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Diffstat (limited to 'var/spack/repos/builtin/packages/autofact/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/autofact/package.py | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/autofact/package.py b/var/spack/repos/builtin/packages/autofact/package.py new file mode 100644 index 0000000000..0ad36c82dd --- /dev/null +++ b/var/spack/repos/builtin/packages/autofact/package.py @@ -0,0 +1,36 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * +import glob + + +class Autofact(Package): + """An Automatic Functional Annotation and Classification Tool""" + + homepage = "http://megasun.bch.umontreal.ca/Software/AutoFACT.htm" + url = "http://megasun.bch.umontreal.ca/Software/AutoFACT_v3_4.tar" + + version('3_4', sha256='1465d263b19adb42f01f6e636ac40ef1c2e3dbd63461f977b89da9493fe9c6f4') + + depends_on('perl', type='run') + depends_on('perl-bio-perl', type='run') + depends_on('perl-io-string', type='run') + depends_on('perl-lwp', type='run') + depends_on('blast-plus', type='run') + + def patch(self): + with working_dir('scripts'): + files = glob.iglob("*.pl") + for file in files: + change = FileFilter(file) + change.filter('usr/bin/perl', 'usr/bin/env perl') + + def install(self, spec, prefix): + install_tree(self.stage.source_path, prefix) + + def setup_environment(self, spack_env, run_env): + run_env.prepend_path('PATH', self.prefix.scripts) + run_env.set('PATH2AUTOFACT', self.prefix) |