3"
+ -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 --------------
+ ufruk7k openssl@1.0.2k%clang
+ i426yu3 ^zlib@1.2.8%clang
- yfx6p3g libdwarf@20160507%gcc
- csrt4qx ^libelf@0.8.13%gcc
+ i426yu3 zlib@1.2.8%clang
- ipggckv libelf@0.8.12%gcc
+ 4pt75q7 zlib@1.2.11%clang
- vrv2ttb libelf@0.8.12%gcc cppflags="-O3"
- csrt4qx libelf@0.8.13%gcc
+ -- linux-ubuntu16.04-x86_64 / gcc@4.7 ---------------------------
+ bq2wtdx zlib@1.2.11%gcc
- -- linux-redhat6-x86_64 / intel@15.0.4 --------------------------
- w33hrej libelf@0.8.13%intel
+ -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
+ gyxmhgb openssl@1.0.2k%gcc
+ 64mns5m ^zlib@1.2.8%gcc cppflags="-O3"
+ 2woov64 openssl@1.0.2k%gcc
+ 5nus6kn ^zlib@1.2.11%gcc
- -- linux-redhat6-x86_64 / intel@16.0.3 --------------------------
- csruprg libdwarf@20160507%intel
- 4blbe3q ^libelf@0.8.12%intel
+ bkyl5bh zlib@1.2.8%gcc
- 4blbe3q libelf@0.8.12%intel
+ 64mns5m zlib@1.2.8%gcc cppflags="-O3"
- 7wgp32x libelf@0.8.13%intel
+ 5nus6kn zlib@1.2.11%gcc
-As we get to more complex packages, full installs will take too long to
-build in the time allotted for this tutorial. Our collaborators at CERN
-have been working on binary caching for Spack, which would allow for very
-fast installs of previously built packages. We are still working out the
-security ramifications of the feature, but it is coming soon.
-
-For now, we will switch to doing "fake" installs. When supplied with the
-``--fake`` flag (primarily used for debugging), Spack computes build
-metadata the same way it normally would, but it does not download the
-source or run the install script for a pacakge. We can use this to
-quickly demonstrate some of the more advanced Spack features in our
-limited tutorial time.
-
-``HDF5`` is an example of a more complicated package, with an MPI
-dependency. If we install it "out of the box," it will build with
-``openmpi``.
+Let's move on to slightly more complicated packages. ``HDF5`` is a
+good example of a more complicated package, with an MPI dependency. If
+we install it "out of the box," it will build with ``openmpi``.
.. code-block:: console
- $ spack install --fake hdf5
- ==> Installing hdf5
- ==> Installing zlib
- ==> Building zlib [Package]
- ==> Successfully installed zlib
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh
- ==> Installing openmpi
- ==> Installing hwloc
- ==> Installing libpciaccess
- ==> Installing util-macros
- ==> Building util-macros [Package]
- ==> Successfully installed util-macros
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/util-macros-1.19.0-pc6zhs4cnkmg2cv4et4fizsp6scuvacg
- ==> Installing libtool
- ==> Installing m4
+ $ spack install --use-cache hdf5
==> Installing libsigsegv
- ==> Building libsigsegv [Package]
- ==> Successfully installed libsigsegv
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libsigsegv-2.10-q4cok3yber7lhf3jswg6mysg7oi53unh
- ==> Building m4 [Package]
- ==> Successfully installed m4
- Fetch: . Build: 0.23s. Total: 0.23s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je
- ==> Building libtool [Package]
- ==> Successfully installed libtool
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libtool-2.4.6-rdx5nkfjwlvcanz5il3ys2pe34j4vxx5
+ ==> Searching for binary cache of libsigsegv
+ ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-openssl-1.0.2k-gyxmhgbam26d7y42omb7xrvkjjgmzwio.spec.yaml
+ ######################################################################## 100.0%
+ ==> Installing libsigsegv from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11/linux-ubuntu16.04-x86_64-gcc-5.4.0-libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 01:21:10 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed libsigsegv from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz
+ ==> Installing m4
+ ==> Searching for binary cache of m4
+ ==> Installing m4 from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18/linux-ubuntu16.04-x86_64-gcc-5.4.0-m4-1.4.18-r5envx3kqctwwflhd4qax4ahqtt6x43a.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 01:22:03 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed m4 from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-r5envx3kqctwwflhd4qax4ahqtt6x43a
+ ==> Installing libtool
+ ==> Searching for binary cache of libtool
+ ==> Installing libtool from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6/linux-ubuntu16.04-x86_64-gcc-5.4.0-libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 01:29:09 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed libtool from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu
==> Installing pkg-config
- ==> Building pkg-config [Package]
- ==> Successfully installed pkg-config
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/pkg-config-0.29.1-wpjnlzahdw6ahkrgmqyeugkj2zhv4tui
- ==> Building libpciaccess [Package]
- ==> Successfully installed libpciaccess
- Fetch: . Build: 0.10s. Total: 0.10s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libpciaccess-0.13.4-m2f6fpm22rpprq2ihkmfx6llf363264m
- ==> Building hwloc [Package]
- ==> Successfully installed hwloc
- Fetch: . Build: 0.23s. Total: 0.23s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hwloc-1.11.4-xpb6hbl2hsze25cgdgfnoppn6rchhzaz
- ==> Building openmpi [Package]
- ==> Successfully installed openmpi
- Fetch: . Build: 0.35s. Total: 0.35s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openmpi-2.0.1-j4cgoq4furxvr73pq72r2qgywgksw3qn
- ==> Building hdf5 [AutotoolsPackage]
- ==> Successfully installed hdf5
- Fetch: . Build: 0.61s. Total: 0.61s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-ezvtnox35albuaxqryuondweyjgeo6es
-
+ ==> Searching for binary cache of pkg-config
+ ==> Installing pkg-config from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkg-config-0.29.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-pkg-config-0.29.2-ae2hwm7q57byfbxtymts55xppqwk7ecj.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 01:30:13 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed pkg-config from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkg-config-0.29.2-ae2hwm7q57byfbxtymts55xppqwk7ecj
+ ==> Installing util-macros
+ ==> Searching for binary cache of util-macros
+ ==> Installing util-macros from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/util-macros-1.19.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 01:30:12 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed util-macros from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr
+ ==> Installing libpciaccess
+ ==> Searching for binary cache of libpciaccess
+ ==> Installing libpciaccess from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libpciaccess-0.13.5/linux-ubuntu16.04-x86_64-gcc-5.4.0-libpciaccess-0.13.5-5urc6tcjae26fbbd2wyfohoszhgxtbmc.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:30:23 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed libpciaccess from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libpciaccess-0.13.5-5urc6tcjae26fbbd2wyfohoszhgxtbmc
+ ==> Installing xz
+ ==> Searching for binary cache of xz
+ ==> Installing xz from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/xz-5.2.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-xz-5.2.3-htnq7wqdrqtof6uxqicdj3f7oe3xz6pw.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:30:34 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed xz from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/xz-5.2.3-htnq7wqdrqtof6uxqicdj3f7oe3xz6pw
+ ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb
+ ==> Installing libxml2
+ ==> Searching for binary cache of libxml2
+ ==> Installing libxml2 from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/libxml2-2.9.4/linux-ubuntu16.04-x86_64-gcc-5.4.0-libxml2-2.9.4-sxk64lvcxhqjflzesnf3ye4wakovwi45.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:30:23 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed libxml2 from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libxml2-2.9.4-sxk64lvcxhqjflzesnf3ye4wakovwi45
+ ==> Installing hwloc
+ ==> Searching for binary cache of hwloc
+ ==> Installing hwloc from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hwloc-1.11.8/linux-ubuntu16.04-x86_64-gcc-5.4.0-hwloc-1.11.8-ivg4d2e6anxwin4zbld2g4qlrbuquoyg.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:30:32 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed hwloc from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hwloc-1.11.8-ivg4d2e6anxwin4zbld2g4qlrbuquoyg
+ ==> Installing openmpi
+ ==> Searching for binary cache of openmpi
+ ==> Installing openmpi from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.0.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-openmpi-3.0.0-yo5qkfvumpmgmvlbalqcadu46j5bd52f.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:43:34 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed openmpi from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.0.0-yo5qkfvumpmgmvlbalqcadu46j5bd52f
+ ==> Installing hdf5
+ ==> Searching for binary cache of hdf5
+ ==> Installing hdf5 from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-bovz45ms24pmfr7hlckf56bxegfc4rea.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:53:08 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed hdf5 from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-bovz45ms24pmfr7hlckf56bxegfc4rea
Spack packages can also have variants. Boolean variants can be specified
using the ``+`` and ``~`` or ``-`` sigils. There are two sigils for
@@ -451,14 +589,28 @@ support.
.. code-block:: console
- $ spack install --fake hdf5~mpi
- ==> Installing hdf5
- ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh
- ==> Building hdf5 [AutotoolsPackage]
- ==> Successfully installed hdf5
- Fetch: . Build: 0.22s. Total: 0.22s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-twppaioxqn6lti4grgopnmhwcq3h2rpw
-
+ $ spack install --use-cache hdf5~mpi
+ ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb
+ ==> Installing hdf5
+ ==> Searching for binary cache of hdf5
+ ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-openmpi-3.0.0-yo5qkfvumpmgmvlbalqcadu46j5bd52f.spec.yaml
+ ######################################################################## 100.0%
+ ...
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr.spec.yaml
+ ######################################################################## 100.0%
+ ==> Installing hdf5 from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-pa6oqzfeqzkqkzqr2375fqyt3qggx3tr.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:53:40 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed hdf5 from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-pa6oqzfeqzkqkzqr2375fqyt3qggx3tr
We might also want to install HDF5 with a different MPI
implementation. While MPI is not a package itself, packages can depend on
@@ -475,84 +627,120 @@ by any of several providers.
.. code-block:: console
- $ spack install --fake hdf5+mpi ^mpich
+ $ spack install --use-cache hdf5+hl+mpi ^mpich
+ ==> Installing mpich
+ ==> Searching for binary cache of mpich
+ ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-pa6oqzfeqzkqkzqr2375fqyt3qggx3tr.spec.yaml
+ ######################################################################## 100.0%
+ ==> Installing mpich from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpich-3.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-mpich-3.2-cymrnoowcc4vdyvdnf5ypvob4cmdadk5.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:45:26 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed mpich from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpich-3.2-cymrnoowcc4vdyvdnf5ypvob4cmdadk5
+ ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb
==> Installing hdf5
- ==> mpich is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpich-3.2-5jlp2ndnsb67txggraglu47vjmayx5za
- ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh
- ==> Building hdf5 [AutotoolsPackage]
- ==> Successfully installed hdf5
- Fetch: . Build: 0.38s. Total: 0.38s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-j36yfw25i6gdd3q4vwlupgkpwic4ua6m
-
+ ==> Searching for binary cache of hdf5
+ ==> Installing hdf5 from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-e4gz6f2l5ik3ijuk3alwsqplex4tbvin.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:49:45 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed hdf5 from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-e4gz6f2l5ik3ijuk3alwsqplex4tbvin
We'll do a quick check in on what we have installed so far.
.. code-block:: console
$ spack find -ldf
- ==> 22 installed packages.
- -- linux-redhat6-x86_64 / gcc@4.4.7 -----------------------------
- twppaio hdf5@1.10.0-patch1%gcc
- ayc4jq7 ^zlib@1.2.8%gcc
+ ==> 23 installed packages.
+ -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 --------------
+ ufruk7k openssl@1.0.2k%clang
+ i426yu3 ^zlib@1.2.8%clang
+
+ i426yu3 zlib@1.2.8%clang
- j36yfw2 hdf5@1.10.0-patch1%gcc
- 5jlp2nd ^mpich@3.2%gcc
- ayc4jq7 ^zlib@1.2.8%gcc
+ 4pt75q7 zlib@1.2.11%clang
- ezvtnox hdf5@1.10.0-patch1%gcc
- j4cgoq4 ^openmpi@2.0.1%gcc
- xpb6hbl ^hwloc@1.11.4%gcc
- m2f6fpm ^libpciaccess@0.13.4%gcc
- ayc4jq7 ^zlib@1.2.8%gcc
- xpb6hbl hwloc@1.11.4%gcc
- m2f6fpm ^libpciaccess@0.13.4%gcc
+ -- linux-ubuntu16.04-x86_64 / gcc@4.7 ---------------------------
+ bq2wtdx zlib@1.2.11%gcc
- dtg3tgn libdwarf@20160507%gcc
- vrv2ttb ^libelf@0.8.12%gcc cppflags="-O3"
- yfx6p3g libdwarf@20160507%gcc
- csrt4qx ^libelf@0.8.13%gcc
+ -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
+ pa6oqzf hdf5@1.10.1%gcc
+ 5nus6kn ^zlib@1.2.11%gcc
- ipggckv libelf@0.8.12%gcc
+ bovz45m hdf5@1.10.1%gcc
+ yo5qkfv ^openmpi@3.0.0%gcc
+ ivg4d2e ^hwloc@1.11.8%gcc
+ 5urc6tc ^libpciaccess@0.13.5%gcc
+ sxk64lv ^libxml2@2.9.4%gcc
+ htnq7wq ^xz@5.2.3%gcc
+ 5nus6kn ^zlib@1.2.11%gcc
- vrv2ttb libelf@0.8.12%gcc cppflags="-O3"
+ e4gz6f2 hdf5@1.10.1%gcc
+ cymrnoo ^mpich@3.2%gcc
+ 5nus6kn ^zlib@1.2.11%gcc
- csrt4qx libelf@0.8.13%gcc
+ ivg4d2e hwloc@1.11.8%gcc
+ 5urc6tc ^libpciaccess@0.13.5%gcc
+ sxk64lv ^libxml2@2.9.4%gcc
+ htnq7wq ^xz@5.2.3%gcc
+ 5nus6kn ^zlib@1.2.11%gcc
- m2f6fpm libpciaccess@0.13.4%gcc
+ 5urc6tc libpciaccess@0.13.5%gcc
- q4cok3y libsigsegv@2.10%gcc
+ fypapcp libsigsegv@2.11%gcc
- rdx5nkf libtool@2.4.6%gcc
+ o2pfwjf libtool@2.4.6%gcc
- qijdzvh m4@1.4.17%gcc
- q4cok3y ^libsigsegv@2.10%gcc
+ sxk64lv libxml2@2.9.4%gcc
+ htnq7wq ^xz@5.2.3%gcc
+ 5nus6kn ^zlib@1.2.11%gcc
- 5jlp2nd mpich@3.2%gcc
+ r5envx3 m4@1.4.18%gcc
+ fypapcp ^libsigsegv@2.11%gcc
- j4cgoq4 openmpi@2.0.1%gcc
- xpb6hbl ^hwloc@1.11.4%gcc
- m2f6fpm ^libpciaccess@0.13.4%gcc
+ cymrnoo mpich@3.2%gcc
- wpjnlza pkg-config@0.29.1%gcc
+ yo5qkfv openmpi@3.0.0%gcc
+ ivg4d2e ^hwloc@1.11.8%gcc
+ 5urc6tc ^libpciaccess@0.13.5%gcc
+ sxk64lv ^libxml2@2.9.4%gcc
+ htnq7wq ^xz@5.2.3%gcc
+ 5nus6kn ^zlib@1.2.11%gcc
- pc6zhs4 util-macros@1.19.0%gcc
+ gyxmhgb openssl@1.0.2k%gcc
+ 64mns5m ^zlib@1.2.8%gcc cppflags="-O3"
- ayc4jq7 zlib@1.2.8%gcc
+ 2woov64 openssl@1.0.2k%gcc
+ 5nus6kn ^zlib@1.2.11%gcc
+ ae2hwm7 pkg-config@0.29.2%gcc
- -- linux-redhat6-x86_64 / intel@15.0.4 --------------------------
- w33hrej libelf@0.8.13%intel
+ milz7fm util-macros@1.19.1%gcc
+ htnq7wq xz@5.2.3%gcc
- -- linux-redhat6-x86_64 / intel@16.0.3 --------------------------
- csruprg libdwarf@20160507%intel
- 4blbe3q ^libelf@0.8.12%intel
+ bkyl5bh zlib@1.2.8%gcc
- 4blbe3q libelf@0.8.12%intel
+ 64mns5m zlib@1.2.8%gcc cppflags="-O3"
- 7wgp32x libelf@0.8.13%intel
+ 5nus6kn zlib@1.2.11%gcc
Spack models the dependencies of packages as a directed acyclic graph
@@ -562,7 +750,7 @@ DAG as a graph.
.. code-block:: console
- $ spack graph hdf5+mpi ^mpich
+ $ spack graph hdf5+hl+mpi ^mpich
o hdf5
|\
o | zlib
@@ -582,198 +770,277 @@ consistency requirements. It is entirely possible to have two packages
using different versions of a dependency to build, which obviously cannot
be done with linked dependencies.
-``HDF5`` is more complicated than our basic example of libelf and
-libdwarf, but it's still within the realm of software that an experienced
+``HDF5`` is more complicated than our basic example of zlib and
+openssl, but it's still within the realm of software that an experienced
HPC user could reasonably expect to install given a bit of time. Now
-let's look at a more complicated package.
+let's look at an even more complicated package.
.. code-block:: console
- $ spack install --fake trilinos
- ==> Installing trilinos
- ==> Installing superlu-dist
- ==> openmpi is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openmpi-2.0.1-j4cgoq4furxvr73pq72r2qgywgksw3qn
- ==> Installing parmetis
- ==> openmpi is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openmpi-2.0.1-j4cgoq4furxvr73pq72r2qgywgksw3qn
- ==> Installing cmake
+ $ spack install --use-cache trilinos
==> Installing bzip2
- ==> Building bzip2 [Package]
- ==> Successfully installed bzip2
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/bzip2-1.0.6-gll2xsahysy7ji5gkmfxwkofdt3mwjhs
- ==> expat is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/expat-2.2.0-mg5kwd3kluxdgorj32vzbp7aksg3vqej
+ ==> Searching for binary cache of bzip2
+ ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-e4gz6f2l5ik3ijuk3alwsqplex4tbvin.spec.yaml
+ ######################################################################## 100.0%
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-mpich-3.2-cymrnoowcc4vdyvdnf5ypvob4cmdadk5.spec.yaml
+ ######################################################################## 100.0%
+ ==> Installing bzip2 from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/bzip2-1.0.6/linux-ubuntu16.04-x86_64-gcc-5.4.0-bzip2-1.0.6-ufczdvsqt6edesm36xiucyry7myhj7e7.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:39:37 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed bzip2 from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/bzip2-1.0.6-ufczdvsqt6edesm36xiucyry7myhj7e7
+ ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb
+ ==> Installing boost
+ ==> Searching for binary cache of boost
+ ==> Installing boost from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/boost-1.65.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-boost-1.65.1-xxqnbqql5nup7rujer2ury3hsdgcumzb.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:43:14 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed boost from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/boost-1.65.1-xxqnbqql5nup7rujer2ury3hsdgcumzb
+ ==> pkg-config is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkg-config-0.29.2-ae2hwm7q57byfbxtymts55xppqwk7ecj
==> Installing ncurses
- ==> Building ncurses [Package]
- ==> Successfully installed ncurses
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/ncurses-6.0-fttg4astvrtq2buey4wq66tnyu7bgj2c
- ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh
- ==> Installing openssl
- ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh
- ==> Building openssl [Package]
- ==> Successfully installed openssl
- Fetch: . Build: 0.23s. Total: 0.23s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openssl-1.0.2j-kt5xyk2dkho6tzadnqlbnbujmljprylg
- ==> Installing libarchive
- ==> Installing lzma
- ==> Building lzma [Package]
- ==> Successfully installed lzma
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/lzma-4.32.7-hah2cdo3zbulz6yg5do6dvnfn6en5v5c
- ==> Installing nettle
- ==> m4 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je
- ==> Installing gmp
- ==> m4 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je
- ==> Building gmp [AutotoolsPackage]
- ==> Successfully installed gmp
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gmp-6.1.1-uwn4gfdtq3sywy5uf4f7znrh66oybikf
- ==> Building nettle [Package]
- ==> Successfully installed nettle
- Fetch: . Build: 0.18s. Total: 0.18s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/nettle-3.2-w4ieitifcmrldo4ra7as63apagzf56ja
- ==> bzip2 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/bzip2-1.0.6-gll2xsahysy7ji5gkmfxwkofdt3mwjhs
- ==> expat is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/expat-2.2.0-mg5kwd3kluxdgorj32vzbp7aksg3vqej
- ==> Installing libxml2
- ==> Installing xz
- ==> Building xz [Package]
- ==> Successfully installed xz
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/xz-5.2.2-bxh6cpyqqozazm5okvjqk23sww3gccnf
- ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh
- ==> Building libxml2 [Package]
- ==> Successfully installed libxml2
- Fetch: . Build: 0.35s. Total: 0.35s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libxml2-2.9.4-un323rppyu5qipkegyf7flmymvtmunrx
- ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh
- ==> Installing lz4
- ==> Building lz4 [Package]
- ==> Successfully installed lz4
- Fetch: . Build: 0.12s. Total: 0.12s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/lz4-131-ivy2fcaw7ywujx74weebdi5bsm7q4vkc
- ==> openssl is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openssl-1.0.2j-kt5xyk2dkho6tzadnqlbnbujmljprylg
- ==> xz is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/xz-5.2.2-bxh6cpyqqozazm5okvjqk23sww3gccnf
- ==> Installing lzo
- ==> Building lzo [AutotoolsPackage]
- ==> Successfully installed lzo
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/lzo-2.09-dlgnm74ozo6baactkft5oah2jre2ri2i
- ==> Building libarchive [Package]
- ==> Successfully installed libarchive
- Fetch: . Build: 1.35s. Total: 1.35s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libarchive-3.2.1-biq3kebw7vel7njusill7vv7mjldkqjv
- ==> xz is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/xz-5.2.2-bxh6cpyqqozazm5okvjqk23sww3gccnf
- ==> Installing curl
- ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh
- ==> openssl is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openssl-1.0.2j-kt5xyk2dkho6tzadnqlbnbujmljprylg
- ==> Building curl [Package]
- ==> Successfully installed curl
- Fetch: . Build: 0.36s. Total: 0.36s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/curl-7.50.3-oze4gqutj4x2isbkcn5ob2bhhxbskod4
- ==> Building cmake [Package]
- ==> Successfully installed cmake
- Fetch: . Build: 1.64s. Total: 1.64s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e
- ==> Installing metis
- ==> cmake is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e
- ==> Building metis [Package]
- ==> Successfully installed metis
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/metis-5.1.0-ithifyl4xvqbn76js23wsb4tjnztrbdv
- ==> Building parmetis [Package]
- ==> Successfully installed parmetis
- Fetch: . Build: 0.62s. Total: 0.62s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/parmetis-4.0.3-rtg6hml5t6acdcnxomn3l5zfiful4d2t
- ==> Installing openblas
- ==> Building openblas [Package]
- ==> Successfully installed openblas
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt
- ==> metis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/metis-5.1.0-ithifyl4xvqbn76js23wsb4tjnztrbdv
- ==> Building superlu-dist [Package]
- ==> Successfully installed superlu-dist
- Fetch: . Build: 0.85s. Total: 0.85s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/superlu-dist-5.1.1-25r6jlvkpjnkiuwt2rtbzhk3l3htuxs7
- ==> cmake is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e
+ ==> Searching for binary cache of ncurses
+ ==> Installing ncurses from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-ncurses-6.0-ukq4tccptm2rxd56d2bumqthnpcjzlez.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 01:06:38 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed ncurses from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.0-ukq4tccptm2rxd56d2bumqthnpcjzlez
+ ==> openssl is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom
+ ==> Installing cmake
+ ==> Searching for binary cache of cmake
+ ==> Installing cmake from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/cmake-3.9.4/linux-ubuntu16.04-x86_64-gcc-5.4.0-cmake-3.9.4-a2lyofsoxutyy4ihvzopizpbjubtdoem.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 01:22:03 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed cmake from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/cmake-3.9.4-a2lyofsoxutyy4ihvzopizpbjubtdoem
==> Installing glm
- ==> cmake is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e
- ==> Building glm [Package]
- ==> Successfully installed glm
- Fetch: . Build: 0.12s. Total: 0.12s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/glm-0.9.7.1-7a6oho4aerz7vftxd5ur7lywscht2iry
+ ==> Searching for binary cache of glm
+ ==> Installing glm from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/glm-0.9.7.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-glm-0.9.7.1-jnw622jwcbsymzj2fsx22omjl7tmvaws.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:30:38 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed glm from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/glm-0.9.7.1-jnw622jwcbsymzj2fsx22omjl7tmvaws
+ ==> libsigsegv is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz
+ ==> m4 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-r5envx3kqctwwflhd4qax4ahqtt6x43a
+ ==> libtool is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu
+ ==> util-macros is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/util-macros-1.19.1-milz7fmttmptcic2qdk5cnel7ll5sybr
+ ==> libpciaccess is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libpciaccess-0.13.5-5urc6tcjae26fbbd2wyfohoszhgxtbmc
+ ==> xz is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/xz-5.2.3-htnq7wqdrqtof6uxqicdj3f7oe3xz6pw
+ ==> libxml2 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libxml2-2.9.4-sxk64lvcxhqjflzesnf3ye4wakovwi45
+ ==> hwloc is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hwloc-1.11.8-ivg4d2e6anxwin4zbld2g4qlrbuquoyg
+ ==> openmpi is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openmpi-3.0.0-yo5qkfvumpmgmvlbalqcadu46j5bd52f
+ ==> Installing hdf5
+ ==> Searching for binary cache of hdf5
+ ==> Installing hdf5 from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hdf5-1.10.1-d73xxpvfxgd2z2ypmuuwtxhoxmzdglez.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:39:36 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed hdf5 from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-d73xxpvfxgd2z2ypmuuwtxhoxmzdglez
+ ==> Installing openblas
+ ==> Searching for binary cache of openblas
+ ==> Installing openblas from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/openblas-0.2.20/linux-ubuntu16.04-x86_64-gcc-5.4.0-openblas-0.2.20-4dahl6ltbpojei4s3stbqbq5iuuqlaxo.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:43:22 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed openblas from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openblas-0.2.20-4dahl6ltbpojei4s3stbqbq5iuuqlaxo
==> Installing hypre
- ==> openmpi is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openmpi-2.0.1-j4cgoq4furxvr73pq72r2qgywgksw3qn
- ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt
- ==> Building hypre [Package]
- ==> Successfully installed hypre
- Fetch: . Build: 0.61s. Total: 0.61s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hypre-2.11.1-lf7hcejiiww5peesh57quda72z67veit
- ==> metis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/metis-5.1.0-ithifyl4xvqbn76js23wsb4tjnztrbdv
+ ==> Searching for binary cache of hypre
+ ==> Installing hypre from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.12.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hypre-2.12.1-z3rgfzqc4gu4u4qvveyo2dqqzl2j463z.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:30:17 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed hypre from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.12.1-z3rgfzqc4gu4u4qvveyo2dqqzl2j463z
+ ==> Installing matio
+ ==> Searching for binary cache of matio
+ ==> Installing matio from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9/linux-ubuntu16.04-x86_64-gcc-5.4.0-matio-1.5.9-4ajrcuhdf5uktotnrfzufufy5vbd6any.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:30:24 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed matio from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9-4ajrcuhdf5uktotnrfzufufy5vbd6any
+ ==> Installing metis
+ ==> Searching for binary cache of metis
+ ==> Installing metis from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/metis-5.1.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-metis-5.1.0-m34qytcqsvsaduxyh3wevf3kj6pbzyw6.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:39:28 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed metis from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/metis-5.1.0-m34qytcqsvsaduxyh3wevf3kj6pbzyw6
==> Installing netlib-scalapack
- ==> openmpi is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openmpi-2.0.1-j4cgoq4furxvr73pq72r2qgywgksw3qn
- ==> cmake is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e
- ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt
- ==> Building netlib-scalapack [Package]
- ==> Successfully installed netlib-scalapack
- Fetch: . Build: 0.61s. Total: 0.61s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/netlib-scalapack-2.0.2-dvcanz2qq4dfcexznbhbmzbxfj43uz4q
- ==> Installing suite-sparse
- ==> Installing tbb
- ==> Building tbb [Package]
- ==> Successfully installed tbb
- Fetch: . Build: 0.12s. Total: 0.12s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/tbb-4.4.4-zawzkkhrmdonbjpj3a5bb6gkgnqlrjeu
- ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt
- ==> metis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/metis-5.1.0-ithifyl4xvqbn76js23wsb4tjnztrbdv
- ==> Building suite-sparse [Package]
- ==> Successfully installed suite-sparse
- Fetch: . Build: 0.49s. Total: 0.49s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/suite-sparse-4.5.3-lvur6hriy2j7xfjwh5punp3exwpynzm6
- ==> openmpi is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openmpi-2.0.1-j4cgoq4furxvr73pq72r2qgywgksw3qn
- ==> Installing netcdf
- ==> m4 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je
- ==> curl is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/curl-7.50.3-oze4gqutj4x2isbkcn5ob2bhhxbskod4
- ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh
- ==> hdf5 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-ezvtnox35albuaxqryuondweyjgeo6es
- ==> Building netcdf [Package]
- ==> Successfully installed netcdf
- Fetch: . Build: 0.90s. Total: 0.90s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/netcdf-4.4.1-tcl4zbrmdfrit2cqlaxig6xieu5h552j
+ ==> Searching for binary cache of netlib-scalapack
+ ==> Installing netlib-scalapack from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-netlib-scalapack-2.0.2-xudg7xypr63nte6ifrdsmllilxbrfiar.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:30:28 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed netlib-scalapack from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2-xudg7xypr63nte6ifrdsmllilxbrfiar
==> Installing mumps
- ==> netlib-scalapack is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/netlib-scalapack-2.0.2-dvcanz2qq4dfcexznbhbmzbxfj43uz4q
- ==> openmpi is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openmpi-2.0.1-j4cgoq4furxvr73pq72r2qgywgksw3qn
- ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt
- ==> Building mumps [Package]
- ==> Successfully installed mumps
- Fetch: . Build: 0.74s. Total: 0.74s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mumps-5.0.2-kr5r4nnx5tfcacxnk3ii5dsxbe6pu5fy
- ==> Installing matio
- ==> Building matio [Package]
- ==> Successfully installed matio
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/matio-1.5.2-4zrozucookychlvc4q53omp2zyfk2bed
- ==> Installing boost
- ==> bzip2 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/bzip2-1.0.6-gll2xsahysy7ji5gkmfxwkofdt3mwjhs
- ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh
- ==> Building boost [Package]
- ==> Successfully installed boost
- Fetch: . Build: 0.35s. Total: 0.35s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/boost-1.62.0-je7eqvzt74kezwhh55y5lwt5dy6pnali
- ==> parmetis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/parmetis-4.0.3-rtg6hml5t6acdcnxomn3l5zfiful4d2t
- ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt
- ==> hdf5 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-ezvtnox35albuaxqryuondweyjgeo6es
- ==> Building trilinos [Package]
- ==> Successfully installed trilinos
- Fetch: . Build: 2.63s. Total: 2.63s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/trilinos-12.8.1-uvd6dfd7x4uyvck4awo3r3frudihn4ar
-
-
-Now we're starting to see the power of Spack. Trilinos has 11 top level
-dependecies, many of which have dependencies of their own. Installing
-more complex packages can take days or weeks even for an experienced
-user. Although we've done a fake installation for the tutorial, a real
-installation of trilinos using Spack takes about 3 hours (depending on
-the system), but only 20 seconds of programmer time.
+ ==> Searching for binary cache of mumps
+ ==> Installing mumps from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-mumps-5.1.1-5a7hgodxoze47xqd32jcxhvzctex4ezx.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:30:15 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed mumps from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1-5a7hgodxoze47xqd32jcxhvzctex4ezx
+ ==> Installing netcdf
+ ==> Searching for binary cache of netcdf
+ ==> Installing netcdf from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.4.1.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-netcdf-4.4.1.1-gk2xxhbqijnrdwicawawcll4t3c7dvoj.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:43:37 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed netcdf from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.4.1.1-gk2xxhbqijnrdwicawawcll4t3c7dvoj
+ ==> Installing parmetis
+ ==> Searching for binary cache of parmetis
+ ==> Installing parmetis from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-parmetis-4.0.3-o4qdo7aylhejov2e5ii7tagrnw6qrrlo.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:39:37 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed parmetis from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3-o4qdo7aylhejov2e5ii7tagrnw6qrrlo
+ ==> Installing suite-sparse
+ ==> Searching for binary cache of suite-sparse
+ ==> Installing suite-sparse from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/suite-sparse-4.5.5/linux-ubuntu16.04-x86_64-gcc-5.4.0-suite-sparse-4.5.5-bg67crx4ltmxulnumuxjxqzrcobpmyzg.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:30:31 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed suite-sparse from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/suite-sparse-4.5.5-bg67crx4ltmxulnumuxjxqzrcobpmyzg
+ ==> Installing superlu-dist
+ ==> Searching for binary cache of superlu-dist
+ ==> Installing superlu-dist from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/superlu-dist-5.2.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-superlu-dist-5.2.2-gggsamgizi2dwmwxglgzbxvg6hkamhol.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:43:35 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed superlu-dist from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/superlu-dist-5.2.2-gggsamgizi2dwmwxglgzbxvg6hkamhol
+ ==> Installing trilinos
+ ==> Searching for binary cache of trilinos
+ ==> Installing trilinos from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-trilinos-12.12.1-istwe3b43b7etgtrhcuzjem3p5gonc6h.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 11:47:19 PM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed trilinos from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1-istwe3b43b7etgtrhcuzjem3p5gonc6h
+
+Now we're starting to see the power of Spack. Trilinos has 11 top
+level dependecies, many of which have dependencies of their
+own. Installing more complex packages can take days or weeks even for
+an experienced user. Although we've done a binary installation for the
+tutorial, a source installation of trilinos using Spack takes about 3
+hours (depending on the system), but only 20 seconds of programmer
+time.
Spack manages constistency of the entire DAG. Every MPI dependency will
be satisfied by the same configuration of MPI, etc. If we install
@@ -782,70 +1049,143 @@ with ``mpich``:
.. code-block:: console
- $ spack install --fake trilinos ^hdf5+mpi ^mpich
- ==> Installing trilinos
- ==> Installing superlu-dist
- ==> mpich is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpich-3.2-5jlp2ndnsb67txggraglu47vjmayx5za
- ==> metis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/metis-5.1.0-ithifyl4xvqbn76js23wsb4tjnztrbdv
- ==> Installing parmetis
- ==> mpich is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpich-3.2-5jlp2ndnsb67txggraglu47vjmayx5za
- ==> metis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/metis-5.1.0-ithifyl4xvqbn76js23wsb4tjnztrbdv
- ==> cmake is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e
- ==> Building parmetis [Package]
- ==> Successfully installed parmetis
- Fetch: . Build: 0.38s. Total: 0.38s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/parmetis-4.0.3-43kbtni6p5y446c6qdkybq4htj7ot4zn
- ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt
- ==> Building superlu-dist [Package]
- ==> Successfully installed superlu-dist
- Fetch: . Build: 0.61s. Total: 0.61s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/superlu-dist-5.1.1-46uuupehmonx5jicc6xnegnud2n5jqyl
- ==> cmake is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e
- ==> glm is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/glm-0.9.7.1-7a6oho4aerz7vftxd5ur7lywscht2iry
+ $ spack install --use-cache trilinos +hdf5 ^hdf5+hl+mpi ^mpich
+ ==> bzip2 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/bzip2-1.0.6-ufczdvsqt6edesm36xiucyry7myhj7e7
+ ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb
+ ==> boost is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/boost-1.65.1-xxqnbqql5nup7rujer2ury3hsdgcumzb
+ ==> pkg-config is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkg-config-0.29.2-ae2hwm7q57byfbxtymts55xppqwk7ecj
+ ==> ncurses is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.0-ukq4tccptm2rxd56d2bumqthnpcjzlez
+ ==> openssl is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom
+ ==> cmake is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/cmake-3.9.4-a2lyofsoxutyy4ihvzopizpbjubtdoem
+ ==> glm is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/glm-0.9.7.1-jnw622jwcbsymzj2fsx22omjl7tmvaws
+ ==> mpich is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpich-3.2-cymrnoowcc4vdyvdnf5ypvob4cmdadk5
+ ==> hdf5 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-e4gz6f2l5ik3ijuk3alwsqplex4tbvin
+ ==> openblas is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openblas-0.2.20-4dahl6ltbpojei4s3stbqbq5iuuqlaxo
==> Installing hypre
- ==> mpich is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpich-3.2-5jlp2ndnsb67txggraglu47vjmayx5za
- ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt
- ==> Building hypre [Package]
- ==> Successfully installed hypre
- Fetch: . Build: 0.37s. Total: 0.37s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hypre-2.11.1-6ajnyymoivs5apajd7thjisae36jv4lz
- ==> metis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/metis-5.1.0-ithifyl4xvqbn76js23wsb4tjnztrbdv
+ ==> Searching for binary cache of hypre
+ ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-netcdf-4.4.1.1-gk2xxhbqijnrdwicawawcll4t3c7dvoj.spec.yaml
+ ######################################################################## 100.0%
+ ...
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-bzip2-1.0.6-ufczdvsqt6edesm36xiucyry7myhj7e7.spec.yaml
+ ######################################################################## 100.0%
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-boost-1.65.1-xxqnbqql5nup7rujer2ury3hsdgcumzb.spec.yaml
+ ######################################################################## 100.0%
+ ==> Installing hypre from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.12.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-hypre-2.12.1-3psjg2ka2qa26jtgitlil4vglqr67anj.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:49:37 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed hypre from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hypre-2.12.1-3psjg2ka2qa26jtgitlil4vglqr67anj
+ ==> Installing matio
+ ==> Searching for binary cache of matio
+ ==> Installing matio from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9/linux-ubuntu16.04-x86_64-gcc-5.4.0-matio-1.5.9-3ibrutc6cs7x6ybyt5ni5n6djtq5okm2.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:45:26 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed matio from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/matio-1.5.9-3ibrutc6cs7x6ybyt5ni5n6djtq5okm2
+ ==> metis is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/metis-5.1.0-m34qytcqsvsaduxyh3wevf3kj6pbzyw6
==> Installing netlib-scalapack
- ==> mpich is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpich-3.2-5jlp2ndnsb67txggraglu47vjmayx5za
- ==> cmake is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/cmake-3.6.1-n2nkknrku6dvuneo3rjumim7axt7n36e
- ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt
- ==> Building netlib-scalapack [Package]
- ==> Successfully installed netlib-scalapack
- Fetch: . Build: 0.37s. Total: 0.37s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/netlib-scalapack-2.0.2-dayeep27omm26wksd3iqvbu3gezc2eoh
- ==> suite-sparse is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/suite-sparse-4.5.3-lvur6hriy2j7xfjwh5punp3exwpynzm6
- ==> Installing netcdf
- ==> m4 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je
- ==> curl is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/curl-7.50.3-oze4gqutj4x2isbkcn5ob2bhhxbskod4
- ==> zlib is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/zlib-1.2.8-ayc4jq7vxuzge5n444gutvskeytfdruh
- ==> hdf5 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-j36yfw25i6gdd3q4vwlupgkpwic4ua6m
- ==> Building netcdf [Package]
- ==> Successfully installed netcdf
- Fetch: . Build: 0.67s. Total: 0.67s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/netcdf-4.4.1-gfemi4jk4qltvp33xhtpkam7dozbqvhq
+ ==> Searching for binary cache of netlib-scalapack
+ ==> Installing netlib-scalapack from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-netlib-scalapack-2.0.2-km7tsbgoyyywonyejkjoojskhc5knz3z.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:49:49 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed netlib-scalapack from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netlib-scalapack-2.0.2-km7tsbgoyyywonyejkjoojskhc5knz3z
==> Installing mumps
- ==> mpich is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpich-3.2-5jlp2ndnsb67txggraglu47vjmayx5za
- ==> netlib-scalapack is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/netlib-scalapack-2.0.2-dayeep27omm26wksd3iqvbu3gezc2eoh
- ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt
- ==> Building mumps [Package]
- ==> Successfully installed mumps
- Fetch: . Build: 0.49s. Total: 0.49s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mumps-5.0.2-w7t5pl3jhhwitfiyer63zj6zv7idkt3m
- ==> mpich is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpich-3.2-5jlp2ndnsb67txggraglu47vjmayx5za
- ==> matio is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/matio-1.5.2-4zrozucookychlvc4q53omp2zyfk2bed
- ==> boost is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/boost-1.62.0-je7eqvzt74kezwhh55y5lwt5dy6pnali
- ==> parmetis is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/parmetis-4.0.3-43kbtni6p5y446c6qdkybq4htj7ot4zn
- ==> openblas is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/openblas-0.2.19-bwofa7fhff6od5zn56vy3j4eeyupsqgt
- ==> hdf5 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-j36yfw25i6gdd3q4vwlupgkpwic4ua6m
- ==> Building trilinos [Package]
- ==> Successfully installed trilinos
- Fetch: . Build: 2.42s. Total: 2.42s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/trilinos-12.8.1-ffwrpxnq7lhiw2abxn2u7ffr4jjsdwep
+ ==> Searching for binary cache of mumps
+ ==> Installing mumps from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-mumps-5.1.1-phvk6yhkzqed6gjsbah6dnhlesdclild.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:45:28 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed mumps from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mumps-5.1.1-phvk6yhkzqed6gjsbah6dnhlesdclild
+ ==> libsigsegv is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz
+ ==> m4 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-r5envx3kqctwwflhd4qax4ahqtt6x43a
+ ==> Installing netcdf
+ ==> Searching for binary cache of netcdf
+ ==> Installing netcdf from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.4.1.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-netcdf-4.4.1.1-rmx4uppnhpv6kq7bh7r46zfqevgdkkgw.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:49:38 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed netcdf from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/netcdf-4.4.1.1-rmx4uppnhpv6kq7bh7r46zfqevgdkkgw
+ ==> Installing parmetis
+ ==> Searching for binary cache of parmetis
+ ==> Installing parmetis from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-parmetis-4.0.3-qk77g6aiqr3f2hsykg54zzuhlxcpdcmv.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:45:14 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed parmetis from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/parmetis-4.0.3-qk77g6aiqr3f2hsykg54zzuhlxcpdcmv
+ ==> suite-sparse is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/suite-sparse-4.5.5-bg67crx4ltmxulnumuxjxqzrcobpmyzg
+ ==> Installing superlu-dist
+ ==> Searching for binary cache of superlu-dist
+ ==> Installing superlu-dist from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/superlu-dist-5.2.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-superlu-dist-5.2.2-65vot2le3ezooz7tj6eveovly725o44x.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sat 11 Nov 2017 12:45:14 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed superlu-dist from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/superlu-dist-5.2.2-65vot2le3ezooz7tj6eveovly725o44x
+ ==> Installing trilinos
+ ==> Searching for binary cache of trilinos
+ ==> Installing trilinos from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-trilinos-12.12.1-xupifcp5d4f53cobm6g3xzao577uzezs.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sun 12 Nov 2017 12:04:58 AM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed trilinos from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1-xupifcp5d4f53cobm6g3xzao577uzezs
+
We see that every package in the trilinos DAG that depends on MPI now
uses ``mpich``.
@@ -854,51 +1194,46 @@ uses ``mpich``.
$ spack find -d trilinos
==> 2 installed packages.
- -- linux-redhat6-x86_64 / gcc@4.4.7 -----------------------------
- trilinos@12.8.1
- ^boost@1.62.0
+ -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
+ trilinos@12.12.1
+ ^boost@1.65.1
^bzip2@1.0.6
- ^zlib@1.2.8
+ ^zlib@1.2.11
^glm@0.9.7.1
- ^hdf5@1.10.0-patch1
- ^mpich@3.2
- ^hypre@2.11.1
- ^openblas@0.2.19
- ^matio@1.5.2
+ ^hdf5@1.10.1
+ ^openmpi@3.0.0
+ ^hwloc@1.11.8
+ ^libpciaccess@0.13.5
+ ^libxml2@2.9.4
+ ^xz@5.2.3
+ ^hypre@2.12.1
+ ^openblas@0.2.20
+ ^matio@1.5.9
^metis@5.1.0
- ^mumps@5.0.2
+ ^mumps@5.1.1
^netlib-scalapack@2.0.2
- ^netcdf@4.4.1
- ^curl@7.50.3
- ^openssl@1.0.2j
+ ^netcdf@4.4.1.1
^parmetis@4.0.3
- ^suite-sparse@4.5.3
- ^tbb@4.4.4
- ^superlu-dist@5.1.1
+ ^suite-sparse@4.5.5
+ ^superlu-dist@5.2.2
- trilinos@12.8.1
- ^boost@1.62.0
+ trilinos@12.12.1
+ ^boost@1.65.1
^bzip2@1.0.6
- ^zlib@1.2.8
+ ^zlib@1.2.11
^glm@0.9.7.1
- ^hdf5@1.10.0-patch1
- ^openmpi@2.0.1
- ^hwloc@1.11.4
- ^libpciaccess@0.13.4
- ^hypre@2.11.1
- ^openblas@0.2.19
- ^matio@1.5.2
+ ^hdf5@1.10.1
+ ^mpich@3.2
+ ^hypre@2.12.1
+ ^openblas@0.2.20
+ ^matio@1.5.9
^metis@5.1.0
- ^mumps@5.0.2
+ ^mumps@5.1.1
^netlib-scalapack@2.0.2
- ^netcdf@4.4.1
- ^curl@7.50.3
- ^openssl@1.0.2j
+ ^netcdf@4.4.1.1
^parmetis@4.0.3
- ^suite-sparse@4.5.3
- ^tbb@4.4.4
- ^superlu-dist@5.1.1
-
+ ^suite-sparse@4.5.5
+ ^superlu-dist@5.2.2
As we discussed before, the ``spack find -d`` command shows the
dependency information as a tree. While that is often sufficient, many
@@ -917,35 +1252,101 @@ command shows the full DAG of the dependency information.
| | | | |\
| | | | | |\
| | | | | | |\
- | o | | | | | | netcdf
- | |\ \ \ \ \ \ \
- | | |\ \ \ \ \ \ \
- | | | o | | | | | | curl
- | | |/| | | | | | |
- | |/| | | | | | | |
- | | | o | | | | | | openssl
- | | |/ / / / / / /
- | |/| | | | | | |
- | | o | | | | | | hdf5
- | |/| | | | | | |
- | | |/ / / / / /
- | o | | | | | | zlib
- | / / / / / /
- o | | | | | | swig
- o | | | | | | pcre
- / / / / / /
- o | | | | | mpi
- / / / / /
- o | | | | matio
- / / / /
- o | | | lapack
- / / /
- o | | glm
- / /
- o | boost
- /
- o blas
-
+ | | | | | | | |\
+ | | | | | | | | |\
+ | | | | | | | | | |\
+ | | | | | | | | | | |\
+ | | | | | | | | | | | |\
+ | | | | | | | | | | | | |\
+ | | | | | | | | | | | | | |\
+ o | | | | | | | | | | | | | | superlu-dist
+ |\ \ \ \ \ \ \ \ \ \ \ \ \ \ \
+ | |_|/ / / / / / / / / / / / /
+ |/| | | | | | | | | | | | | |
+ | |\ \ \ \ \ \ \ \ \ \ \ \ \ \
+ | | |_|/ / / / / / / / / / / /
+ | |/| | | | | | | | | | | | |
+ | | |\ \ \ \ \ \ \ \ \ \ \ \ \
+ | | | |_|/ / / / / / / / / / /
+ | | |/| | | | | | | | | | | |
+ | | | | |_|_|/ / / / / / / /
+ | | | |/| | | | | | | | | |
+ | | | | o | | | | | | | | | suite-sparse
+ | | | |/| | | | | | | | | |
+ | | |/|/ / / / / / / / / /
+ o | | | | | | | | | | | | parmetis
+ |\| | | | | | | | | | | |
+ |\ \ \ \ \ \ \ \ \ \ \ \ \
+ | |_|_|/ / / / / / / / / /
+ |/| | | | | | | | | | | |
+ | | |_|_|_|_|_|_|_|/ / /
+ | |/| | | | | | | | | |
+ | | | | | | o | | | | | mumps
+ | | | |_|_|/| | | | | |
+ | | |/| |_|/| | | | | |
+ | | | |/| |/ / / / / /
+ | | | | |/| | | | | |
+ | | | | o | | | | | | netlib-scalapack
+ | | |_|/| | | | | | |
+ | |/| |/| | | | | | |
+ | | |/|/ / / / / / /
+ o | | | | | | | | | metis
+ |/ / / / / / / / /
+ | | | | | | | o | glm
+ | |_|_|_|_|_|/ /
+ |/| | | | | | |
+ o | | | | | | | cmake
+ |\ \ \ \ \ \ \ \
+ o | | | | | | | | openssl
+ | | | | o | | | | netcdf
+ | |_|_|/| | | | |
+ |/| | |/| | | | |
+ | | |/| | | | | |
+ | | | | |\ \ \ \ \
+ | | | | | | |_|/ /
+ | | | | | |/| | |
+ | | | | | | o | | matio
+ | |_|_|_|_|/| | |
+ |/| | | | |/ / /
+ | | | | | | o | hypre
+ | | | |_|_|/| |
+ | | |/| |_|/ /
+ | | | |/| | |
+ | | | | | o | hdf5
+ | |_|_|_|/| |
+ |/| | |_|/ /
+ | | |/| | |
+ | | o | | | openmpi
+ | | o | | | hwloc
+ | | |\ \ \ \
+ | | | |\ \ \ \
+ | | | o | | | | libxml2
+ | |_|/| | | | |
+ |/| |/| | | | |
+ | | | | | | | o boost
+ | |_|_|_|_|_|/|
+ |/| | | | | | |
+ o | | | | | | | zlib
+ / / / / / / /
+ | | o | | | | xz
+ | | / / / /
+ | | o | | | libpciaccess
+ | |/| | | |
+ | | |\ \ \ \
+ | | o | | | | util-macros
+ | | / / / /
+ o | | | | | ncurses
+ |/ / / / /
+ o | | | | pkg-config
+ / / / /
+ | o | | openblas
+ | / /
+ o | | libtool
+ |/ /
+ o | m4
+ o | libsigsegv
+ /
+ o bzip2
You can control how the output is displayed with a number of options.
@@ -963,100 +1364,92 @@ complicated packages. The output can be changed to the ``graphviz``
Uninstalling Packages
---------------------
-Earlier we installed many configurations each of libelf and
-libdwarf. Now we will go through and uninstall some of those packages
+Earlier we installed many configurations each of zlib and
+openssl. Now we will go through and uninstall some of those packages
that we didn't really need.
.. code-block:: console
- $ spack find -d libdwarf
+ $ spack find -d openssl
==> 3 installed packages.
- -- linux-redhat6-x86_64 / gcc@4.4.7 -----------------------------
- libdwarf@20160507
- ^libelf@0.8.12
+ -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 --------------
+ openssl@1.0.2k
+ ^zlib@1.2.8
- libdwarf@20160507
- ^libelf@0.8.13
+ -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
+ openssl@1.0.2k
+ ^zlib@1.2.8
+ openssl@1.0.2k
+ ^zlib@1.2.11
- -- linux-redhat6-x86_64 / intel@16.0.3 --------------------------
- libdwarf@20160507
- ^libelf@0.8.12
-
- $ spack find libelf
+ $ spack find zlib
==> 6 installed packages.
- -- linux-redhat6-x86_64 / gcc@4.4.7 -----------------------------
- libelf@0.8.12 libelf@0.8.12 libelf@0.8.13
-
- -- linux-redhat6-x86_64 / intel@15.0.4 --------------------------
- libelf@0.8.13
+ -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 --------------
+ zlib@1.2.8 zlib@1.2.11
- -- linux-redhat6-x86_64 / intel@16.0.3 --------------------------
- libelf@0.8.12 libelf@0.8.13
+ -- linux-ubuntu16.04-x86_64 / gcc@4.7 ---------------------------
+ zlib@1.2.11
+ -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
+ zlib@1.2.8 zlib@1.2.8 zlib@1.2.11
We can uninstall packages by spec using the same syntax as install.
.. code-block:: console
- $ spack uninstall libelf%intel@15.0.4
- ==> The following packages will be uninstalled :
-
- -- linux-redhat6-x86_64 / intel@15.0.4 --------------------------
- w33hrej libelf@0.8.13%intel
-
-
- ==> Do you want to proceed? [y/n] y
- ==> Successfully uninstalled libelf@0.8.13%intel@15.0.4 arch=linux-redhat6-x86_64-w33hrej
+ $ spack uninstall zlib %gcc@4.7
+ ==> The following packages will be uninstalled:
+ -- linux-ubuntu16.04-x86_64 / gcc@4.7 ---------------------------
+ bq2wtdx zlib@1.2.11%gcc+optimize+pic+shared
+ ==> Do you want to proceed? [y/N] y
+ ==> Successfully uninstalled zlib@1.2.11%gcc@4.7+optimize+pic+shared arch=linux-ubuntu16.04-x86_64 /bq2wtdx
- $ spack find -lf libelf
+ $ spack find -lf zlib
==> 5 installed packages.
- -- linux-redhat6-x86_64 / gcc@4.4.7 -----------------------------
- ipggckv libelf@0.8.12%gcc
+ -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 --------------
+ i426yu3 zlib@1.2.8%clang
- vrv2ttb libelf@0.8.12%gcc cppflags="-O3"
+ 4pt75q7 zlib@1.2.11%clang
- csrt4qx libelf@0.8.13%gcc
+ -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
+ bkyl5bh zlib@1.2.8%gcc
- -- linux-redhat6-x86_64 / intel@16.0.3 --------------------------
- 4blbe3q libelf@0.8.12%intel
+ 64mns5m zlib@1.2.8%gcc cppflags="-O3"
- 7wgp32x libelf@0.8.13%intel
-
-
-We can uninstall packages by referring only to their hash.
+ 5nus6kn zlib@1.2.11%gcc
+We can also uninstall packages by referring only to their hash.
We can use either ``-f`` (force) or ``-R`` (remove dependents as well) to
remove packages that are required by another installed package.
.. code-block:: console
- $ spack uninstall /4blb
- ==> Error: Will not uninstall libelf@0.8.12%intel@16.0.3-4blbe3q
+ $ spack uninstall zlib/i426
+ ==> Error: Will not uninstall zlib@1.2.8%clang@3.8.0-2ubuntu4/i426yu3
The following packages depend on it:
- -- linux-redhat6-x86_64 / intel@16.0.3 --------------------------
- csruprg libdwarf@20160507%intel
+ -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 --------------
+ ufruk7k openssl@1.0.2k%clang
- ==> Error: You can use spack uninstall --dependents to uninstall these dependencies as well
- $ spack uninstall -R /4blb
- ==> The following packages will be uninstalled :
+ ==> Error: Use \`spack uninstall --dependents\` to uninstall these dependencies as well.
- -- linux-redhat6-x86_64 / intel@16.0.3 --------------------------
- csruprg libdwarf@20160507%intel
+ $ spack uninstall -R zlib/i426
+ ==> The following packages will be uninstalled:
- 4blbe3q libelf@0.8.12%intel
+ -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 --------------
+ ufruk7k openssl@1.0.2k%clang
+ i426yu3 zlib@1.2.8%clang+optimize+pic+shared
- ==> Do you want to proceed? [y/n] y
- ==> Successfully uninstalled libdwarf@20160507%intel@16.0.3 arch=linux-redhat6-x86_64-csruprg
- ==> Successfully uninstalled libelf@0.8.12%intel@16.0.3 arch=linux-redhat6-x86_64-4blbe3q
-
+ ==> Do you want to proceed? [y/N] y
+ ==> Successfully uninstalled openssl@1.0.2k%clang@3.8.0-2ubuntu4 arch=linux-ubuntu16.04-x86_64 /ufruk7k
+ ==> Successfully uninstalled zlib@1.2.8%clang@3.8.0-2ubuntu4+optimize+pic+shared arch=linux-ubuntu16.04-x86_64 /i426yu3
Spack will not uninstall packages that are not sufficiently
specified. The ``-a`` (all) flag can be used to uninstall multiple
@@ -1067,27 +1460,25 @@ packages at once.
$ spack uninstall trilinos
==> Error: trilinos matches multiple packages:
- -- linux-redhat6-x86_64 / gcc@4.4.7 -----------------------------
- ffwrpxn trilinos@12.8.1%gcc+boost~debug+hdf5+hypre+metis+mumps~python+shared+suite-sparse+superlu-dist
+ -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
+ istwe3b trilinos@12.12.1%gcc~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~dtk+epetra+epetraext+exodus+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2+instantiate~instantiate_cmplx~intrepid~intrepid2+metis+ml+muelu+mumps~nox~openmp~pnetcdf~python~rol+sacado~shards+shared~stk+suite-sparse~superlu+superlu-dist+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2
- uvd6dfd trilinos@12.8.1%gcc+boost~debug+hdf5+hypre+metis+mumps~python+shared+suite-sparse+superlu-dist
+ xupifcp trilinos@12.12.1%gcc~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~dtk+epetra+epetraext+exodus+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2+instantiate~instantiate_cmplx~intrepid~intrepid2+metis+ml+muelu+mumps~nox~openmp~pnetcdf~python~rol+sacado~shards+shared~stk+suite-sparse~superlu+superlu-dist+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2
==> Error: You can either:
- a) Use a more specific spec, or
- b) use spack uninstall -a to uninstall ALL matching specs.
-
+ a) use a more specific spec, or
+ b) use `spack uninstall --all` to uninstall ALL matching specs.
- $ spack uninstall /ffwr
- ==> The following packages will be uninstalled :
+ $ spack uninstall /istw
+ ==> The following packages will be uninstalled:
- -- linux-redhat6-x86_64 / gcc@4.4.7 -----------------------------
- ffwrpxn trilinos@12.8.1%gcc+boost~debug+hdf5+hypre+metis+mumps~python+shared+suite-sparse+superlu-dist
+ -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
+ istwe3b trilinos@12.12.1%gcc~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~dtk+epetra+epetraext+exodus+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2+instantiate~instantiate_cmplx~intrepid~intrepid2+metis+ml+muelu+mumps~nox~openmp~pnetcdf~python~rol+sacado~shards+shared~stk+suite-sparse~superlu+superlu-dist+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2
-
- ==> Do you want to proceed? [y/n] y
- ==> Successfully uninstalled trilinos@12.8.1%gcc@4.4.7+boost~debug+hdf5+hypre+metis+mumps~python+shared+suite-sparse+superlu-dist arch=linux-redhat6-x86_64-ffwrpxn
+ ==> Do you want to proceed? [y/N] y
+ ==> Successfully uninstalled trilinos@12.12.1%gcc@5.4.0~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost build_type=RelWithDebInfo ~dtk+epetra+epetraext+exodus+fortran~fortrilinos+gtest+hdf5+hypre+ifpack+ifpack2+instantiate~instantiate_cmplx~intrepid~intrepid2+metis+ml+muelu+mumps~nox~openmp~pnetcdf~python~rol+sacado~shards+shared~stk+suite-sparse~superlu+superlu-dist+teuchos+tpetra~x11~xsdkflags~zlib+zoltan+zoltan2 arch=linux-ubuntu16.04-x86_64 /istwe3b
-----------------------------
Advanced ``spack find`` Usage
@@ -1099,24 +1490,22 @@ already covered in the :ref:`basics-tutorial-install` and
The ``spack find`` command can accept what we call "anonymous specs."
These are expressions in spec syntax that do not contain a package
-name. For example, ``spack find %intel`` will return every package built
-with the intel compiler, and ``spack find cppflags="-O3"`` will
+name. For example, ``spack find ^mpich`` will return every installed
+package that depends on mpich, and ``spack find cppflags="-O3"`` will
return every package which was built with ``cppflags="-O3"``.
.. code-block:: console
- $ spack find %intel
- ==> 1 installed packages.
- -- linux-redhat6-x86_64 / intel@16.0.3 --------------------------
- libelf@0.8.13
-
+ $ spack find ^mpich
+ ==> 9 installed packages.
+ -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
+ hdf5@1.10.1 hypre@2.12.1 matio@1.5.9 mumps@5.1.1 netcdf@4.4.1.1 netlib-scalapack@2.0.2 parmetis@4.0.3 superlu-dist@5.2.2 trilinos@12.12.1
- $ spack find cppflags="-O3"
+ $ spack find cppflags=-O3
==> 1 installed packages.
- -- linux-redhat6-x86_64 / gcc@4.4.7 -----------------------------
- libelf@0.8.12
-
+ -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
+ zlib@1.2.8
The ``find`` command can also show which packages were installed
explicitly (rather than pulled in as a dependency) using the ``-e``
@@ -1128,20 +1517,19 @@ command.
$ spack find -pe
==> 10 installed packages.
- -- linux-redhat6-x86_64 / gcc@4.4.7 -----------------------------
- hdf5@1.10.0-patch1 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-twppaioxqn6lti4grgopnmhwcq3h2rpw
- hdf5@1.10.0-patch1 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-j36yfw25i6gdd3q4vwlupgkpwic4ua6m
- hdf5@1.10.0-patch1 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/hdf5-1.10.0-patch1-ezvtnox35albuaxqryuondweyjgeo6es
- libdwarf@20160507 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libdwarf-20160507-dtg3tgnp7htccoly26gduqlrgvnwcp5t
- libdwarf@20160507 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libdwarf-20160507-yfx6p3g3rkmqvcqbmtb34o6pln7pqvcz
- libelf@0.8.12 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.12-ipggckv6i7h44iryzfa4dwdela32a7fy
- libelf@0.8.12 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.12-vrv2ttbd34xlfoxy4jwt6qsjrcbalmmw
- libelf@0.8.13 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/libelf-0.8.13-csrt4qxfkhjgn5xg3zjpkir7xdnszl2a
- trilinos@12.8.1 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/trilinos-12.8.1-uvd6dfd7x4uyvck4awo3r3frudihn4ar
-
- -- linux-redhat6-x86_64 / intel@16.0.3 --------------------------
- libelf@0.8.13 ~/spack/opt/spack/linux-redhat6-x86_64/intel-16.0.3/libelf-0.8.13-7wgp32xksatkvw2tbssmehw2t5tnxndj
-
+ -- linux-ubuntu16.04-x86_64 / clang@3.8.0-2ubuntu4 --------------
+ zlib@1.2.11 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/clang-3.8.0-2ubuntu4/zlib-1.2.11-4pt75q7qq6lygf3hgnona4lyc2uwedul
+
+ -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
+ hdf5@1.10.1 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-pa6oqzfeqzkqkzqr2375fqyt3qggx3tr
+ hdf5@1.10.1 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-bovz45ms24pmfr7hlckf56bxegfc4rea
+ hdf5@1.10.1 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/hdf5-1.10.1-e4gz6f2l5ik3ijuk3alwsqplex4tbvin
+ openssl@1.0.2k /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-gyxmhgbam26d7y42omb7xrvkjjgmzwio
+ openssl@1.0.2k /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/openssl-1.0.2k-2woov64m3n4gjtnfp722qcyemzf2qtom
+ trilinos@12.12.1 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/trilinos-12.12.1-xupifcp5d4f53cobm6g3xzao577uzezs
+ zlib@1.2.8 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-bkyl5bhuep6fmhuxzkmhqy25qefjcvzc
+ zlib@1.2.8 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.8-64mns5mvdacqvlashkf7v6lqrxixhmxu
+ zlib@1.2.11 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb
---------------------
Customizing Compilers
@@ -1156,97 +1544,204 @@ compilers`` command is an alias for the command ``spack compiler list``.
$ spack compilers
==> Available compilers
- -- gcc ----------------------------------------------------------
- gcc@4.4.7
-
- -- intel --------------------------------------------------------
- intel@16.0.3 intel@15.0.1 intel@14.0.0 intel@12.1.3 intel@10.0
- intel@16.0.2 intel@15.0.0 intel@13.1.1 intel@12.1.2 intel@9.1
- intel@16.0.1 intel@14.0.4 intel@13.1.0 intel@12.1.0
- intel@16.0.0 intel@14.0.3 intel@13.0.1 intel@12.0.4
- intel@15.0.4 intel@14.0.2 intel@13.0.0 intel@11.1
- intel@15.0.3 intel@14.0.1 intel@12.1.5 intel@10.1
-
- -- pgi ----------------------------------------------------------
- pgi@16.5-0 pgi@15.7-0 pgi@14.7-0 pgi@13.2-0 pgi@11.10-0 pgi@9.0-4
- pgi@16.3-0 pgi@15.5-0 pgi@14.3-0 pgi@13.1-1 pgi@11.1-0 pgi@8.0-1
- pgi@16.1-0 pgi@15.1-0 pgi@13.10-0 pgi@12.8-0 pgi@10.9-0 pgi@7.1-3
- pgi@15.10-0 pgi@14.10-0 pgi@13.6-0 pgi@12.1-0 pgi@10.2-0 pgi@7.0-6
-
-The compilers are maintained in a YAML file that can be hand-edited
-for special cases. Spack also has tools to add compilers, and
-compilers built with Spack can be added to the configuration.
+ -- clang ubuntu16.04-x86_64 -------------------------------------
+ clang@3.8.0-2ubuntu4 clang@3.7.1-2ubuntu2
+
+ -- gcc ubuntu16.04-x86_64 ---------------------------------------
+ gcc@5.4.0 gcc@4.7
+
+The compilers are maintained in a YAML file. Later in the tutorial you
+will learn how to configure compilers by hand for special cases. Spack
+also has tools to add compilers, and compilers built with Spack can be
+added to the configuration.
.. code-block:: console
- $ spack install --fake gcc@6.1.0
- ==> Installing gcc
- ==> gmp is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gmp-6.1.1-uwn4gfdtq3sywy5uf4f7znrh66oybikf
+ $ spack install --use-cache gcc
+ ==> libsigsegv is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libsigsegv-2.11-fypapcprssrj3nstp6njprskeyynsgaz
+ ==> m4 is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/m4-1.4.18-r5envx3kqctwwflhd4qax4ahqtt6x43a
+ ==> pkg-config is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/pkg-config-0.29.2-ae2hwm7q57byfbxtymts55xppqwk7ecj
+ ==> ncurses is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/ncurses-6.0-ukq4tccptm2rxd56d2bumqthnpcjzlez
+ ==> Installing readline
+ ==> Searching for binary cache of readline
+ ==> Finding buildcaches in /home/ubuntu/becker/buildcache/build_cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-matio-1.5.9-3ibrutc6cs7x6ybyt5ni5n6djtq5okm2.spec.yaml
+ ######################################################################## 100.0%
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-trilinos-12.12.1-xupifcp5d4f53cobm6g3xzao577uzezs.spec.yaml
+ ######################################################################## 100.0%
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-parmetis-4.0.3-qk77g6aiqr3f2hsykg54zzuhlxcpdcmv.spec.yaml
+ ######################################################################## 100.0%
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-superlu-dist-5.2.2-65vot2le3ezooz7tj6eveovly725o44x.spec.yaml
+ ######################################################################## 100.0%
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-hypre-2.12.1-3psjg2ka2qa26jtgitlil4vglqr67anj.spec.yaml
+ ######################################################################## 100.0%
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-mumps-5.1.1-phvk6yhkzqed6gjsbah6dnhlesdclild.spec.yaml
+ ######################################################################## 100.0%
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-netcdf-4.4.1.1-rmx4uppnhpv6kq7bh7r46zfqevgdkkgw.spec.yaml
+ ######################################################################## 100.0%
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64-gcc-5.4.0-netlib-scalapack-2.0.2-km7tsbgoyyywonyejkjoojskhc5knz3z.spec.yaml
+ ######################################################################## 100.0%
+ ==> Installing readline from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/readline-7.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-readline-7.0-gizxpch53zv5ufa62a2tb5lalcqgxbuc.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sun 12 Nov 2017 10:26:53 PM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed readline from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/readline-7.0-gizxpch53zv5ufa62a2tb5lalcqgxbuc
+ ==> Installing gdbm
+ ==> Searching for binary cache of gdbm
+ ==> Installing gdbm from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/gdbm-1.13/linux-ubuntu16.04-x86_64-gcc-5.4.0-gdbm-1.13-vdhoris6wdzzb2ykax2hz7qzgizk5h3t.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sun 12 Nov 2017 10:26:51 PM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed gdbm from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gdbm-1.13-vdhoris6wdzzb2ykax2hz7qzgizk5h3t
+ ==> Installing perl
+ ==> Searching for binary cache of perl
+ ==> Installing perl from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/perl-5.24.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-perl-5.24.1-mfzwy6y5mlbqpqvti4etpe3cgkmxkpi2.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sun 12 Nov 2017 10:27:19 PM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed perl from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/perl-5.24.1-mfzwy6y5mlbqpqvti4etpe3cgkmxkpi2
+ ==> Installing autoconf
+ ==> Searching for binary cache of autoconf
+ ==> Installing autoconf from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/autoconf-2.69/linux-ubuntu16.04-x86_64-gcc-5.4.0-autoconf-2.69-bvabhjiklhi7c5742ixzs7hubhid3ax2.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sun 12 Nov 2017 10:27:22 PM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed autoconf from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/autoconf-2.69-bvabhjiklhi7c5742ixzs7hubhid3ax2
+ ==> Installing automake
+ ==> Searching for binary cache of automake
+ ==> Installing automake from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/automake-1.15.1/linux-ubuntu16.04-x86_64-gcc-5.4.0-automake-1.15.1-kaiefe4j2lsq6b32ncrclmbeoa5z25a5.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sun 12 Nov 2017 10:27:21 PM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed automake from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/automake-1.15.1-kaiefe4j2lsq6b32ncrclmbeoa5z25a5
+ ==> libtool is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/libtool-2.4.6-o2pfwjf44353ajgr42xqtvzyvqsazkgu
+ ==> Installing gmp
+ ==> Searching for binary cache of gmp
+ ==> Installing gmp from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/gmp-6.1.2/linux-ubuntu16.04-x86_64-gcc-5.4.0-gmp-6.1.2-qc4qcfz4monpllc3nqupdo7vwinf73sw.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sun 12 Nov 2017 10:12:29 PM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed gmp from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gmp-6.1.2-qc4qcfz4monpllc3nqupdo7vwinf73sw
==> Installing isl
- ==> gmp is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gmp-6.1.1-uwn4gfdtq3sywy5uf4f7znrh66oybikf
- ==> Building isl [Package]
- ==> Successfully installed isl
- Fetch: . Build: 0.19s. Total: 0.19s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/isl-0.14-hs2w7mjjjaakkmbbv5yvfqf7yyzhorl6
- ==> Installing mpc
- ==> gmp is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gmp-6.1.1-uwn4gfdtq3sywy5uf4f7znrh66oybikf
+ ==> Searching for binary cache of isl
+ ==> Installing isl from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/isl-0.18/linux-ubuntu16.04-x86_64-gcc-5.4.0-isl-0.18-vttqoutnsmjpm3ogb52rninksc7hq5ax.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sun 12 Nov 2017 10:12:28 PM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed isl from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/isl-0.18-vttqoutnsmjpm3ogb52rninksc7hq5ax
==> Installing mpfr
- ==> gmp is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gmp-6.1.1-uwn4gfdtq3sywy5uf4f7znrh66oybikf
- ==> Building mpfr [Package]
- ==> Successfully installed mpfr
- Fetch: . Build: 0.17s. Total: 0.17s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpfr-3.1.4-7kt5ij437khredfq4bvnyu22t3fmtfvt
- ==> Building mpc [Package]
- ==> Successfully installed mpc
- Fetch: . Build: 0.28s. Total: 0.28s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpc-1.0.3-g5taq6lt3zuy5l2jtggi5lctxnl4la5u
- ==> Installing binutils
- ==> m4 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je
- ==> Installing bison
- ==> m4 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je
- ==> Building bison [Package]
- ==> Successfully installed bison
- Fetch: . Build: 0.12s. Total: 0.12s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/bison-3.0.4-hkhfysfvq5l6rsns67g2htmkpxauvnwa
- ==> Installing flex
- ==> m4 is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/m4-1.4.17-qijdzvhjyybrtwbqm73vykhmkaqro3je
- ==> bison is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/bison-3.0.4-hkhfysfvq5l6rsns67g2htmkpxauvnwa
- ==> Building flex [Package]
- ==> Successfully installed flex
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/flex-2.6.0-qd6d73rdfrozdrsdpimvl4tj7d5ps7qg
- ==> Building binutils [Package]
- ==> Successfully installed binutils
- Fetch: . Build: 0.11s. Total: 0.11s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/binutils-2.27-iq2hry3gvaxszmwwbnll7njgdgaek56o
- ==> mpfr is already installed in ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/mpfr-3.1.4-7kt5ij437khredfq4bvnyu22t3fmtfvt
- ==> Building gcc [Package]
- ==> Successfully installed gcc
- Fetch: . Build: 0.66s. Total: 0.66s.
- [+] ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gcc-6.1.0-j5576zbsot2ydljlthjzhsirsesnogvh
-
-
+ ==> Searching for binary cache of mpfr
+ ==> Installing mpfr from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpfr-3.1.5/linux-ubuntu16.04-x86_64-gcc-5.4.0-mpfr-3.1.5-mdi6irzvxcbemt7yredzr36dvo6ty4sl.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sun 12 Nov 2017 10:12:30 PM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed mpfr from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpfr-3.1.5-mdi6irzvxcbemt7yredzr36dvo6ty4sl
+ ==> Installing mpc
+ ==> Searching for binary cache of mpc
+ ==> Installing mpc from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpc-1.0.3/linux-ubuntu16.04-x86_64-gcc-5.4.0-mpc-1.0.3-tumbpshu5hjxwextoudk5hmic6nspb3z.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sun 12 Nov 2017 10:12:29 PM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed mpc from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/mpc-1.0.3-tumbpshu5hjxwextoudk5hmic6nspb3z
+ ==> zlib is already installed in /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/zlib-1.2.11-5nus6knzumx4ik2yl44jxtgtsl7d54xb
+ ==> Installing gcc
+ ==> Searching for binary cache of gcc
+ ==> Installing gcc from binary cache
+ ==> Fetching file:///home/ubuntu/becker/buildcache/build_cache/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0/linux-ubuntu16.04-x86_64-gcc-5.4.0-gcc-7.2.0-k3vy57euyeuyvpotwf4wezfmpo3mrtrj.spack
+ ######################################################################## 100.0%
+ gpg: Signature made Sun 12 Nov 2017 10:16:31 PM UTC using RSA key ID 3B7C69B2
+ gpg: Good signature from "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" [unknown]
+ gpg: WARNING: This key is not certified with a trusted signature!
+ gpg: There is no indication that the signature belongs to the owner.
+ Primary key fingerprint: 95C7 1787 7AC0 0FFD AA8F D6E9 9CFA 4A45 3B7C 69B2
+ ==> Relocating package from
+ /home/ubuntu/becker/spack/opt/spack to /home/ubuntu/test/spack/opt/spack.
+ ==> Successfully installed gcc from binary cache
+ [+] /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-k3vy57euyeuyvpotwf4wezfmpo3mrtrj
$ spack find -p gcc
==> 1 installed packages.
- -- linux-redhat6-x86_64 / gcc@4.4.7 -----------------------------
- gcc@6.1.0 ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gcc-6.1.0-j5576zbsot2ydljlthjzhsirsesnogvh
-
+ -- linux-ubuntu16.04-x86_64 / gcc@5.4.0 -------------------------
+ gcc@7.2.0 /home/ubuntu/test/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-k3vy57euyeuyvpotwf4wezfmpo3mrtrj
-If we had done a "real" install of gcc, we could add it to our
-configuration now using the `spack compiler add` command, but we would
-also be waiting for it to install. If we run the command now, it will
-return no new compilers.
+We can add gcc to Spack as an available compiler using the ``spack
+compiler add`` command. This will allow future packages to build with
+gcc@7.2.0.
.. code-block:: console
- $ spack compiler add ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gcc-6.1.0-j5576zbsot2ydljlthjzhsirsesnogvh/bin
- ==> Found no new compilers
+ $ spack compiler add /home/ubuntu/becker/spack/opt/spack/linux-ubuntu16.04-x86_64/gcc-5.4.0/gcc-7.2.0-k3vy57euyeuyvpotwf4wezfmpo3mrtrj
+ ==> Added 1 new compiler to /home/ubuntu/.spack/linux/compilers.yaml
+ gcc@7.2.0
+ ==> Compilers are defined in the following files:
+ /home/ubuntu/.spack/linux/compilers.yaml
-If we had done a real install, the output would have been as follows:
+We can also remove compilers from our configuration using ``spack compiler remove <compiler_spec>``
.. code-block:: console
- $ spack compiler add ~/spack/opt/spack/linux-redhat6-x86_64/gcc-4.4.7/gcc-6.1.0-j5576zbsot2ydljlthjzhsirsesnogvh/bin
- ==> Added 1 new compiler to ~/.spack/linux/compilers.yaml
- gcc@6.1.0
+ $ spack compiler remove gcc@7.2.0
+ ==> Removed compiler gcc@7.2.0