diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/biopieces/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/biopieces/package.py | 89 |
1 files changed, 44 insertions, 45 deletions
diff --git a/var/spack/repos/builtin/packages/biopieces/package.py b/var/spack/repos/builtin/packages/biopieces/package.py index a28e58c5cf..3a3eadd65e 100644 --- a/var/spack/repos/builtin/packages/biopieces/package.py +++ b/var/spack/repos/builtin/packages/biopieces/package.py @@ -8,58 +8,57 @@ from spack.package import * class Biopieces(Package): """The Biopieces are a collection of bioinformatics tools that can be - pieced together in a very easy and flexible manner to perform both - simple and complex tasks.""" + pieced together in a very easy and flexible manner to perform both + simple and complex tasks.""" homepage = "https://maasha.github.io/biopieces/" - git = "https://github.com/maasha/biopieces.git" + git = "https://github.com/maasha/biopieces.git" - version('2016-04-12', commit='982f80f7c55e2cae67737d80fe35a4e784762856', - submodules=True) + version("2016-04-12", commit="982f80f7c55e2cae67737d80fe35a4e784762856", submodules=True) - depends_on('perl', type=('build', 'run')) - depends_on('perl-module-build', type=('build', 'run')) - depends_on('perl-bit-vector', type=('build', 'run')) - depends_on('perl-svg', type=('build', 'run')) - depends_on('perl-termreadkey', type=('build', 'run')) - depends_on('perl-time-hires', type=('build', 'run')) - depends_on('perl-dbi', type=('build', 'run')) - depends_on('perl-xml-parser', type=('build', 'run')) - depends_on('perl-carp-clan', type=('build', 'run')) - depends_on('perl-class-inspector', type=('build', 'run')) - depends_on('perl-html-parser', type=('build', 'run')) - depends_on('perl-libwww-perl', type=('build', 'run')) - depends_on('perl-soap-lite', type=('build', 'run')) - depends_on('perl-uri', type=('build', 'run')) - depends_on('perl-inline', type=('build', 'run')) - depends_on('perl-inline-c', type=('build', 'run')) - depends_on('perl-parse-recdescent', type=('build', 'run')) - depends_on('perl-perl-version', type=('build', 'run')) - depends_on('perl-db-file', type=('build', 'run')) - depends_on('perl-dbd-mysql', type=('build', 'run')) + depends_on("perl", type=("build", "run")) + depends_on("perl-module-build", type=("build", "run")) + depends_on("perl-bit-vector", type=("build", "run")) + depends_on("perl-svg", type=("build", "run")) + depends_on("perl-termreadkey", type=("build", "run")) + depends_on("perl-time-hires", type=("build", "run")) + depends_on("perl-dbi", type=("build", "run")) + depends_on("perl-xml-parser", type=("build", "run")) + depends_on("perl-carp-clan", type=("build", "run")) + depends_on("perl-class-inspector", type=("build", "run")) + depends_on("perl-html-parser", type=("build", "run")) + depends_on("perl-libwww-perl", type=("build", "run")) + depends_on("perl-soap-lite", type=("build", "run")) + depends_on("perl-uri", type=("build", "run")) + depends_on("perl-inline", type=("build", "run")) + depends_on("perl-inline-c", type=("build", "run")) + depends_on("perl-parse-recdescent", type=("build", "run")) + depends_on("perl-perl-version", type=("build", "run")) + depends_on("perl-db-file", type=("build", "run")) + depends_on("perl-dbd-mysql", type=("build", "run")) - depends_on('ruby@1.9:') - depends_on('ruby-gnuplot') - depends_on('ruby-narray') - depends_on('ruby-rubyinline') - depends_on('ruby-terminal-table') + depends_on("ruby@1.9:") + depends_on("ruby-gnuplot") + depends_on("ruby-narray") + depends_on("ruby-rubyinline") + depends_on("ruby-terminal-table") - depends_on('python@2.6:', type=('build', 'run')) - depends_on('blast-plus') - depends_on('muscle') - depends_on('mummer') - depends_on('blat') - depends_on('vmatch') - depends_on('bowtie') - depends_on('bwa') - depends_on('usearch') - depends_on('velvet') - depends_on('idba') - depends_on('ray') - depends_on('scan-for-matches') + depends_on("python@2.6:", type=("build", "run")) + depends_on("blast-plus") + depends_on("muscle") + depends_on("mummer") + depends_on("blat") + depends_on("vmatch") + depends_on("bowtie") + depends_on("bwa") + depends_on("usearch") + depends_on("velvet") + depends_on("idba") + depends_on("ray") + depends_on("scan-for-matches") def install(self, spec, prefix): - install_tree('.', prefix) + install_tree(".", prefix) def setup_run_environment(self, env): # Note: user will need to set environment variables on their own, @@ -67,4 +66,4 @@ class Biopieces(Package): # BP_DATA - Contains genomic data etc. # BP_TMP - Required temporary directory # BP_LOG - Required log directory - env.prepend_path('BP_DIR', self.prefix) + env.prepend_path("BP_DIR", self.prefix) |