diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/augustus/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/augustus/package.py | 58 |
1 files changed, 25 insertions, 33 deletions
diff --git a/var/spack/repos/builtin/packages/augustus/package.py b/var/spack/repos/builtin/packages/augustus/package.py index d79cde02c5..86cffa20f7 100644 --- a/var/spack/repos/builtin/packages/augustus/package.py +++ b/var/spack/repos/builtin/packages/augustus/package.py @@ -1,27 +1,8 @@ -############################################################################## -# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. # -# This file is part of Spack. -# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/spack/spack -# Please also see the LICENSE file for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU Lesser General Public License (as -# published by the Free Software Foundation) version 2.1, February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU Lesser General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public -# License along with this program; if not, write to the Free Software -# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + from spack import * @@ -30,11 +11,12 @@ class Augustus(MakefilePackage): genomic sequences""" homepage = "http://bioinf.uni-greifswald.de/augustus/" - url = "http://bioinf.uni-greifswald.de/augustus/binaries/augustus-3.3.tar.gz" + url = "http://bioinf.uni-greifswald.de/augustus/binaries/augustus-3.3.1.tar.gz" + list_url = "http://bioinf.uni-greifswald.de/augustus/binaries/old" - version('3.3', '9ebe494df78ebf6a43091cfc8551050c') - version('3.2.3', 'b8c47ea8d0c45aa7bb9a82626c8ff830', - url='http://bioinf.uni-greifswald.de/augustus/binaries/old/augustus-3.2.3.tar.gz') + version('3.3.1', '8363ece221c799eb169f47e545efb951') + version('3.3', '93691d9aafc7d3d0e1adf31ec308507f') + version('3.2.3', 'b8c47ea8d0c45aa7bb9a82626c8ff830') depends_on('bamtools') depends_on('gsl') @@ -48,18 +30,28 @@ class Augustus(MakefilePackage): 'bamtools'].prefix) makefile.filter('INCLUDES = *', 'INCLUDES = -I$(BAMTOOLS)/include/bamtools ') - makefile.filter('LIBS = -lbamtools -lz', - 'LIBS = $(BAMTOOLS)/lib/bamtools' - '/libbamtools.a -lz') + if 'bamtools@2.5:' in spec: + makefile.filter('LIBS = -lbamtools -lz', + 'LIBS = $(BAMTOOLS)/lib64/' + '/libbamtools.a -lz') + if 'bamtools@:2.4' in spec: + makefile.filter('LIBS = -lbamtools -lz', + 'LIBS = $(BAMTOOLS)/lib/bamtools' + '/libbamtools.a -lz') with working_dir(join_path('auxprogs', 'bam2hints')): makefile = FileFilter('Makefile') makefile.filter('# Variable definition', 'BAMTOOLS = %s' % self.spec['bamtools'].prefix) makefile.filter('INCLUDES = /usr/include/bamtools', 'INCLUDES = $(BAMTOOLS)/include/bamtools') - makefile.filter('LIBS = -lbamtools -lz', - 'LIBS = $(BAMTOOLS)/lib/bamtools' - '/libbamtools.a -lz') + if 'bamtools@2.5:' in spec: + makefile.filter('LIBS = -lbamtools -lz', + 'LIBS = $(BAMTOOLS)/lib64/' + '/libbamtools.a -lz') + if 'bamtools@:2.4' in spec: + makefile.filter('LIBS = -lbamtools -lz', + 'LIBS = $(BAMTOOLS)/lib/bamtools' + '/libbamtools.a -lz') def install(self, spec, prefix): install_tree('bin', join_path(self.spec.prefix, 'bin')) |