diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/bcftools/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/bcftools/package.py | 41 |
1 files changed, 13 insertions, 28 deletions
diff --git a/var/spack/repos/builtin/packages/bcftools/package.py b/var/spack/repos/builtin/packages/bcftools/package.py index b1cccc1f21..e49c7c4bd2 100644 --- a/var/spack/repos/builtin/packages/bcftools/package.py +++ b/var/spack/repos/builtin/packages/bcftools/package.py @@ -1,31 +1,12 @@ -############################################################################## -# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. # -# This file is part of Spack. -# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/spack/spack -# Please also see the NOTICE and LICENSE files for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU Lesser General Public License (as -# published by the Free Software Foundation) version 2.1, February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU Lesser General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public -# License along with this program; if not, write to the Free Software -# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + from spack import * -class Bcftools(Package): +class Bcftools(AutotoolsPackage): """BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both @@ -34,16 +15,20 @@ class Bcftools(Package): homepage = "http://samtools.github.io/bcftools/" url = "https://github.com/samtools/bcftools/releases/download/1.3.1/bcftools-1.3.1.tar.bz2" + version('1.9', sha256='6f36d0e6f16ec4acf88649fb1565d443acf0ba40f25a9afd87f14d14d13070c8') + version('1.8', 'ba6c2fb7eb6dcb208f00ab8b22df475c') + version('1.7', 'c972db68d17af9da3a18963f4e5aeca8') version('1.6', 'c4dba1e8cb55db0f94b4c47724b4f9fa') version('1.4', '50ccf0a073bd70e99cdb3c8be830416e') version('1.3.1', '575001e9fca37cab0c7a7287ad4b1cdb') version('1.2', '8044bed8fce62f7072fc6835420f0906') + depends_on('libzip', when='@1.8:') + + depends_on('htslib@1.9', when='@1.9') + depends_on('htslib@1.8', when='@1.8') + depends_on('htslib@1.7', when='@1.7') depends_on('htslib@1.6', when='@1.6') depends_on('htslib@1.4', when='@1.4') depends_on('htslib@1.3.1', when='@1.3.1') depends_on('htslib@1.2', when='@1.2') - - def install(self, spec, prefix): - make("prefix=%s" % prefix, "all") - make("prefix=%s" % prefix, "install") |