diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/bcftools/fix_mk.patch')
| -rw-r--r-- | var/spack/repos/builtin/packages/bcftools/fix_mk.patch | 16 |
1 files changed, 16 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/bcftools/fix_mk.patch b/var/spack/repos/builtin/packages/bcftools/fix_mk.patch new file mode 100644 index 0000000000..0625138ac8 --- /dev/null +++ b/var/spack/repos/builtin/packages/bcftools/fix_mk.patch @@ -0,0 +1,16 @@ +diff -ru a/plugins/fixploidy.mk b/plugins/fixploidy.mk +--- a/plugins/fixploidy.mk 2014-10-09 04:01:22.000000000 -0500 ++++ b/plugins/fixploidy.mk 2020-01-13 21:55:28.926309796 -0600 +@@ -1,2 +1,2 @@ +-plugins/fixploidy.so: plugins/fixploidy.c version.h version.c ploidy.h ploidy.c $(HTSDIR)/libhts.so +- $(CC) $(CFLAGS) $(INCLUDES) -fPIC -shared -o $@ ploidy.c version.c $< -L$(HTSDIR) -lhts ++plugins/fixploidy.so: plugins/fixploidy.c version.h version.c ploidy.h ploidy.c ++ $(CC) $(CFLAGS) $(INCLUDES) -fPIC -shared -o $@ ploidy.c version.c $< $(HTSLIB) +diff -ru a/plugins/vcf2sex.mk b/plugins/vcf2sex.mk +--- a/plugins/vcf2sex.mk 2014-10-09 04:01:22.000000000 -0500 ++++ b/plugins/vcf2sex.mk 2020-01-13 21:55:55.056277406 -0600 +@@ -1,2 +1,2 @@ +-plugins/vcf2sex.so: plugins/vcf2sex.c version.h version.c ploidy.h ploidy.c $(HTSDIR)/libhts.so +- $(CC) $(CFLAGS) $(INCLUDES) -fPIC -shared -o $@ ploidy.c version.c $< -L$(HTSDIR) -lhts ++plugins/vcf2sex.so: plugins/vcf2sex.c version.h version.c ploidy.h ploidy.c ++ $(CC) $(CFLAGS) $(INCLUDES) -fPIC -shared -o $@ ploidy.c version.c $< $(HTSLIB) |