diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/ampliconnoise/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/ampliconnoise/package.py | 60 |
1 files changed, 29 insertions, 31 deletions
diff --git a/var/spack/repos/builtin/packages/ampliconnoise/package.py b/var/spack/repos/builtin/packages/ampliconnoise/package.py index d176c3c56c..ba9c8fed63 100644 --- a/var/spack/repos/builtin/packages/ampliconnoise/package.py +++ b/var/spack/repos/builtin/packages/ampliconnoise/package.py @@ -10,43 +10,41 @@ from spack.package import * class Ampliconnoise(MakefilePackage): """AmpliconNoise is a collection of programs for the removal of noise - from 454 sequenced PCR amplicons.""" + from 454 sequenced PCR amplicons.""" homepage = "https://directory.fsf.org/wiki/AmpliconNoise" - url = "https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/ampliconnoise/AmpliconNoiseV1.29.tar.gz" + url = "https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/ampliconnoise/AmpliconNoiseV1.29.tar.gz" - version('1.29', sha256='0bf946806d77ecaf0994ad8ebf9a5e98ad33c809f6def5c9340a16c367918167') + version("1.29", sha256="0bf946806d77ecaf0994ad8ebf9a5e98ad33c809f6def5c9340a16c367918167") - depends_on('mpi@2:') - depends_on('gsl') + depends_on("mpi@2:") + depends_on("gsl") - patch('Fix-return-type.patch') + patch("Fix-return-type.patch") def setup_run_environment(self, env): - env.prepend_path('PATH', self.prefix.Scripts) - env.set('PYRO_LOOKUP_FILE', os.path.join(self.prefix, 'Data', - 'LookUp_E123.dat')) - env.set('SEQ_LOOKUP_FILE', os.path.join(self.prefix, 'Data', - 'Tran.dat')) + env.prepend_path("PATH", self.prefix.Scripts) + env.set("PYRO_LOOKUP_FILE", os.path.join(self.prefix, "Data", "LookUp_E123.dat")) + env.set("SEQ_LOOKUP_FILE", os.path.join(self.prefix, "Data", "Tran.dat")) def install(self, spec, prefix): - make('install') - install_tree('bin', prefix.bin) - install_tree('Data', prefix.Data) - install_tree('FastaUnique', prefix.FastaUnique) - install_tree('FCluster', prefix.FCluster) - install_tree('NDist', prefix.NDist) - install_tree('Perseus', prefix.Perseus) - install_tree('PerseusD', prefix.PerseusD) - install_tree('PyroDist', prefix.PyroDist) - install_tree('PyroNoise', prefix.PyroNoise) - install_tree('PyroNoiseM', prefix.PyroNoiseM) - install_tree('Scripts', prefix.Scripts) - install_tree('SeqDist', prefix.SeqDist) - install_tree('SeqNoise', prefix.SeqNoise) - install_tree('SplitClusterClust', prefix.SplitClusterClust) - install_tree('SplitClusterEven', prefix.SplitClusterEven) - install_tree('Test', prefix.Test) - install_tree('TestFLX', prefix.TestFLX) - install_tree('TestTitanium', prefix.TestTitanium) - install_tree('TestTitaniumFast', prefix.TestTitaniumFast) + make("install") + install_tree("bin", prefix.bin) + install_tree("Data", prefix.Data) + install_tree("FastaUnique", prefix.FastaUnique) + install_tree("FCluster", prefix.FCluster) + install_tree("NDist", prefix.NDist) + install_tree("Perseus", prefix.Perseus) + install_tree("PerseusD", prefix.PerseusD) + install_tree("PyroDist", prefix.PyroDist) + install_tree("PyroNoise", prefix.PyroNoise) + install_tree("PyroNoiseM", prefix.PyroNoiseM) + install_tree("Scripts", prefix.Scripts) + install_tree("SeqDist", prefix.SeqDist) + install_tree("SeqNoise", prefix.SeqNoise) + install_tree("SplitClusterClust", prefix.SplitClusterClust) + install_tree("SplitClusterEven", prefix.SplitClusterEven) + install_tree("Test", prefix.Test) + install_tree("TestFLX", prefix.TestFLX) + install_tree("TestTitanium", prefix.TestTitanium) + install_tree("TestTitaniumFast", prefix.TestTitaniumFast) |